View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21125_low_19 (Length: 226)

Name: NF21125_low_19
Description: NF21125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21125_low_19
NF21125_low_19
[»] chr6 (8 HSPs)
chr6 (12-222)||(2911410-2911620)
chr6 (49-169)||(30929492-30929614)
chr6 (54-148)||(12677822-12677916)
chr6 (50-148)||(2470349-2470447)
chr6 (65-148)||(5611146-5611229)
chr6 (49-148)||(32134043-32134142)
chr6 (49-147)||(10008190-10008288)
chr6 (111-192)||(227394-227475)
[»] chr8 (20 HSPs)
chr8 (49-169)||(12981554-12981678)
chr8 (65-192)||(3137413-3137540)
chr8 (49-148)||(20542384-20542483)
chr8 (50-192)||(35901389-35901531)
chr8 (49-145)||(10029159-10029255)
chr8 (49-142)||(11150920-11151012)
chr8 (65-169)||(44648934-44649038)
chr8 (78-174)||(18045309-18045405)
chr8 (65-145)||(18200701-18200781)
chr8 (52-148)||(34678224-34678319)
chr8 (83-148)||(25250331-25250396)
chr8 (103-158)||(12201843-12201898)
chr8 (103-158)||(12446271-12446326)
chr8 (65-167)||(17720176-17720278)
chr8 (101-167)||(37561497-37561563)
chr8 (52-170)||(41726896-41727014)
chr8 (73-147)||(44655252-44655326)
chr8 (52-148)||(18647478-18647573)
chr8 (50-142)||(43917585-43917677)
chr8 (77-141)||(44947372-44947436)
[»] chr3 (18 HSPs)
chr3 (49-169)||(37822704-37822824)
chr3 (52-188)||(37042963-37043099)
chr3 (50-169)||(1711920-1712039)
chr3 (65-192)||(50958873-50959000)
chr3 (64-148)||(44698230-44698314)
chr3 (50-169)||(4020096-4020215)
chr3 (50-169)||(28709562-28709681)
chr3 (64-147)||(29032424-29032507)
chr3 (65-137)||(54801358-54801430)
chr3 (52-167)||(48338813-48338928)
chr3 (65-148)||(6785811-6785895)
chr3 (65-145)||(11676756-11676836)
chr3 (52-148)||(49261780-49261876)
chr3 (64-192)||(55446745-55446872)
chr3 (65-140)||(31494030-31494105)
chr3 (50-148)||(2379622-2379719)
chr3 (49-169)||(635701-635821)
chr3 (64-148)||(8326150-8326233)
[»] chr2 (19 HSPs)
chr2 (49-192)||(5525258-5525401)
chr2 (49-192)||(33609147-33609290)
chr2 (50-159)||(34390237-34390346)
chr2 (49-148)||(604730-604832)
chr2 (49-192)||(4652009-4652152)
chr2 (50-145)||(13738415-13738510)
chr2 (96-148)||(4978769-4978821)
chr2 (96-148)||(4996677-4996729)
chr2 (65-148)||(40346721-40346804)
chr2 (65-145)||(23453357-23453438)
chr2 (51-148)||(28331271-28331368)
chr2 (65-145)||(43131779-43131859)
chr2 (49-148)||(1870511-1870609)
chr2 (85-148)||(9021506-9021569)
chr2 (50-145)||(14953022-14953117)
chr2 (96-167)||(18717894-18717965)
chr2 (63-169)||(7932887-7932993)
chr2 (64-172)||(1004768-1004875)
chr2 (49-148)||(38193696-38193796)
[»] chr1 (17 HSPs)
chr1 (49-169)||(49731158-49731278)
chr1 (65-190)||(39238844-39238969)
chr1 (50-148)||(13969116-13969214)
chr1 (50-148)||(27068950-27069052)
chr1 (65-146)||(33148150-33148231)
chr1 (52-192)||(26829492-26829632)
chr1 (49-192)||(8279733-8279876)
chr1 (46-192)||(8001720-8001866)
chr1 (51-142)||(15398272-15398360)
chr1 (49-167)||(36160565-36160681)
chr1 (55-166)||(33148902-33149010)
chr1 (64-148)||(10226479-10226563)
chr1 (65-188)||(27688492-27688615)
chr1 (52-145)||(17169290-17169383)
chr1 (49-83)||(48887791-48887825)
chr1 (111-148)||(32187112-32187149)
chr1 (65-192)||(50015748-50015875)
[»] chr7 (18 HSPs)
chr7 (49-170)||(16979939-16980060)
chr7 (53-169)||(26241601-26241717)
chr7 (65-192)||(25530518-25530645)
chr7 (64-145)||(8896618-8896699)
chr7 (49-145)||(8746132-8746229)
chr7 (49-148)||(18221003-18221103)
chr7 (49-169)||(22931854-22931974)
chr7 (50-194)||(33194720-33194864)
chr7 (96-148)||(19677039-19677091)
chr7 (65-145)||(43118819-43118899)
chr7 (52-169)||(31850744-31850862)
chr7 (49-94)||(42061223-42061268)
chr7 (73-148)||(31487727-31487802)
chr7 (49-148)||(47445373-47445472)
chr7 (94-140)||(30270519-30270565)
chr7 (55-145)||(34993148-34993238)
chr7 (65-148)||(23142670-23142753)
chr7 (65-169)||(37928313-37928417)
[»] chr5 (11 HSPs)
chr5 (63-169)||(11815922-11816028)
chr5 (52-167)||(30293821-30293936)
chr5 (65-147)||(30840616-30840697)
chr5 (91-183)||(43111767-43111859)
chr5 (49-148)||(1447571-1447670)
chr5 (155-192)||(20429817-20429854)
chr5 (50-169)||(22293982-22294101)
chr5 (65-148)||(27544602-27544685)
chr5 (100-170)||(36482099-36482169)
chr5 (103-168)||(8151792-8151857)
chr5 (96-148)||(18242483-18242535)
[»] scaffold0204 (1 HSPs)
scaffold0204 (50-170)||(15361-15481)
[»] chr4 (18 HSPs)
chr4 (50-190)||(52370340-52370480)
chr4 (50-133)||(19480535-19480618)
chr4 (50-148)||(27133547-27133645)
chr4 (49-142)||(2824839-2824932)
chr4 (50-174)||(12076419-12076543)
chr4 (65-148)||(12094971-12095054)
chr4 (155-192)||(5324623-5324660)
chr4 (49-109)||(18827621-18827680)
chr4 (65-145)||(22019616-22019696)
chr4 (55-131)||(36752686-36752762)
chr4 (66-145)||(2565431-2565510)
chr4 (77-148)||(13967870-13967941)
chr4 (97-148)||(27284117-27284168)
chr4 (54-148)||(48419075-48419169)
chr4 (50-139)||(7437855-7437944)
chr4 (49-174)||(20775069-20775194)
chr4 (71-148)||(31089802-31089878)
chr4 (96-145)||(44190263-44190312)
[»] scaffold0036 (1 HSPs)
scaffold0036 (71-191)||(36551-36671)
[»] scaffold0283 (1 HSPs)
scaffold0283 (77-145)||(3350-3418)
[»] scaffold0002 (1 HSPs)
scaffold0002 (97-169)||(120714-120786)


Alignment Details
Target: chr6 (Bit Score: 163; Significance: 3e-87; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 2911620 - 2911410
Alignment:
Q  12 taataactacacctcttgcttctctatttgtgttggccattggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagc 111  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||| |    
T  2911620 taataactacacctcttgcttctctatttgtggtggccattggttaagcaattaaaacaaataagtttttaaaaaaaagtagtataatcattacttgatc 2911521  T
Q  112 aaatgtaacatcttacattttcaagacaaaatttctaattttgaattctttaaccattacctttatgacactggttagcaacatctatgatatatactct 211  Q
    ||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||    
T  2911520 aaatgtaacatcttacattttcaagacaaaacttctacttttaaattctttaaccattgcctttatgaccctggttagcaacacctatgatatatactct 2911421  T
Q  212 tatattcttgg 222  Q
    |||||| ||||    
T  2911420 tatattgttgg 2911410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 49 - 169
Target Start/End: Original strand, 30929492 - 30929614
Alignment:
Q  49 cattggttaagcaattaaaacaagtaagttttt-aagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaa-tttc 146  Q
    |||||||||||| | |||||||||||| ||||| || ||||| ||||||||| |||| |||| |||||||||||||||| ||||||||| ||||| ||||    
T  30929492 cattggttaagcgactaaaacaagtaaattttttaataaaaagtagtataattattatttgatcaaatgtaacatcttaaattttcaaggcaaaactttc 30929591  T
Q  147 taattttgaattctttaaccatt 169  Q
    || ||||  ||||||||||||||    
T  30929592 tacttttagattctttaaccatt 30929614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 12677822 - 12677916
Alignment:
Q  54 gttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    ||||||||| |||||||||||||||||||| ||||| |||| |||||||||||||  |||||||||   || ||||||  |||| ||||||||||    
T  12677822 gttaagcaactaaaacaagtaagtttttaataaaaagtagtgtaatcattacttggtcaaatgtaatcgctcacatttctaagagaaaatttcta 12677916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 148
Target Start/End: Original strand, 2470349 - 2470447
Alignment:
Q  50 attggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    ||||||||||||  ||||| | ||||||||||| |||||| | ||||||||||||||||| ||||  ||| |||||| ||||  |||||||| ||||||    
T  2470349 attggttaagcatctaaaataggtaagtttttatgaaaaagttgtataatcattacttgaacaaaaataatatcttatatttcaaagacaaactttcta 2470447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 5611229 - 5611146
Alignment:
Q  65 aaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    |||||||||||||||||| ||| || | ||||||| |||| ||||  ||| ||||||||||| ||||  |||||||||||||||    
T  5611229 aaaacaagtaagtttttatgaataagttgtataattattatttgattaaaagtaacatcttatatttctaagacaaaatttcta 5611146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 148
Target Start/End: Original strand, 32134043 - 32134142
Alignment:
Q  49 cattggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    |||||||||||||  ||||| |||||||||||   |||||| | || ||||||||||||||  |||  |||||||||| ||| |||| ||||||||||||    
T  32134043 cattggttaagcatctaaaataagtaagttttcttgaaaaagttgtgtaatcattacttgataaaaaataacatcttatattctcaaaacaaaatttcta 32134142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 147
