View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21125_high_9 (Length: 314)
Name: NF21125_high_9
Description: NF21125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21125_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 15 - 255
Target Start/End: Original strand, 29606641 - 29606881
Alignment:
| Q |
15 |
caaaggttacaccggcattaagcccaaaaaccccatcccctaaaattcaaccaccaccacatccacccaaaaaagcacctgtttctctaccaccattatc |
114 |
Q |
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| T |
29606641 |
caaaggttacaccggcattaagcccaaaaaccccatcccctaaaattcaaccaccaccacatccacccaaaaaagcacctgtttctctaccaccattatc |
29606740 |
T |
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| Q |
115 |
tataccacctgtttcacttccaccattaccattaccaccagcttctaaaccaccaaaggtatccccagcacctgcaaaggttccaaaagcaccagcaccg |
214 |
Q |
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| T |
29606741 |
tataccacctgtttcacttccaccattaccattaccaccagcttctaaaccaccaaaggtatccccagcacctgcaaaggttccaaaagcaccagcaccg |
29606840 |
T |
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| Q |
215 |
gccaaagaagcaccagcaccagcacctacacacaaaaagaa |
255 |
Q |
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| T |
29606841 |
gccaaagaagcaccagcaccagcacctacacacaaaaagaa |
29606881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 202 - 295
Target Start/End: Original strand, 29606888 - 29606981
Alignment:
| Q |
202 |
agcaccagcaccggccaaagaagcaccagcaccagcacctacacacaaaaagaagaaagcaccaaaatcatcacctgttccttccccagcaatt |
295 |
Q |
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| T |
29606888 |
agcacccgcaccagacaaagaaacaccggcaccagcacctacacacaaaaagaagaaagcaccaaaatcatcacctgttccttccccagcaatt |
29606981 |
T |
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