View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21125_high_12 (Length: 250)

Name: NF21125_high_12
Description: NF21125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21125_high_12
NF21125_high_12
[»] chr8 (2 HSPs)
chr8 (13-250)||(13024062-13024299)
chr8 (13-171)||(13068599-13068757)


Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 13024299 - 13024062
Alignment:
Q  13 aatatgaagagttatcattgtcttataagtcacatttttcttctcatcattcaatttgaaacgaaaacaacctaataaaactgctgagaatatcttcatc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13024299 aatatgaagagttatcattgtcttataagtcacatttttcttctcatcattcaatttgaaacgaaaacaacctaataaaactgctgagaatatcttcatc 13024200  T
Q  113 tgtctataagcaaactcctttcctaggcatatccgaggacctgcctgcatttcaatcaatattcaatttaagcacgctcttacaaaggaaactgcataca 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  13024199 tgtctataagcaaactcctttcctaggcatatccgaggacctgcctgcatttcaatcaatattcaatttaagcacgctcttacaaaagaaactgcataca 13024100  T
Q  213 aagtcttggagtatttaacatgtttgaataacatggta 250  Q
    |||||||||| |||||||||||||||||||||||||||    
T  13024099 aagtcttggaatatttaacatgtttgaataacatggta 13024062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 13 - 171
Target Start/End: Original strand, 13068599 - 13068757
Alignment:
Q  13 aatatgaagagttatcattgtcttataagtcacatttttcttctcatcattcaatttgaaacgaaaacaacctaataaaactgctgagaatatcttcatc 112  Q
    |||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13068599 aatatgaagatttatcattgtcttataagtcacattcctcttctcatcattcaatttgaaacgaaaacaacctaataaaactgctgagaatatcttcatc 13068698  T
Q  113 tgtctataagcaaactcctttcctaggcatatccgaggacctgcctgcatttcaatcaa 171  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13068699 tgtctataagcaaactcttttcctaggcatatccgaggacctgcctgcatttcaatcaa 13068757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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