Target Start/End: Original strand, 10008190 - 10008288
Alignment:
Q  49 cattggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttct 147  Q
    ||||||||||||||  |||| |||||||||||||  ||||| | || |||| ||||||||| |||| |||||   ||| ||||| ||||||||||||||    
T  10008190 cattggttaagcaaccaaaagaagtaagtttttattaaaaagtggtgtaattattacttgatcaaaagtaaccgtttatatttttaagacaaaatttct 10008288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 192
Target Start/End: Original strand, 227394 - 227475
Alignment:
Q  111 caaatgtaacatcttacattttcaagacaaaatttctaattttgaattctttaaccattacctttatgacactggttagcaa 192  Q
    |||| ||||||||||| |||||||| | |||||||||| || |  |||| ||||||||| || | | |||||||||||||||    
T  227394 caaaagtaacatcttatattttcaaaaaaaaatttctatttatagattccttaaccattgccctaaggacactggttagcaa 227475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 49 - 169
Target Start/End: Original strand, 12981554 - 12981678
Alignment:
Q  49 cattggttaagcaattaaaacaagtaagtttttaagaaaaaata----gtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatt 144  Q
    |||||||||||||  ||||| |||||||||||||| ||||| ||    ||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  12981554 cattggttaagcacctaaaataagtaagtttttaataaaaagtactccgtataatcattacttggtcaaatgtaacatcttacattttcaagacaaaatt 12981653  T
Q  145 tctaattttgaattctttaaccatt 169  Q
    ||||||||||||||| |||||||||    
T  12981654 tctaattttgaattccttaaccatt 12981678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 65 - 192
Target Start/End: Original strand, 3137413 - 3137540
Alignment:
Q  65 aaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaattttgaattctttaa 164  Q
    ||||||| ||||||| || |||||| | || |||| ||||||||| |||| ||||||||||||||||||||||||||||||||| || ||||||  ||||    
T  3137413 aaaacaaataagtttatatgaaaaagttgtgtaataattacttgatcaaaagtaacatcttacattttcaagacaaaatttctatttctgaatttcttaa 3137512  T
Q  165 ccattacctttatgacactggttagcaa 192  Q
    ||||| || | | | |||||||||||||    
T  3137513 ccattgccctgagggcactggttagcaa 3137540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 49 - 148
Target Start/End: Original strand, 20542384 - 20542483
Alignment:
Q  49 cattggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    |||||||||||||   ||||| ||||||||||||||||||||  || |||||||||||| | |||| ||||||||||| |||| |||||| |||||||||    
T  20542384 cattggttaagcatccaaaacgagtaagtttttaagaaaaaagtgtgtaatcattacttaatcaaaagtaacatcttatatttccaagacgaaatttcta 20542483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 50 - 192
Target Start/End: Complemental strand, 35901531 - 35901389
Alignment:
Q  50 attggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaa 149  Q
    ||||||||||||   |||||||||||||||||| |||||| | ||  |||||||| || |  ||| |||||||||||||||||||| ||||||||||||     
T  35901531 attggttaagcatccaaaacaagtaagtttttatgaaaaagttgtgcaatcattatttaattaaaagtaacatcttacattttcaaaacaaaatttctat 35901432  T
Q  150 ttttgaattctttaaccattacctttatgacactggttagcaa 192  Q
    || |  |||| |||||||||||  | | |||||| ||||||||    
T  35901431 ttgtagattccttaaccattactgtgaagacactagttagcaa 35901389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 49 - 145
Target Start/End: Original strand, 10029159 - 10029255
Alignment:
Q  49 cattggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaattt 145  Q
    |||||||||||||   ||| ||||||| |||||| |||||| | ||||||||||||||||| |||| ||||||||||| |||| ||||| |||||||    
T  10029159 cattggttaagcatccaaatcaagtaaatttttatgaaaaagttgtataatcattacttgatcaaaagtaacatcttatatttccaagataaaattt 10029255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 142
Target Start/End: Original strand, 11150920 - 11151012
Alignment:
Q  49 cattggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaa 142  Q
    ||||||||||||| | |||| |||||||||||||| ||||||| || ||||||||| |||| |||| ||||||||||| ||||  |||||||||    
T  11150920 cattggttaagcattcaaaataagtaagtttttaa-aaaaaattgtgtaatcattatttgatcaaaagtaacatcttatatttctaagacaaaa 11151012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 169
Target Start/End: Complemental strand, 44649038 - 44648934
Alignment:
Q  65 aaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaattttgaattctttaa 164  Q
    ||||||| |||||||| | |||||| | || |||||||||||| | |||| ||||||| ||| ||||||||||||||||||||| || |  |||| ||||    
T  44649038 aaaacaaataagttttcatgaaaaagttgtgtaatcattactttatcaaaagtaacattttatattttcaagacaaaatttctatttgtagattccttaa 44648939  T
Q  165 ccatt 169  Q
    |||||    
T  44648938 ccatt 44648934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 18045309 - 18045405
Alignment:
Q  78 ttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaattttgaattctttaaccattacctt 174  Q
    ||||| |||||||| || |||| ||||| ||| |||| ||||||| ||| |||||||||||||||||| || || |  |||||||||||||| ||||    
T  18045309 ttttatgaaaaaattgtgtaattattacatgaacaaaagtaacatattatattttcaagacaaaatttttagttgtagattctttaaccattgcctt 18045405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 145
Target Start/End: Complemental strand, 18200781 - 18200701
Alignment:
Q  65 aaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaattt 145  Q
    |||| ||||||| ||||| |||||||| || |||||||||||| | |||| ||||||| ||| ||||| ||||||||||||    
T  18200781 aaaataagtaagcttttatgaaaaaattgtgtaatcattacttaatcaaaagtaacatgttatatttttaagacaaaattt 18200701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 148
Target Start/End: Complemental strand, 34678319 - 34678224
Alignment:
Q  52 tggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    |||||||||| | |||||||| || |||| || |||||||  | |||| ||||||||| |||| ||||||| |||||||||||||||||| ||||||    
T  34678319 tggttaagcattcaaaacaagcaactttt-aataaaaaattatgtaattattacttgatcaaaagtaacattttacattttcaagacaaattttcta 34678224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 25250331 - 25250396
Alignment:
Q  83 agaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    ||||||| | ||| ||||||||||||| ||||  |||||| ||| |||||||||||||||||||||    
T  25250331 agaaaaagtggtaaaatcattacttgatcaaaaataacatattatattttcaagacaaaatttcta 25250396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 158
Target Start/End: Original strand, 12201843 - 12201898
Alignment:
Q  103 tacttgagcaaatgtaacatcttacattttcaagacaaaatttctaattttgaatt 158  Q
    ||||||| |||| |||||| |||| |||| |||||||||||||||| |||||||||    
T  12201843 tacttgatcaaaagtaacagcttatatttccaagacaaaatttctatttttgaatt 12201898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 158
Target Start/End: Original strand, 12446271 - 12446326
Alignment:
Q  103 tacttgagcaaatgtaacatcttacattttcaagacaaaatttctaattttgaatt 158  Q
    ||||||| |||| |||||| |||| |||| |||||||||||||||| |||||||||    
T  12446271 tacttgatcaaaagtaacagcttatatttccaagacaaaatttctatttttgaatt 12446326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 167
Target Start/End: Complemental strand, 17720278 - 17720176
Alignment:
Q  65 aaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaattttgaattctttaa 164  Q
    |||||||  ||||||| | |||||| | || |||||||||| ||| ||||  |||||||||| |||||||||| || ||||||| || |  |||||||||    
T  17720278 aaaacaaacaagttttcatgaaaaagttgtgtaatcattacatgatcaaaaataacatcttatattttcaagaaaatatttctatttatagattctttaa 17720179  T
Q  165 cca 167  Q
    |||    
T  17720178 cca 17720176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 167
Target Start/End: Complemental strand, 37561563 - 37561497
Alignment:
Q  101 attacttgagcaaatgtaacatcttacattttcaagacaaaatttctaattttgaattctttaacca 167  Q
    ||||||||| |||| |||| |||||| |||||||| | |||||||||| || | |||||||||||||    
T  37561563 attacttgatcaaaagtaaaatcttatattttcaaaataaaatttctatttataaattctttaacca 37561497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 170
Target Start/End: Original strand, 41726896 - 41727014
Alignment:
Q  52 tggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaatt 151  Q
    ||||||||||  ||||| ||||||||||||| |||||||   | |||||||||||| |  |||  |||||| ||| |||| ||||||||||||| || ||    
T  41726896 tggttaagcatctaaaataagtaagtttttatgaaaaaactatgtaatcattactttataaaaaataacattttatatttccaagacaaaatttttattt 41726995  T
Q  152 ttgaattctttaaccatta 170  Q
     |  |||| ||||||||||    
