View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21124_low_9 (Length: 322)
Name: NF21124_low_9
Description: NF21124
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21124_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 94 - 316
Target Start/End: Complemental strand, 13136106 - 13135890
Alignment:
| Q |
94 |
caagaaacatgcttccc-agcgacaatctacttcccaaaactttcaaaagtgatgtggataacagattgaccaattaaaatactcgattttgcacaatgc |
192 |
Q |
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| T |
13136106 |
caagaaatatgcttccccagcgacaatctacttcccaaaactttcaaaagtgatgcggataatagattgaccaattaaaatactcgattttgcacaatgc |
13136007 |
T |
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| Q |
193 |
atagaggacagataaatgtcaacacaagagagaaagtgtaaatacactgaacactctcggataaagcttgtcgtgatatatactcactccgtcccaaatt |
292 |
Q |
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| T |
13136006 |
atagaggacaaataaatgtcaacacaagagagaaagtgtaaata-------cactctcggataaagcttgtcgtgatatatactcactccgtcccaaatt |
13135914 |
T |
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| Q |
293 |
aacagagtcatttgttcatctcac |
316 |
Q |
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||||||||||||||||||| |||| |
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| T |
13135913 |
aacagagtcatttgttcatttcac |
13135890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 17776618 - 17776688
Alignment:
| Q |
157 |
gattgaccaattaaaatactcgattttgcacaatgcatagaggacagataaatgtcaacacaagagagaaa |
227 |
Q |
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| T |
17776618 |
gattgaccaattaaaatgcttgcttttgcacaatacatggaggagagagaaatgttaacatgagagagaaa |
17776688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 109 - 238
Target Start/End: Complemental strand, 29108489 - 29108360
Alignment:
| Q |
109 |
ccagcgacaatctacttcccaaaactttcaaaagtgatgtggataacagattgaccaattaaaatactcgattttgcacaatgcatagaggacagataaa |
208 |
Q |
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| T |
29108489 |
ccagcgacaatttccttcccgaaactttcaagagtgacgtggataacagattgaccaatcaaaatatttggttttgcacaatgcatggaggagagataaa |
29108390 |
T |
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| Q |
209 |
tgtcaacacaagagagaaagtgtaaataca |
238 |
Q |
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| T |
29108389 |
catcaacaagagagagaaagtggaaataca |
29108360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 115 - 240
Target Start/End: Complemental strand, 9156044 - 9155919
Alignment:
| Q |
115 |
acaatctacttcccaaaactttcaaaagtgatgtggataacagattgaccaattaaaatactcgattttgcacaatgcatagaggacagataaatgtcaa |
214 |
Q |
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||||| |||||| | |||||||||| ||||| |||||||||| || |||||||||||||| | | ||||||||||| ||||||||| ||||||||||||| |
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| T |
9156044 |
acaatttacttcacgaaactttcaagagtgacgtggataacatatcgaccaattaaaatatttggttttgcacaatacatagaggagagataaatgtcaa |
9155945 |
T |
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| Q |
215 |
cacaagagagaaagtgtaaatacact |
240 |
Q |
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| T |
9155944 |
cgggagagagaaagtgtaaatacact |
9155919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 112 - 238
Target Start/End: Complemental strand, 26274867 - 26274741
Alignment:
| Q |
112 |
gcgacaatctacttcccaaaactttcaaaagtgatgtggataacagattgaccaattaaaatactcgattttgcacaatgcatagaggacagataaatgt |
211 |
Q |
| |
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|||||||| |||||||||||| ||| || |||| |||||| ||||||||||||||||||||||| | ||||||| ||| ||| || || |||||||||| |
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| T |
26274867 |
gcgacaatttacttcccaaaatttttaagagtggcgtggatcacagattgaccaattaaaatacttggttttgcataatacatggaagagagataaatgt |
26274768 |
T |
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| Q |
212 |
caacacaagagagaaagtgtaaataca |
238 |
Q |
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||||| ||||||||| |||||||||| |
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| T |
26274767 |
caacaggagagagaaaatgtaaataca |
26274741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 144 - 227
Target Start/End: Original strand, 7813816 - 7813899
Alignment:
| Q |
144 |
gatgtggataacagattgaccaattaaaatactcgattttgcacaatgcatagaggacagataaatgtcaacacaagagagaaa |
227 |
Q |
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||||||||| ||||||||||||||||||||||| ||||||||||||| |||||| || ||||||||||||||| || ||||||| |
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| T |
7813816 |
gatgtggatgacagattgaccaattaaaatacttgattttgcacaatacatagaagagagataaatgtcaacagaaaagagaaa |
7813899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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