View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21125_high_7 (Length: 342)
Name: NF21125_high_7
Description: NF21125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21125_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 118; Significance: 4e-60; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 202 - 327
Target Start/End: Complemental strand, 32535319 - 32535194
Alignment:
| Q |
202 |
caaattaagaggcgtgttaataagaaccatttcctcggtattgactctattcaaaagtgccacgccaataatgtgttgaaatgttaagaagattagttag |
301 |
Q |
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| T |
32535319 |
caaattaagaggcgtgttaataagaaccctttcctcggtattgactctattcaaaagtgccacgccaataatgtgttgaaatgttaagaagattagttag |
32535220 |
T |
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| Q |
302 |
gaaatagaaaatgacctaacttccct |
327 |
Q |
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| T |
32535219 |
gaaatagaaaatgatctaacttccct |
32535194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 32535471 - 32535402
Alignment:
| Q |
13 |
aatattgttaaagcatatttaaagagtcaagtagcgaagtttctaggtacaaaaaacatcatgctaaggg |
82 |
Q |
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| T |
32535471 |
aatattgttaaagcatatttaaagagtcaagtagcgaagtttctaggtacaaaaaacatcatgctaaggg |
32535402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 322
Target Start/End: Complemental strand, 32537868 - 32537826
Alignment:
| Q |
280 |
aaatgttaagaagattagttaggaaatagaaaatgacctaact |
322 |
Q |
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| T |
32537868 |
aaatgttcagaagattagttaggaaatagaaaatgacctaact |
32537826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 31448191 - 31448229
Alignment:
| Q |
18 |
tgttaaagcatatttaaagagtcaagtagcgaagtttct |
56 |
Q |
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| T |
31448191 |
tgttaaagcatatttaaagagtcaaatagcgaagtttct |
31448229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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