T  41726996 gtagattccttaaccatta 41727014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 44655326 - 44655252
Alignment:
Q  73 taagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttct 147  Q
    ||||||||||| ||||| |||| |||| ||||||||  ||| ||||||| ||||  ||| |||||||||||||||    
T  44655326 taagtttttaataaaaagtagtgtaattattacttggtcaattgtaacaacttatttttccaagacaaaatttct 44655252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 148
Target Start/End: Complemental strand, 18647573 - 18647478
Alignment:
Q  52 tggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    |||||||||| ||||||||||||| |||  | |||||||| || ||||||| | || | ||||  |||||||||| ||||| |||| ||||||||||    
T  18647573 tggttaagcatttaaaacaagtaaatttccatgaaaaaattgtgtaatcatcattttatcaaa-ataacatcttatatttttaagataaaatttcta 18647478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 142
Target Start/End: Original strand, 43917585 - 43917677
Alignment:
Q  50 attggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaa 142  Q
    ||||||||||||   ||||||||||| ||||||  ||||||| || |||| |||| ||||  ||| |||||  |||| |||||||||||||||    
T  43917585 attggttaagcatccaaaacaagtaaatttttataaaaaaattgtgtaattattatttgattaaaagtaacgccttatattttcaagacaaaa 43917677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 44947372 - 44947436
Alignment:
Q  77 tttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaa 141  Q
    |||||| |||||| | ||||||||| ||||| | |||| ||||||| ||| ||||||||||||||    
T  44947372 tttttatgaaaaagttgtataatcaatactttatcaaaagtaacattttatattttcaagacaaa 44947436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 49 - 169
Target Start/End: Original strand, 37822704 - 37822824
Alignment:
Q  49 cattggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    |||||||||| ||||||||||| |||||||||||| ||||| |||||| |||||||| ||| ||||||||||||||||||||||||| | ||||| ||||    
T  37822704 cattggttaaacaattaaaacatgtaagtttttaataaaaactagtattatcattacctgatcaaatgtaacatcttacattttcaacataaaatatcta 37822803  T
Q  149 attttgaattctttaaccatt 169  Q
     ||||| ||||||||||||||    
T  37822804 tttttggattctttaaccatt 37822824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 52 - 188
Target Start/End: Complemental strand, 37043099 - 37042963
Alignment:
Q  52 tggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaatt 151  Q
    ||||||| ||| |||| ||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||| |||| || |||||||||| || ||  |    
T  37043099 tggttaaacaactaaatcaagtaagtttttaataaaaagtagtataatcattacttgatcaaatgtaacatcctacaattacaagacaaaacttttacat 37043000  T
Q  152 ttgaattctttaaccattacctttatgacactggtta 188  Q
    |||||||| |||| ||| ||| ||| |||||||||||    
T  37042999 ttgaattccttaatcatcacccttaggacactggtta 37042963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 50 - 169
Target Start/End: Complemental strand, 1712039 - 1711920
Alignment:
Q  50 attggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaa 149  Q
    ||||||||| ||| ||||| |||||| ||||||| ||||||||||||||| |||||||   |||||||||||||||| |||||||||||||||||| |||    
T  1712039 attggttaaacaactaaaataagtaaatttttaataaaaaatagtataattattacttagtcaaatgtaacatcttatattttcaagacaaaatttataa 1711940  T
Q  150 ttttgaattctttaaccatt 169  Q
    ||||  |||| |||||||||    
T  1711939 ttttagattccttaaccatt 1711920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 65 - 192
Target Start/End: Original strand, 50958873 - 50959000
Alignment:
Q  65 aaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaattttgaattctttaa 164  Q
    |||||||||||||||||| |||||||| || |||||||| ||||| ||||  |||||| ||| |||| |||||||||||||||| ||   ||||||||||    
T  50958873 aaaacaagtaagtttttatgaaaaaattgtgtaatcatttcttgatcaaaaataacatgttatatttccaagacaaaatttctatttgaaaattctttaa 50958972  T
Q  165 ccattacctttatgacactggttagcaa 192  Q
     |||| || | | |||||||||||||||    
T  50958973 tcattgccctaaggacactggttagcaa 50959000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 44698230 - 44698314
Alignment:
Q  64 taaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    |||||||| |||||||||| |||||||| || ||||||||| || | |||| ||||||||||| |||||||||||||||||||||    
T  44698230 taaaacaaataagtttttatgaaaaaattgtgtaatcattattttatcaaaagtaacatcttatattttcaagacaaaatttcta 44698314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 169
Target Start/End: Original strand, 4020096 - 4020215
Alignment:
Q  50 attggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaa 149  Q
    |||||||||| ||  |||||||||||||||||| |||||||| || |||| ||||||| | ||||  |||||| ||| |||||||||||||||||||||     
T  4020096 attggttaagtaaccaaaacaagtaagtttttatgaaaaaattgtgtaataattacttaatcaaaattaacattttatattttcaagacaaaatttctat 4020195  T
Q  150 ttttgaattctttaaccatt 169  Q
    || |  |||| |||||||||    
T  4020196 ttgtagattccttaaccatt 4020215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 169
Target Start/End: Complemental strand, 28709681 - 28709562
Alignment:
Q  50 attggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaa 149  Q
    |||||||||||| | |||| |||||||||| ||  ||||| | |||||||||||| |||| |||| ||||||| ||| |||||||||| ||||||||||     
T  28709681 attggttaagcattcaaaataagtaagtttctataaaaaagttgtataatcattatttgatcaaaagtaacattttatattttcaagataaaatttctat 28709582  T
Q  150 ttttgaattctttaaccatt 169  Q
    || |  ||||||||||||||    
T  28709581 ttatagattctttaaccatt 28709562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 64 - 147
Target Start/End: Original strand, 29032424 - 29032507
Alignment:
Q  64 taaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttct 147  Q
    ||||||||| ||||||||| |||||| | || |||||||||||||| |||| ||||||||||| ||||| ||||||||||||||    
T  29032424 taaaacaagcaagtttttatgaaaaagttgtgtaatcattacttgatcaaaagtaacatcttatatttttaagacaaaatttct 29032507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 54801430 - 54801358
Alignment:
Q  65 aaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaaga 137  Q
    |||| ||||||||||||| |||||||| || |||| ||||||| |||||| ||||||||||| ||||||||||    
T  54801430 aaaataagtaagtttttatgaaaaaattgtgtaattattactttagcaaaagtaacatcttatattttcaaga 54801358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 52 - 167
Target Start/End: Original strand, 48338813 - 48338928
Alignment:
Q  52 tggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaatt 151  Q
    ||||||||||   ||||||||||||||||||  ||||| | || |||| ||||||| | ||||  |||||||||| |||| ||||| |||||||||| ||    
T  48338813 tggttaagcatccaaaacaagtaagtttttataaaaaagttgtgtaataattactttatcaaaaataacatcttatatttccaagataaaatttctattt 48338912  T
Q  152 ttgaattctttaacca 167  Q
     | |||||||||||||    
T  48338913 ataaattctttaacca 48338928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 6785895 - 6785811
Alignment:
Q  65 aaaacaagtaagtttttaagaaaaaata-gtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    |||||||| ||||||| | ||||||| | || |||||||||||||| |||| ||||||| ||| ||||||||||||||| |||||    
T  6785895 aaaacaagcaagttttcatgaaaaaagatgtgtaatcattacttgatcaaaagtaacattttatattttcaagacaaaaattcta 6785811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 145
Target Start/End: Complemental strand, 11676836 - 11676756
Alignment:
Q  65 aaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaattt 145  Q
    |||||||| ||||||| |||||||||| || | ||||||| |||| |||| ||||| ||||  ||||||||||||||||||    
T  11676836 aaaacaagcaagttttcaagaaaaaattgtgttatcattatttgatcaaaagtaacgtcttttattttcaagacaaaattt 11676756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 148
Target Start/End: Original strand, 49261780 - 49261876
Alignment:
Q  52 tggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    ||||||||||   ||||||||||  |||| | |||||||| || |||| ||||||  | |||| ||||||||||| |||| ||||||||||||||||    
T  49261780 tggttaagcatccaaaacaagtacattttcatgaaaaaattgtgtaattattactctatcaaaagtaacatcttatatttacaagacaaaatttcta 49261876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 192
Target Start/End: Original strand, 55446745 - 55446872
Alignment:
Q  64 taaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaattttgaattcttta 163  Q
    ||||| |||||||||||||  ||||| | || |||||||||||| |  ||| ||||||||||| |||| ||||||||||||| || || |  ||||||||    
