View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21125_low_2 (Length: 522)
Name: NF21125_low_2
Description: NF21125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21125_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 17 - 490
Target Start/End: Complemental strand, 27643532 - 27643059
Alignment:
| Q |
17 |
caaatacacttgggagcatttctgtgatatgacggatgcgggcatgcttgcaaaacaacatgtgtgggctgcagttacagaagatgtgaagaaccaagcg |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27643532 |
caaatacacttgggagcatttctgtgatatgacggatgcgggcgtgcttgcaaaacaacatgtgtgggctgcagttacagaagatgcgaagaaccaagct |
27643433 |
T |
|
| Q |
117 |
ttcaattgcacaaatggtgatgttttcacttggaagagtatgtggatgttgcttagtgaggtttttgatgttaagtttgtggagttgaatgacaaggaag |
216 |
Q |
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| T |
27643432 |
ttcaattgcacaaatggtgatgttttcacttggaagagtatgtggatgttgcttagtgaggtttttaatgttaagtttgtggagttgaatgacaaggaag |
27643333 |
T |
|
| Q |
217 |
agtttgatttggcggagttaatgcgtgataagggtgagatttgggacttgattgtggaggaatatgggcttcataagaccaaattggaggaaattgcttc |
316 |
Q |
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| T |
27643332 |
agtttgatttggtggagttaatgcgtgataagggtgagatttgggacctgattgtggaggaatatgggcttcataagaccaaattggaggaaattgcttc |
27643233 |
T |
|
| Q |
317 |
ctttgaagcaacactgccatttctgcggtttgagtttcaacatgtatctagtatgaacaagagtaagaactatgggttctttgagtatgcagatacgttt |
416 |
Q |
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| T |
27643232 |
ctttgaagcaacggtgccagttctgcggtttcagtttcaacatgtatctagtatgaacaaaagtaaggattatgggttctttgagtatgcagatacgttt |
27643133 |
T |
|
| Q |
417 |
aagagtatcagattctgggtggctaagctgagggagatgaaactcatatccttctaccaacgttgaattgcatt |
490 |
Q |
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| T |
27643132 |
aagagtatcagattctgggtggctaagttgagggagatgaaactcatacccgtctacaaacattgaattgcatt |
27643059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 20 - 477
Target Start/End: Original strand, 50247362 - 50247819
Alignment:
| Q |
20 |
atacacttgggagcatttctgtgatatgacggatgcgggcatgcttgcaaaacaacatgtgtgggctgcagttacagaagatgtgaagaaccaagcgttc |
119 |
Q |
| |
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|||||||||||||||||| ||||||||| | ||||| || |||| ||||| |||||||||||||||| ||||||| | | | ||||||||||| || |
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| T |
50247362 |
atacacttgggagcatttttgtgatatgtcagatgcaggtgtgctggcaaagcaacatgtgtgggctggagttacaaagaaagctaagaaccaagcattt |
50247461 |
T |
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| Q |
120 |
aattgcacaaatggtgatgttttcacttggaagagtatgtggatgttgcttagtgaggtttttgatgttaagtttgtggagttgaatgacaaggaagagt |
219 |
Q |
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| T |
50247462 |
aattgtacaaacggtgacattttcacttggaagagtatgtggatgttgcttagtgaggtttttgatgttgagtttgttgagttggatgataaagaagagt |
50247561 |
T |
|
| Q |
220 |
ttgatttggcggagttaatgcgtgataagggtgagatttgggacttgattgtggaggaatatgggcttcataagaccaaattggaggaaattgcttcctt |
319 |
Q |
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| T |
50247562 |
ttgatatcattgagttgatgcgtgacaagggtgaggtttgggacttgattgtagagaaatatgggcttcataagaccaagttgaaggaaattgcttgctt |
50247661 |
T |
|
| Q |
320 |
tgaagcaacactgccatttctgcggtttgagtttcaacatgtatctagtatgaacaagagtaagaactatgggttctttgagtatgcagatacgtttaag |
419 |
Q |
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| T |
50247662 |
tgaagccatggtgccagttgtacggtttgagtttcaacatgtatctagtatgaacaagagtaaagattatgggtttttagagtatgctgatacgtttaag |
50247761 |
T |
|
| Q |
420 |
agtatcagattctgggtggctaagctgagggagatgaaactcatatccttctaccaac |
477 |
Q |
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||||||| | ||||||||||||||||||||||||||||||| ||| ||| |||||||| |
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| T |
50247762 |
agtatcaaactctgggtggctaagctgagggagatgaaacttataccctcctaccaac |
50247819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 21 - 483
Target Start/End: Original strand, 50254500 - 50254962
Alignment:
| Q |
21 |
tacacttgggagcatttctgtgatatgacggatgcgggcatgcttgcaaaacaacatgtgtgggctgcagttacagaagatgtgaagaaccaagcgttca |
120 |
Q |
| |
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||||||||||||||||||||||||||||||||||| | |||| ||||| |||||||| ||||||||||||||| | | | |||||||||||||| | |
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| T |
50254500 |
tacacttgggagcatttctgtgatatgacggatgctcgtgtgctggcaaagcaacatgtatgggctgcagttacaaagaaggctaagaaccaagcgttta |
50254599 |
T |
|
| Q |
121 |
attgcacaaatggtgatgttttcacttggaagagtatgtggatgttgcttagtgaggtttttgatgttaagtttgtggagttgaatgacaaggaagagtt |
220 |
Q |
| |
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| T |
50254600 |
attgcacaaatggtgacgttttcgcatggaagagtatgtggaaggtgctttgtaagacttttgctgttaagtttgtggatttggatgaaaaggaagagtt |
50254699 |
T |
|
| Q |
221 |
tgatttggcggagttaatgcgtgataagggtgagatttgggacttgattgtggaggaatatgggcttcataagaccaaattggaggaaattgcttccttt |
320 |
Q |
| |
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|||||||| | |||| |||||||||||||||||| ||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
50254700 |
tgatttggtgcagtttatgcgtgataagggtgaggtttgggatcagattgtggaggagtatggacttcataagaccaaattggaggaaattgcttgtttt |
50254799 |
T |
|
| Q |
321 |
gaagcaacactgccatttctgcggtttgagtttcaacatgtatctagtatgaacaagagtaagaactatgggttctttgagtatgcagatacgtttaaga |
420 |
Q |
| |
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|| || ||||| || | || ||||||||||||| ||||||||||||||| |||||||| || |||| ||| ||||||||||| || |||||||| | |
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| T |
50254800 |
gatgccttggtgccagtttttcgatttgagtttcaacttgtatctagtatgaataagagtaaaaattatgagttttttgagtatgctgagacgtttaata |
50254899 |
T |
|
| Q |
421 |
gtatcagattctgggtggctaagctgagggagatgaaactcatatccttctaccaacgttgaa |
483 |
Q |
| |
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|| | | |||||||||| ||||||||||||||||| |||||| || ||||| ||| ||||| |
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| T |
50254900 |
gtgtgaaattctgggtgatgaagctgagggagatgaatctcatacccatctacgaacattgaa |
50254962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 427 - 512
Target Start/End: Complemental strand, 27646328 - 27646243
Alignment:
| Q |
427 |
gattctgggtggctaagctgagggagatgaaactcatatccttctaccaacgttgaattgcattatctgtaataatattcttcgac |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
27646328 |
gattctgggtggctaagctgagggagatgaaactcatacccttctaccaacattgaattgcattatctgtaataatattgttcgac |
27646243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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