View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21125_low_10 (Length: 307)
Name: NF21125_low_10
Description: NF21125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21125_low_10 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 307
Target Start/End: Complemental strand, 50179670 - 50179379
Alignment:
| Q |
16 |
tgatcctcaaatgtgtcttctattagttagtaagatcttcaaatgtgtcttatgtttgtcagtttggtccataaaattagtaacataagacacactcgag |
115 |
Q |
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| T |
50179670 |
tgatcctcaaatgtgtcttctattagttagtaagatcttcaaatgtgtcttatgtttgtcagtttggtccataaaattagtaacataagacacactcgag |
50179571 |
T |
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| Q |
116 |
gatgtttataaattttttatacattaagggattataataacacttcctcacacacatttagggacaaaaatgacagtttactttgcactatatgcatgag |
215 |
Q |
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| T |
50179570 |
gatgtttataaattttttatacattaagggattataataacacttcctcacacacatttagggacaaaaatgacagtttacttcgcactatatgcatgag |
50179471 |
T |
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| Q |
216 |
tcaatattcaccgaacataacaaagcaatgaaagttacctgtttcattgagctttacaaaaagttggtctctcgttggaagtgtatacattc |
307 |
Q |
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| T |
50179470 |
tcaatattcaccgaacataacaaagcaatgaaagttacctgtttcattgagctttacaaaaagttggtctctcgttggaagtgtatacattc |
50179379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 100
Target Start/End: Complemental strand, 16551133 - 16551071
Alignment:
| Q |
38 |
ttagttagtaagatcttcaaatgtgtcttatgtttgtcagtttggtccataaaattagtaaca |
100 |
Q |
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| T |
16551133 |
ttagttagtttgatcttcgaatgtgtcttttgtatgtcagtttggtccataaaattactaaca |
16551071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 7028573 - 7028625
Alignment:
| Q |
70 |
tttgtcagtttggtccataaaattagtaacataagacacactcgaggatgttt |
122 |
Q |
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| T |
7028573 |
tttgttagtttggtccataaaattactaacaaaagacacactcaatgatgttt |
7028625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 107549 - 107493
Alignment:
| Q |
55 |
caaatgtgtcttatgtttgtcagtttggtccataaaattagtaacataagacacact |
111 |
Q |
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| T |
107549 |
caaatgtgtcttttgttagtcattttagtccataaaattactaacaaaagacacact |
107493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 4080981 - 4080922
Alignment:
| Q |
49 |
gatcttcaaatgtgtcttatgtttgtcagtttggtccataaaattagtaacataagacac |
108 |
Q |
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| T |
4080981 |
gatcgtcaaaagtgtcttctgttagtcagtttggtccaaaaaattattaacaaaagacac |
4080922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 91
Target Start/End: Complemental strand, 37197033 - 37196980
Alignment:
| Q |
38 |
ttagttagtaagatcttcaaatgtgtcttatgtttgtcagtttggtccataaaa |
91 |
Q |
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| T |
37197033 |
ttagttagtttggtctttaaatgtgtattatgttggtcagtttggtccataaaa |
37196980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 33567370 - 33567424
Alignment:
| Q |
57 |
aatgtgtcttatgtttgtcagtttggtccataaaattagtaacataagacacact |
111 |
Q |
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| T |
33567370 |
aatgtatcttatgttagccaatttggtccattaaattagtaacaaaagacacact |
33567424 |
T |
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