T  55446745 taaaagaagtaagtttttat-aaaaagttgtgtaatcattactttattaaaagtaacatcttatatttccaagacaaaatttttatttgtagattcttta 55446843  T
Q  164 accattacctttatgacactggttagcaa 192  Q
      |||| || | |||||||| ||||||||    
T  55446844 gtcattgccctgatgacactagttagcaa 55446872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 140
Target Start/End: Complemental strand, 31494105 - 31494030
Alignment:
Q  65 aaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaa 140  Q
    |||||||||||||||||| |||||||| || ||||||||| ||||  |||  |||| ||||| |||| ||||||||    
T  31494105 aaaacaagtaagtttttatgaaaaaattgtgtaatcattatttgattaaaattaacttcttatatttccaagacaa 31494030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 2379719 - 2379622
Alignment:
Q  50 attggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    |||| ||||||||| |||| |||||||||||||  ||||| |||| ||||  ||||||||  ||| | |||| ||||||||||||||||| | ||||||    
T  2379719 attgattaagcaatcaaaataagtaagtttttattaaaaagtagtgtaattcttacttgattaaa-ggaacaacttacattttcaagacagagtttcta 2379622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 169
Target Start/End: Complemental strand, 635821 - 635701
Alignment:
Q  49 cattggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    |||||||||||||   ||||||  ||||||||||   |||| | || ||||||||| || | |||| |||||||||||  | ||||||||||||||||||    
T  635821 cattggttaagcatccaaaacatataagtttttattgaaaagttgtgtaatcattatttaatcaaaagtaacatcttatttattcaagacaaaatttcta 635722  T
Q  149 attttgaattctttaaccatt 169  Q
     || |  |||| |||||||||    
T  635721 tttgtagattccttaaccatt 635701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 148
Target Start/End: Original strand, 8326150 - 8326233
Alignment:
Q  64 taaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    |||||||| |||||||||| |||||  | || |||||||| ||||| |||| ||||||| ||| ||||| || ||||||||||||    
T  8326150 taaaacaaataagtttttatgaaaag-tggtgtaatcattgcttgatcaaaagtaacatattatatttttaaaacaaaatttcta 8326233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 49 - 192
Target Start/End: Complemental strand, 5525401 - 5525258
Alignment:
Q  49 cattggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    |||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| |||  ||||||||||||||||| |||||||||||||| || ||    
T  5525401 cattggttaagcaactaaaataagtaagtttttaataaaaagtagtataatcattatttggtcaaatgtaacatcttacgttttcaagacaaaactttta 5525302  T
Q  149 attttgaattctttaaccattacctttatgacactggttagcaa 192  Q
    ||||| ||||| |||| |||| |  ||| |||||||||| ||||    
T  5525301 attttaaattccttaatcattgctcttaggacactggttggcaa 5525258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 49 - 192
Target Start/End: Complemental strand, 33609290 - 33609147
Alignment:
Q  49 cattggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    |||||||||||||||||||| || ||||||||||| |||||||||| || | |||| |||| |||||||||||||||||||||  ||||  |||||||||    
T  33609290 cattggttaagcaattaaaataaataagtttttaataaaaaatagtgtacttattatttgatcaaatgtaacatcttacatttctaagatcaaatttcta 33609191  T
Q  149 attttgaattctttaaccattacctttatgacactggttagcaa 192  Q
     |||||||||| |||| |||| |||||| |||| ||||||||||    
T  33609190 cttttgaattccttaatcattgcctttaagacattggttagcaa 33609147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 50 - 159
Target Start/End: Original strand, 34390237 - 34390346
Alignment:
Q  50 attggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaa 149  Q
    |||| |||||||| |||||||| ||| ||||||| ||||||||||||||||||| ||||| ||||| ||| | ||||||||||||| | |||| |||||     
T  34390237 attgattaagcaactaaaacaactaaatttttaataaaaaatagtataatcattgcttgatcaaatataaaaacttacattttcaaaagaaaacttctac 34390336  T
Q  150 ttttgaattc 159  Q
    || |||||||    
T  34390337 ttatgaattc 34390346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 49 - 148
Target Start/End: Original strand, 604730 - 604832
Alignment:
Q  49 cattggttaagcaattaaaacaa---gtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaattt 145  Q
    |||||||||||||  ||||||||   |||| ||||||| ||||| ||||||||||||||||||  ||||||||||||||||||||| ||| | |||||||    
T  604730 cattggttaagcatctaaaacaaatagtaaatttttaataaaaagtagtataatcattacttggtcaaatgtaacatcttacatttccaaaagaaaattt 604829  T
Q  146 cta 148  Q
    |||    
T  604830 cta 604832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 49 - 192
Target Start/End: Complemental strand, 4652152 - 4652009
Alignment:
Q  49 cattggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    ||||| |||||||| ||||| |||||||||||| | |||||   || |||||||||||||   |||||||||| |||||||||||||||||||| ||| |    
T  4652152 cattgattaagcaaataaaataagtaagttttttataaaaatatgtgtaatcattacttggttaaatgtaacagcttacattttcaagacaaaacttcaa 4652053  T
Q  149 attttgaattctttaaccattacctttatgacactggttagcaa 192  Q
     || || ||||||||| || |  | ||| |||||||||||||||    
T  4652052 cttatggattctttaatcaatgtccttaggacactggttagcaa 4652009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 50 - 145
Target Start/End: Complemental strand, 13738510 - 13738415
Alignment:
Q  50 attggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaattt 145  Q
    ||||||||||||   ||||||||||||||||||  ||||||| || |||||||||||| | || | ||||||||||| |||||||| |||||||||    
T  13738510 attggttaagcatccaaaacaagtaagtttttataaaaaaattgtgtaatcattactttatcagaagtaacatcttatattttcaaaacaaaattt 13738415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 4978821 - 4978769
Alignment:
Q  96 taatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    |||||||||||||| |||| ||||||||||| ||||||||||||||| |||||    
T  4978821 taatcattacttgatcaaaagtaacatcttatattttcaagacaaaacttcta 4978769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 4996729 - 4996677
Alignment:
Q  96 taatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    |||||||||||||| |||| ||||||||||| ||||||||||||||| |||||    
T  4996729 taatcattacttgatcaaaagtaacatcttatattttcaagacaaaacttcta 4996677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 148
Target Start/End: Original strand, 40346721 - 40346804
Alignment:
Q  65 aaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    |||| ||||||||||||| |||||| | ||  |||||||| |||| ||||  |||||||||| |||||||| ||||||||||||    
T  40346721 aaaataagtaagtttttatgaaaaagttgtgcaatcattatttgatcaaaaataacatcttatattttcaatacaaaatttcta 40346804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 145
Target Start/End: Original strand, 23453357 - 23453438
Alignment:
Q  65 aaaacaagtaagtttttaagaaaaaa-tagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaattt 145  Q
    |||||||| ||||||||| | ||||| | || ||||| ||| |||| |||| ||||||||||| ||||||||||||||||||    
T  23453357 aaaacaagcaagtttttatggaaaaagttgtgtaatctttatttgatcaaaagtaacatcttatattttcaagacaaaattt 23453438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 148
Target Start/End: Complemental strand, 28331368 - 28331271
Alignment:
Q  51 ttggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    ||||||||||| | |||| ||||||||||||| |||| | | || |||||||||||||| ||||  ||| || ||| |||| |||||||||| |||||    
T  28331368 ttggttaagcattcaaaataagtaagtttttatgaaagagttgtgtaatcattacttgatcaaaaataatattttatatttccaagacaaaacttcta 28331271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 145
Target Start/End: Complemental strand, 43131859 - 43131779
Alignment:
Q  65 aaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaattt 145  Q
    ||||||||||||||||||  ||||  |||| |||| ||||||||| |||| |||  | |||||||||| ||||||||||||    
T  43131859 aaaacaagtaagtttttataaaaaggtagtgtaattattacttgatcaaaagtataaacttacatttttaagacaaaattt 43131779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 148
Target Start/End: Complemental strand, 1870609 - 1870511
Alignment:
Q  49 cattggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    ||||||||||||||  ||||||||||| ||||||  ||||||| || |||| ||||||| | |||| || | | |||| |||||||||||||| ||||||    
T  1870609 cattggttaagcaacaaaaacaagtaactttttataaaaaaat-gtgtaattattacttaatcaaaagtcaaagcttatattttcaagacaaattttcta 1870511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 148
Target Start/End: Original strand, 9021506 - 9021569
Alignment:
Q  85 aaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    |||||||||| ||||||||| ||   ||||  ||||||||||||||| ||||||||||||||||    
