View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21125_low_16 (Length: 232)
Name: NF21125_low_16
Description: NF21125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21125_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 3 - 214
Target Start/End: Original strand, 55956485 - 55956696
Alignment:
| Q |
3 |
tatgatgtggaagtgatcctcctaatgctagttgatgcaagtttcctattaaaggaagcttccatggtcctggtggaagtttatgaacctcgttcttcac |
102 |
Q |
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| T |
55956485 |
tatgatgtggaagtgatcctcctaatgctagttgatgcaagtttcctattaaaggaagcttccatggtcctggtggaagtttatgaacctcgttcttcac |
55956584 |
T |
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| Q |
103 |
tttgattttctgcttataaatctttgttaaacaaagtatcaagaagatgaatgaggaaatgatgaggaaggaaaatttgaattccatggcatacattgaa |
202 |
Q |
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| T |
55956585 |
tttgattttctgcttataaatctttgttaaacaaagtatcaagaagatgaatgaggaaatgatgaggaaggaaaatttgaattccatggcatacagtgaa |
55956684 |
T |
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| Q |
203 |
attggcacttat |
214 |
Q |
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| T |
55956685 |
attggcacttat |
55956696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 55960004 - 55960056
Alignment:
| Q |
143 |
aagaagatgaatgaggaaatgatgaggaaggaaaatttgaattccatggcata |
195 |
Q |
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| T |
55960004 |
aagaagatgaatgaggaaatgatgagtaaggaagatttcaattccatggcata |
55960056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 3 - 189
Target Start/End: Original strand, 12426815 - 12426995
Alignment:
| Q |
3 |
tatgatgtggaagtgatcctcctaatgctagttgatgcaagtttcctattaaaggaagcttccatggtcctggtggaagtttatgaacctcgttcttcac |
102 |
Q |
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| T |
12426815 |
tatggtgtggaagttttcctgctaatgctagttgatgcaagtttcctattagaggaagcttccatggtcctggtggaagtttatg------gctcctcat |
12426908 |
T |
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| Q |
103 |
tttgattttctgcttataaatctttgttaaacaaagtatcaagaagatgaatgaggaaatgatgaggaaggaaaatttgaattccat |
189 |
Q |
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| T |
12426909 |
tttgattttctgcttgtagatttttgctaggaaaagcagaaagaagatgaatgaggaaattatcaagaaggaagatttggattccat |
12426995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 34 - 189
Target Start/End: Complemental strand, 12265974 - 12265825
Alignment:
| Q |
34 |
ttgatgcaagtttcctattaaaggaagcttccatggtcctggtggaagtttatgaacctcgttcttcactttgattttctgcttataaatctttgttaaa |
133 |
Q |
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| T |
12265974 |
ttgatgcaagtttcctattagaggaagcttccatggtcctggtggaagtttatg------gctcctcactttgattttatgcttgtagatctttgctagg |
12265881 |
T |
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| Q |
134 |
caaagtatcaagaagatgaatgaggaaatgatgaggaaggaaaatttgaattccat |
189 |
Q |
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||| || |||||||||||| |||||||| | || ||||| | |||||| |||||| |
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| T |
12265880 |
aaaattagcaagaagatgaaggaggaaattaggaagaagggagatttgagttccat |
12265825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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