T  9021506 aaaaaatagtgtaatcattatttagtcaaaaataacatcttacatttccaagacaaaatttcta 9021569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 145
Target Start/End: Original strand, 14953022 - 14953117
Alignment:
Q  50 attggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaattt 145  Q
    ||||||||||||   |||| |||||| ||| ||| ||||||| || ||||||||||| || ||||  |||||| ||| ||||| ||||||||||||    
T  14953022 attggttaagcatccaaaataagtaaatttgtaaaaaaaaattgtctaatcattactcgatcaaaaataacattttatatttttaagacaaaattt 14953117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 18717894 - 18717965
Alignment:
Q  96 taatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaattttgaattctttaacca 167  Q
    |||||||||||||| |||| ||||||||||| ||||| || | |||||||||| || | ||||| |||||||    
T  18717894 taatcattacttgatcaaaagtaacatcttatatttttaaaataaaatttctatttgtaaattccttaacca 18717965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 169
Target Start/End: Complemental strand, 7932993 - 7932887
Alignment:
Q  63 ttaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaattttgaattcttt 162  Q
    |||||| ||||||||||||| |||||| | ||  ||||||||||| | | || |||| |||||||||||  || |||||||||||| || |  |||||||    
T  7932993 ttaaaataagtaagtttttacgaaaaagttgtgcaatcattactttatccaaagtaaaatcttacatttctaaaacaaaatttctatttgtagattcttt 7932894  T
Q  163 aaccatt 169  Q
    || ||||    
T  7932893 aatcatt 7932887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 172
Target Start/End: Complemental strand, 1004875 - 1004768
Alignment:
Q  64 taaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaattttgaattcttta 163  Q
    ||||||||  ||||||||| |||||| | || ||||||| | || | |||| |||| || ||| ||||||||||||||||||||| || |  |||| |||    
T  1004875 taaaacaaaaaagtttttatgaaaaagttgtgtaatcataattt-atcaaaagtaatattttatattttcaagacaaaatttctatttgtagattcctta 1004777  T
Q  164 accattacc 172  Q
    |||||||||    
T  1004776 accattacc 1004768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 148
Target Start/End: Complemental strand, 38193796 - 38193696
Alignment:
Q  49 cattggttaagcaattaaaacaagtaagtttttaagaaaaaa-tagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttct 147  Q
    |||||||||||||||||| |||  |||||||||| ||||||| |||| |||| |||| || | ||||  ||| | |||||||||| || | |||||||||    
T  38193796 cattggttaagcaattaatacagttaagtttttatgaaaaaagtagtgtaattattatttcatcaaaaataaaaacttacatttttaaaataaaatttct 38193697  T
Q  148 a 148  Q
    |    
T  38193696 a 38193696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 49 - 169
Target Start/End: Complemental strand, 49731278 - 49731158
Alignment:
Q  49 cattggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    |||||||||| ||| |||||||||||||||||||| ||||| ||||||||| |||| |||  ||||||||||||||||||| |||||||||||| |||||    
T  49731278 cattggttaaacaactaaaacaagtaagtttttaataaaaagtagtataattattatttggtcaaatgtaacatcttacatcttcaagacaaaacttcta 49731179  T
Q  149 attttgaattctttaaccatt 169  Q
     ||||| |||| |||||||||    
T  49731178 cttttggattccttaaccatt 49731158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 65 - 190
Target Start/End: Original strand, 39238844 - 39238969
Alignment:
Q  65 aaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaattttgaattctttaa 164  Q
    ||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||| |||||||||| |||| ||||||| || || || |||| ||||    
T  39238844 aaaacaagtaagtttttaataaaaaatagtgtaatcattacttgatcaaatgtaacaacttacatttttaagagaaaatttttatttatggattccttaa 39238943  T
Q  165 ccattacctttatgacactggttagc 190  Q
    ||| | || ||||| |||| ||||||    
T  39238944 ccaatgcccttatgccactagttagc 39238969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 13969214 - 13969116
Alignment:
Q  50 attggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    |||||||||||||  |||||||||||||||||| |||||||| || |||| ||||||| |  ||| ||||||| ||| |||||||||||||||||||||    
T  13969214 attggttaagcaaccaaaacaagtaagtttttatgaaaaaattgtgtaataattacttaattaaaagtaacattttatattttcaagacaaaatttcta 13969116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 50 - 148
Target Start/End: Complemental strand, 27069052 - 27068950
Alignment:
Q  50 attggttaagcaattaaaacaagtaagtttttaagaaaaaatag----tataatcattacttgagcaaatgtaacatcttacattttcaagacaaaattt 145  Q
    ||||||||||||||| |||||||||||||||||| ||||||||     ||||| ||||| |||  ||||||||||||||||||||| |||||||||| ||    
T  27069052 attggttaagcaattgaaacaagtaagtttttaataaaaaataaataatataagcattatttggccaaatgtaacatcttacatttccaagacaaaactt 27068953  T
Q  146 cta 148  Q
    |||    
T  27068952 cta 27068950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 65 - 146
Target Start/End: Complemental strand, 33148231 - 33148150
Alignment:
Q  65 aaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttc 146  Q
    |||||||||||||||||| |||||||| || |||||||||||||| |||| ||| ||||||| ||||| |||||||||||||    
T  33148231 aaaacaagtaagtttttatgaaaaaattgtgtaatcattacttgatcaaaagtagcatcttatatttttaagacaaaatttc 33148150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 52 - 192
Target Start/End: Original strand, 26829492 - 26829632
Alignment:
Q  52 tggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaatt 151  Q
    ||||||||||  ||||| |||||| |||| | |||||| | || |||||||||||| | |||| ||||||||||| |||| |||||||||||||||||||    
T  26829492 tggttaagcatctaaaataagtaaattttcatgaaaaagttgtgtaatcattactttatcaaaagtaacatcttatatttccaagacaaaatttctaatt 26829591  T
Q  152 ttgaattctttaaccattacctttatgacactggttagcaa 192  Q
     | ||||  ||||||||| || ||| | |||| ||||||||    
T  26829592 gtaaatttcttaaccattgcccttagggcacttgttagcaa 26829632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 49 - 192
Target Start/End: Original strand, 8279733 - 8279876
Alignment:
Q  49 cattggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    |||||||||| ||| |||||||| |||| |||||| ||||  | |||||||||||| ||   |||||||||||||||| ||||||||||||||| |||||    
T  8279733 cattggttaatcaactaaaacaattaagattttaataaaacgttgtataatcattatttagtcaaatgtaacatcttatattttcaagacaaaacttcta 8279832  T
Q  149 attttgaattctttaaccattacctttatgacactggttagcaa 192  Q
      | || |||| |||| |||| || ||| | |||||||||||||    
T  8279833 catctggattccttaatcattgccgttagggcactggttagcaa 8279876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 46 - 192
Target Start/End: Complemental strand, 8001866 - 8001720
Alignment:
Q  46 ggccattggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaattt 145  Q
    ||||| ||||||||||  |||||||||||| |||| | | |||| | || |||||||||||| | |||| ||||||||||| |||||||||| |||||||    
T  8001866 ggccaatggttaagcatctaaaacaagtaaattttcatgtaaaagttgtgtaatcattactttatcaaaagtaacatcttatattttcaagataaaattt 8001767  T
Q  146 ctaattttgaattctttaaccattacctttatgacactggttagcaa 192  Q
    ||| || |  |||| ||||||||| || | | | |||||||||||||    
T  8001766 ctatttctagattccttaaccattgccctgagggcactggttagcaa 8001720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 142
Target Start/End: Complemental strand, 15398360 - 15398272
Alignment:
Q  51 ttggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaa 142  Q
    ||||||||| ||||||||||| |||||||||||  |||| |||||| ||   ||||||  ||||||||||||||||||||||||||||||||    
T  15398360 ttggttaagtaattaaaacaaataagtttttaattaaaagtagtattat---tacttggtcaaatgtaacatcttacattttcaagacaaaa 15398272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 49 - 167
Target Start/End: Original strand, 36160565 - 36160681
Alignment:
Q  49 cattggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    |||||||||||||||||||||||||||||| |||| ||||| |||| |||| |||||||   ||||||||  | |||| ||||  ||||||||| |||||    
T  36160565 cattggttaagcaattaaaacaagtaagttcttaataaaaagtagtgtaattattactttgtcaaatgta--agcttatatttctaagacaaaacttcta 36160662  T
Q  149 attttgaattctttaacca 167  Q
     || || ||||||||||||    
T  36160663 tttatggattctttaacca 36160681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 55 - 166
Target Start/End: Original strand, 33148902 - 33149010
Alignment:
Q  55 ttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaattttg 154  Q
    |||||||| ||||| |||||||||||||| ||||| |||| |||| |||||||||  |   |||||| ||||| ||||||||||||| |||||| || ||    
T  33148902 ttaagcaactaaaataagtaagtttttaataaaaagtagtgtaattattacttgatta---gtaacaacttactttttcaagacaaattttctacttatg 33148998  T
Q  155 aattctttaacc 166  Q
     |||||||||||    
T  33148999 gattctttaacc 33149010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 148
Target Start/End: Complemental strand, 10226563 - 10226479
Alignment:
Q  64 taaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    ||||||| ||||||||| | |||||| | || |||||||||||| | ||||  |||||||||| |||||||||||||||||||||    
T  10226563 taaaacaggtaagttttcatgaaaaagttgtgtaatcattactttatcaaaattaacatcttatattttcaagacaaaatttcta 10226479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 188
Target Start/End: Original strand, 27688492 - 27688615
Alignment:
Q  65 aaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaattt-tgaattcttta 163  Q
    |||||||||||||||| | |||||| | || |||||||||||| | |||| ||||||||||| |||||||| | ||||||| |||||| |  |||| |||    
T  27688492 aaaacaagtaagttttcatgaaaaacttgtgtaatcattactttatcaaaagtaacatcttatattttcaatataaaattt-taatttgtagattcctta 27688590  T
Q  164 accattacctttatgacactggtta 188  Q
    || ||| |||| |||||||||||||    
T  27688591 acaatttccttgatgacactggtta 27688615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 145
Target Start/End: Complemental strand, 17169383 - 17169290
Alignment:
Q  52 tggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaattt 145  Q
    ||||||||||  |||||||| |||||||| | |||||| | ||||||| ||||||| | ||||  |||||||||| ||||||||||||| ||||    
T  17169383 tggttaagcatctaaaacaaataagttttcatgaaaaagttgtataataattactttatcaaaaataacatcttatattttcaagacaatattt 17169290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 48887791 - 48887825
Alignment:
Q  49 cattggttaagcaattaaaacaagtaagtttttaa 83  Q
    |||||||||||||| ||||||||||||||||||||    
T  48887791 cattggttaagcaactaaaacaagtaagtttttaa 48887825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 148
Target Start/End: Original strand, 32187112 - 32187149
Alignment:
Q  111 caaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  32187112 caaaagtaacatcttatattttcaagacaaaatttcta 32187149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 192
Target Start/End: Complemental strand, 50015875 - 50015748
Alignment:
Q  65 aaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaattttga-attcttta 163  Q
    ||||||| ||| |||||| |||||| | |||||||| || ||||| |||| |||| ||| || ||||| ||||||||||| || ||||||| |||| |||    
T  50015875 aaaacaaataaatttttatgaaaaagttgtataatcgttgcttgatcaaaagtaatatcatatatttttaagacaaaattcct-attttgagattcctta 50015777  T
Q  164 accattacctttatgacactggttagcaa 192  Q
    | ||||| | | | | |||||||||||||    
T  50015776 atcattatcctaagggcactggttagcaa 50015748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 49 - 170
Target Start/End: Original strand, 16979939 - 16980060
Alignment:
Q  49 cattggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    |||||||||||||   ||||||||||| |||||| |||||| | || | || |||||| || |||| ||||||||||| |||||||||||||||||||||    
T  16979939 cattggttaagcatccaaaacaagtaaatttttatgaaaaagttgtgtgattattactcgatcaaaagtaacatcttatattttcaagacaaaatttcta 16980038  T
Q  149 attttgaattctttaaccatta 170  Q
    ||| | ||||||||||||||||    
T  16980039 attgtaaattctttaaccatta 16980060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 53 - 169
Target Start/End: Complemental strand, 26241717 - 26241601
Alignment:
Q  53 ggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaattt 152  Q
    |||||||||| |||||||||||| ||||||| ||||| ||||||||| |||| |||| |||||||||||| |||| ||| ||| |||||| ||||| |||    
T  26241717 ggttaagcaactaaaacaagtaactttttaataaaaagtagtataattattatttgatcaaatgtaacatattacgtttccaaaacaaaacttctacttt 26241618  T
Q  153 tgaattctttaaccatt 169  Q
    || |||  |||||||||    
T  26241617 tggatttcttaaccatt 26241601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 65 - 192
Target Start/End: Complemental strand, 25530645 - 25530518
Alignment:
Q  65 aaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaattttgaattctttaa 164  Q
    ||||||| |||||||||| |||||||| || |||||||||||| | |||||||||||| ||| ||||  |||| |||||||||| ||   ||||||||||    
T  25530645 aaaacaaataagtttttatgaaaaaattgtgtaatcattactttatcaaatgtaacattttatatttctaagataaaatttctatttaaaaattctttaa 25530546  T
Q  165 ccattacctttatgacactggttagcaa 192  Q
    |||||||| | | ||  |||||||||||    
T  25530545 ccattaccatgaggatgctggttagcaa 25530518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 8896699 - 8896618
Alignment:
Q  64 taaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaattt 145  Q
    ||||||||||||||||| | |||||||| || |||||||||| ||| |||| ||||||||||| ||||| ||||||||||||    
T  8896699 taaaacaagtaagttttcatgaaaaaattgtgtaatcattacctgatcaaaagtaacatcttatatttttaagacaaaattt 8896618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 145
Target Start/End: Original strand, 8746132 - 8746229
Alignment:
Q  49 cattggttaagcaattaaaac-aagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaattt 145  Q
    |||||||||||||| |||||  ||||||||||||| |||||| | |||||||||||| |||| |||| |||||||  || |||| |||||||||||||    
T  8746132 cattggttaagcaaataaaaataagtaagtttttatgaaaaagttgtataatcattatttgatcaaaagtaacattctatatttacaagacaaaattt 8746229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 148
Target Start/End: Complemental strand, 18221103 - 18221003
Alignment:
Q  49 cattggttaagcaattaaaacaagtaagtttttaa-gaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttct 147  Q
    ||||||||||||| |||||| ||| |||||||| | |||||| | ||||||| ||||||| | |||||||||||||||| |||| |||| ||||| ||||    
T  18221103 cattggttaagcatttaaaataagcaagttttttatgaaaaagttgtataattattacttaatcaaatgtaacatcttatatttccaagtcaaaacttct 18221004  T
Q  148 a 148  Q
    |    
T  18221003 a 18221003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 169
Target Start/End: Complemental strand, 22931974 - 22931854
Alignment:
Q  49 cattggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    |||||||||| |||  |||| |||||| |||| || ||||| |||| |||| |||| ||| |||| ||||||| |||||||||   ||||||||||||||    
T  22931974 cattggttaaacaaccaaaataagtaaattttcaataaaaagtagtgtaattattaattgggcaattgtaacaacttacatttctgagacaaaatttcta 22931875  T
Q  149 attttgaattctttaaccatt 169  Q
     || ||||||| |||||||||    
T  22931874 cttatgaattccttaaccatt 22931854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 194
Target Start/End: Original strand, 33194720 - 33194864
Alignment:
Q  50 attggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaa 149  Q
    ||||||||||||| ||||| |||||| ||||||| ||||| |||| |||||||||||| | ||||||| | |  ||| ||||| ||||||||| || ||     
T  33194720 attggttaagcaactaaaataagtaaatttttaataaaaagtagtgtaatcattacttaatcaaatgtgatagtttatatttttaagacaaaacttttat 33194819  T
Q  150 ttttgaattctttaaccattacctttatgacactggttagcaaca 194  Q
    || || |||||||||| | |||  ||| || |||| |||||||||    
T  33194820 ttatggattctttaactaatactcttaggatactgattagcaaca 33194864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 19677039 - 19677091
Alignment:
Q  96 taatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    |||||||||||| | |||| ||||||||||| |||||||||||||||||||||    
T  19677039 taatcattacttaatcaaaagtaacatcttatattttcaagacaaaatttcta 19677091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 65 - 145
Target Start/End: Original strand, 43118819 - 43118899
Alignment:
Q  65 aaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaattt 145  Q
    |||||||||||||||| | |||||||| |  |||| | || |||| |||||||||||||| | ||||||||||||||||||    
T  43118819 aaaacaagtaagttttaatgaaaaaattgcgtaattactatttgatcaaatgtaacatctcatattttcaagacaaaattt 43118899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 169
Target Start/End: Complemental strand, 31850862 - 31850744
Alignment:
Q  52 tggttaagcaattaaaacaagtaagtttttaa-gaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaat 150  Q
    ||||||||||  |||||||||||||||||| | ||||||||  | ||||||||| || |  ||| ||||||||||| ||||  |||||||||||| || |    
T  31850862 tggttaagcatctaaaacaagtaagttttttatgaaaaaattatgtaatcattattttattaaaagtaacatcttatatttctaagacaaaatttttatt 31850763  T
Q  151 tttgaattctttaaccatt 169  Q
    | || ||| ||||||||||    
T  31850762 tatggattttttaaccatt 31850744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 42061223 - 42061268
Alignment:
Q  49 cattggttaagcaattaaaacaagtaagtttttaagaaaaaatagt 94  Q
    |||||||||||||| |||||||||||||||||||| |||| |||||    
T  42061223 cattggttaagcaactaaaacaagtaagtttttaataaaagatagt 42061268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 31487802 - 31487727
Alignment:
Q  73 taagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    ||||||||||||||||||| || |||| ||||||| |  |||  |||||||||| |||| ||||| ||||||||||    
T  31487802 taagtttttaagaaaaaattgtgtaattattacttaataaaaaataacatcttatatttccaagataaaatttcta 31487727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 148
Target Start/End: Complemental strand, 47445472 - 47445373
Alignment:
Q  49 cattggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    |||||||||||| |  | |||| |||||||||||  |||||||||| |||| ||||||| | |||| |||| | |||| ||||||||  |||||||||||    
T  47445472 cattggttaagcgaccagaacatgtaagtttttataaaaaaatagtttaattattacttcatcaaaagtaaaaacttatattttcaaagcaaaatttcta 47445373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 30270565 - 30270519
Alignment:
Q  94 tataatcattacttgagcaaatgtaacatcttacattttcaagacaa 140  Q
    |||||||||||||||  ||| |||||||||||||||||| |||||||    
T  30270565 tataatcattacttggtcaagtgtaacatcttacatttttaagacaa 30270519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 145
Target Start/End: Complemental strand, 34993238 - 34993148
Alignment:
Q  55 ttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaattt 145  Q
    |||||||  |||| |||||||||||| | |||||| | || |||| |||| || | |||| ||||||||||| ||||| ||||||||||||    
T  34993238 ttaagcatctaaatcaagtaagttttcatgaaaaagttgtgtaattattattttatcaaaagtaacatcttatatttttaagacaaaattt 34993148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 148
Target Start/End: Complemental strand, 23142753 - 23142670
Alignment:
Q  65 aaaacaagtaagtttttaagaaaaaa-tagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    |||| ||||||||||||| ||||||| | || |||| ||||||||| ||||  |||||||||| |||| ||| ||||||||||||    
T  23142753 aaaataagtaagtttttatgaaaaaagttgtgtaataattacttgatcaaaaataacatcttatatttccaa-acaaaatttcta 23142670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 169
Target Start/End: Original strand, 37928313 - 37928417
Alignment:
Q  65 aaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaattttgaattctttaa 164  Q
    |||| |||||||||||||  ||||| | || |||| ||||||| | ||||  |||||| ||| |||||||||| ||||||| || || |  |||||||||    
T  37928313 aaaataagtaagtttttataaaaaagttgtgtaataattactttatcaaaaataacattttatattttcaagataaaatttatatttatagattctttaa 37928412  T
Q  165 ccatt 169  Q
    |||||    
T  37928413 ccatt 37928417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 63 - 169
Target Start/End: Original strand, 11815922 - 11816028
Alignment:
Q  63 ttaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaattttgaattcttt 162  Q
    |||||||||||||||||||| ||||||   || |||||||||||| | |||| ||||||||||| ||||||||||||||||||||| ||||  |||| ||    
T  11815922 ttaaaacaagtaagtttttatgaaaaatatgtgtaatcattactttatcaaaagtaacatcttatattttcaagacaaaatttctatttttagattcatt 11816021  T
Q  163 aaccatt 169  Q
    |||||||    
T  11816022 aaccatt 11816028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 52 - 167
Target Start/End: Complemental strand, 30293936 - 30293821
Alignment:
Q  52 tggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaatt 151  Q
    ||||||| || | |||||||  ||||||| | ||||||||  | |||||||||||||| |||| ||||||||||| ||||| ||||||||||||||| ||    
T  30293936 tggttaaccattcaaaacaaacaagttttcatgaaaaaattatgtaatcattacttgatcaaaagtaacatcttatatttttaagacaaaatttctattt 30293837  T
Q  152 ttgaattctttaacca 167  Q
     |  ||||||||||||    
T  30293836 gtagattctttaacca 30293821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 147
Target Start/End: Complemental strand, 30840697 - 30840616
Alignment:
Q  65 aaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttct 147  Q
    |||||||||||||||| || ||||| | || |||||||||||||| |||| ||||||||||| |||||||||||||| |||||    
T  30840697 aaaacaagtaagttttcaa-aaaaagttgtgtaatcattacttgatcaaaagtaacatcttatattttcaagacaaattttct 30840616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 91 - 183
Target Start/End: Original strand, 43111767 - 43111859
Alignment:
Q  91 tagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaattttgaattctttaaccattacctttatgacact 183  Q
    ||||||||| ||||||||  ||||||||| ||||||||||| || || |||| || || ||||||||||||||| |||| || ||| ||||||    
T  43111767 tagtataattattacttggtcaaatgtaatatcttacatttccaggataaaacttttacttttgaattctttaatcattgcccttaggacact 43111859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 148
Target Start/End: Complemental strand, 1447670 - 1447571
Alignment:
Q  49 cattggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    ||||||||||||||  |||| ||||||||||||||  |||| |||| |||| ||||||||  ||| ||||||| |||| |||| ||| | ||||||||||    
T  1447670 cattggttaagcaacaaaaataagtaagtttttaatgaaaagtagtgtaattattacttggtcaactgtaacagcttatatttccaaaataaaatttcta 1447571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 20429817 - 20429854
Alignment:
Q  155 aattctttaaccattacctttatgacactggttagcaa 192  Q
    |||||||||||||||||||||| |||||||||||||||    
T  20429817 aattctttaaccattacctttaggacactggttagcaa 20429854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 169
Target Start/End: Original strand, 22293982 - 22294101
Alignment:
Q  50 attggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaa 149  Q
    ||||||||| || | |||||||||||||||||| |||||| | ||  ||| |||| |||| ||||   || |||||| |||| ||||||||||||||||     
T  22293982 attggttaaacattcaaaacaagtaagtttttatgaaaaagttgtgcaataattatttgatcaaaaccaatatcttatatttccaagacaaaatttctat 22294081  T
Q  150 ttttgaattctttaaccatt 169  Q
    || |  |||| |||||||||    
T  22294082 ttgtagattccttaaccatt 22294101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 148
Target Start/End: Original strand, 27544602 - 27544685
Alignment:
Q  65 aaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    ||||||||||| |||| | |||||| | || |||||||||| |||  |||  |||||||||| |||||||||| ||||||||||    
T  27544602 aaaacaagtaaattttcatgaaaaagttgtgtaatcattacatgataaaaaataacatcttatattttcaagataaaatttcta 27544685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 170
Target Start/End: Original strand, 36482099 - 36482169
Alignment:
Q  100 cattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaattttgaattctttaaccatta 170  Q
    ||||| |||| |||| ||||||||||| |||||||| |||||||||||| || |  |||| ||||||||||    
T  36482099 cattatttgatcaaaagtaacatcttatattttcaaaacaaaatttctatttgtagattcattaaccatta 36482169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 168
Target Start/End: Complemental strand, 8151857 - 8151792
Alignment:
Q  103 tacttgagcaaatgtaacatcttacattttcaagacaaaatttctaattttgaattctttaaccat 168  Q
    |||||||  ||| ||||||||||| |||||||| |||||||||||| || | ||||| ||||||||    
T  8151857 tacttgattaaaagtaacatcttatattttcaaaacaaaatttctacttataaattccttaaccat 8151792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 18242483 - 18242535
Alignment:
Q  96 taatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    ||||||||||| || |||| ||  ||||||| |||||||||||||||||||||    
T  18242483 taatcattactagatcaaaagtcgcatcttatattttcaagacaaaatttcta 18242535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 50 - 170
Target Start/End: Complemental strand, 15481 - 15361
Alignment:
Q  50 attggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaa 149  Q
    ||||||||| || | |||| ||||||||||||| ||||||   |||||||| |||||||  |||| ||||||||||| ||||||||||||||| |||||     
T  15481 attggttaaacattcaaaataagtaagtttttatgaaaaatgtgtataatcgttacttggtcaaaagtaacatcttatattttcaagacaaaaattctat 15382  T
Q  150 ttttgaattctttaaccatta 170  Q
    || | ||||| |||| |||||    
T  15381 ttataaattccttaatcatta 15361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 50 - 190
Target Start/End: Complemental strand, 52370480 - 52370340
Alignment:
Q  50 attggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaa 149  Q
    ||||||||||||||||||| || ||||||||||| ||| | |||| |||| ||||||||  ||| ||||||| ||||||||| ||| ||||||||| ||     
T  52370480 attggttaagcaattaaaataaataagtttttaataaatagtagtgtaattattacttggtcaattgtaacagcttacatttccaaaacaaaatttttat 52370381  T
Q  150 ttttgaattctttaaccattacctttatgacactggttagc 190  Q
    || || ||| | |||||||| | ||||  | ||||||||||    
T  52370380 ttatggattttctaaccattgcttttaaaatactggttagc 52370340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 50 - 133
Target Start/End: Original strand, 19480535 - 19480618
Alignment:
Q  50 attggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttc 133  Q
    |||| ||||| | |||||||||||||||||||| |||||| | || |||||||||||| | |||| ||||||||||| ||||||    
T  19480535 attgattaagaatttaaaacaagtaagtttttatgaaaaagttgtgtaatcattactttatcaaaagtaacatcttatattttc 19480618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 50 - 148
Target Start/End: Original strand, 27133547 - 27133645
Alignment:
Q  50 attggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    ||||||||||||  ||||| | ||||||||||| |||||| | ||||||||||||||||| ||||  ||| |||||| ||||  |||||||| ||||||    
T  27133547 attggttaagcatctaaaataggtaagtttttatgaaaaagttgtataatcattacttgaacaaaaataatatcttatatttcaaagacaaactttcta 27133645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 142
Target Start/End: Complemental strand, 2824932 - 2824839
Alignment:
Q  49 cattggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaa 142  Q
    ||||| |||||||  ||||||||| ||||||||| |||||  | || |||||||||||||| |||| ||||||||||| |||  ||||||||||    
T  2824932 cattgattaagcatctaaaacaagcaagtttttatgaaaatgttgtgtaatcattacttgatcaaaagtaacatcttatattcccaagacaaaa 2824839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 174
Target Start/End: Complemental strand, 12076543 - 12076419
Alignment:
Q  50 attggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaa 149  Q
    ||||||||| ||  ||||||||||||||| | |  ||||||| || | |||||| ||||| ||||  |||||||||| |||||||||||||||||| ||     
T  12076543 attggttaaacatctaaaacaagtaagttctcatcaaaaaattgtgtgatcattgcttgatcaaaattaacatcttatattttcaagacaaaatttttat 12076444  T
Q  150 ttttgaattctttaaccattacctt 174  Q
    ||    |||| ||||||||||||||    
T  12076443 ttgaagattccttaaccattacctt 12076419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 65 - 148
Target Start/End: Original strand, 12094971 - 12095054
Alignment:
Q  65 aaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    |||| ||||||||||||| |||||| | || |||||||||||| | |||| |||| |||||| ||||||||  |||||||||||    
T  12094971 aaaataagtaagtttttatgaaaaagttgtgtaatcattactttatcaaaagtaatatcttatattttcaatgcaaaatttcta 12095054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 5324623 - 5324660
Alignment:
Q  155 aattctttaaccattacctttatgacactggttagcaa 192  Q
    |||||||||||||||||||||| |||||||||||||||    
T  5324623 aattctttaaccattacctttaggacactggttagcaa 5324660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 18827621 - 18827680
Alignment:
Q  49 cattggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttga 109  Q
    ||||| |||||||||||||| ||||||||||||||  ||||||||| || |||||||||||    
T  18827621 cattgattaagcaattaaaa-aagtaagtttttaattaaaaatagtgtagtcattacttga 18827680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 145
Target Start/End: Original strand, 22019616 - 22019696
Alignment:
Q  65 aaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaattt 145  Q
    |||||||||||||||| |||||||| | || |||||||||||| |   ||  |||||||||| ||||| ||||||||||||    
T  22019616 aaaacaagtaagttttcaagaaaaagttgtgtaatcattacttaatagaaaataacatcttatattttaaagacaaaattt 22019696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 36752762 - 36752686
Alignment:
Q  55 ttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattt 131  Q
    |||| ||| |||||||||||| ||||||| ||||||| || |||| ||||||||  |||||| |||| |||||||||    
T  36752762 ttaaacaactaaaacaagtaaatttttaataaaaaattgtgtaattattacttggtcaaatggaacagcttacattt 36752686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 145
Target Start/End: Complemental strand, 2565510 - 2565431
Alignment:
Q  66 aaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaattt 145  Q
    |||||||||||||||||   |||| | || |||||||||||||| |||| ||||||| |||  ||||||||| |||||||    
T  2565510 aaacaagtaagtttttatagaaaagttgtgtaatcattacttgatcaaaagtaacattttatgttttcaagataaaattt 2565431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 13967870 - 13967941
Alignment:
Q  77 tttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    |||||| |||||| | |||||||||||||||||  |||  |||||||||| |||  ||||||||||||||||    
T  13967870 tttttatgaaaaagttgtataatcattacttgataaaaaataacatcttatattaccaagacaaaatttcta 13967941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 27284117 - 27284168
Alignment:
Q  97 aatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    |||||||| |||| |||| ||||||||||| |||| ||||||||||||||||    
T  27284117 aatcattatttgatcaaaagtaacatcttatatttccaagacaaaatttcta 27284168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 48419075 - 48419169
Alignment:
Q  54 gttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    ||||||||  ||||||||||||||||| | |||||| | ||  ||||||||||| | |||| ||||  | |||||||| ||| ||||||||||||    
T  48419075 gttaagcatataaaacaagtaagttttcatgaaaaagttgtgcaatcattactttatcaaaagtaaagttttacatttccaaaacaaaatttcta 48419169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 139
Target Start/End: Complemental strand, 7437944 - 7437855
Alignment:
Q  50 attggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagaca 139  Q
    |||||||||||| | |||| ||  ||||||||| |||||| | || ||||||| |||||  |||| ||||||||||| |||| |||||||    
T  7437944 attggttaagcattcaaaataaacaagtttttacgaaaaagttgtgtaatcatgacttgttcaaaagtaacatcttatatttccaagaca 7437855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 174
Target Start/End: Original strand, 20775069 - 20775194
Alignment:
Q  49 cattggttaagcaattaaaacaagtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    |||||||||||||   |||||||||||||||||| |||||| |  | |||| |||| |||| ||||  ||| |||||| ||||  |||||||| ||| ||    
T  20775069 cattggttaagcatccaaaacaagtaagtttttatgaaaaagttatgtaataattatttgatcaaaaataatatcttatatttctaagacaaatttttta 20775168  T
Q  149 attttgaattctttaaccattacctt 174  Q
     || |  |||| ||||||||||||||    
T  20775169 tttatagattcattaaccattacctt 20775194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 31089878 - 31089802
Alignment:
Q  71 agtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttcta 148  Q
    |||||||||||| |||||| | || |||||||||||| | |||| ||||||| ||| |||| | ||||||||||||||    
T  31089878 agtaagtttttatgaaaaagttgtgtaatcattactttatcaaaagtaacat-ttatatttcctagacaaaatttcta 31089802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 44190263 - 44190312
Alignment:
Q  96 taatcattacttgagcaaatgtaacatcttacattttcaagacaaaattt 145  Q
    |||| ||||||||| |||| ||||||||||| |||||||||| |||||||    
T  44190263 taattattacttgatcaaaagtaacatcttatattttcaagataaaattt 44190312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 191
Target Start/End: Original strand, 36551 - 36671
Alignment:
Q  71 agtaagtttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaattttgaattctttaaccatta 170  Q
    |||||| |||||| ||||| | |||||||||||| || | |||| ||||||||||| |||||||| ||||||||| || ||    ||||||||| |||||    
T  36551 agtaagcttttaaaaaaaagttgtataatcattatttaatcaaaagtaacatcttatattttcaaaacaaaatttttatttgaagattctttaatcatta 36650  T
Q  171 cctttatgacactggttagca 191  Q
    |||| | | ||| ||||||||    
T  36651 ccttaaaggcaccggttagca 36671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 3350 - 3418
Alignment:
Q  77 tttttaagaaaaaatagtataatcattacttgagcaaatgtaacatcttacattttcaagacaaaattt 145  Q
    |||||| |||||| | ||||||||| ||||| | |||| ||||||| ||| ||||||||||||||||||    
T  3350 tttttatgaaaaagttgtataatcaatactttatcaaaagtaacattttatattttcaagacaaaattt 3418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 120714 - 120786
Alignment:
Q  97 aatcattacttgagcaaatgtaacatcttacattttcaagacaaaatttctaattttgaattctttaaccatt 169  Q
    |||| |||||| | |||| || |||||||| ||||||||||||||||||||| || |  |||| |||||||||    
T  120714 aatcgttactttaccaaaagtgacatcttatattttcaagacaaaatttctatttgtagattccttaaccatt 120786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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