View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21125_low_3 (Length: 478)

Name: NF21125_low_3
Description: NF21125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21125_low_3
NF21125_low_3
[»] chr6 (3 HSPs)
chr6 (7-257)||(5313098-5313348)
chr6 (291-462)||(5312893-5313064)
chr6 (308-389)||(16718962-16719043)
[»] chr3 (5 HSPs)
chr3 (7-257)||(54754421-54754671)
chr3 (291-462)||(54754216-54754387)
chr3 (343-462)||(29515812-29515928)
chr3 (309-428)||(53344910-53345029)
chr3 (309-384)||(31629341-31629416)
[»] scaffold0928 (2 HSPs)
scaffold0928 (7-222)||(3425-3640)
scaffold0928 (291-462)||(3161-3332)
[»] chr7 (2 HSPs)
chr7 (309-462)||(9147102-9147255)
chr7 (308-389)||(36611462-36611543)
[»] chr5 (3 HSPs)
chr5 (309-389)||(24565573-24565653)
chr5 (309-389)||(24606609-24606689)
chr5 (308-386)||(40372131-40372209)
[»] chr1 (2 HSPs)
chr1 (309-441)||(26240787-26240919)
chr1 (309-387)||(12449282-12449360)
[»] chr8 (2 HSPs)
chr8 (80-123)||(35899981-35900024)
chr8 (79-123)||(40776276-40776320)
[»] scaffold0559 (1 HSPs)
scaffold0559 (79-123)||(960-1004)
[»] chr4 (3 HSPs)
chr4 (323-407)||(18363603-18363687)
chr4 (79-123)||(33348239-33348283)
chr4 (323-407)||(36599241-36599325)


Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 7 - 257
Target Start/End: Complemental strand, 5313348 - 5313098
Alignment:
Q  7 atgtcattcacaaatttaacataatctattaatacaattgtaaacaagattaatgcaaaatacaataacggatatgtttgaaacatgtaaaatagtaaaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5313348 atgtcattcacaaatttaacataatctattaatacaattgtaaacaagattaatgcaaaatacaataacggatatgtttgaaacatgtaaaatagtaaaa 5313249  T
Q  107 atatagattaaattaaagtgttaacgaccnnnnnnntgataagatacaatgtagtcccttagaaaataaaaatattttttagtctctgaaaatggggtta 206  Q
    |||||||||||||||||||||||||||||       ||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  5313248 atatagattaaattaaagtgttaacgaccaaaaaaatgataagatccaatgtagtcccatagaaaataaaaatattttttagtccctgaaaatggggtta 5313149  T
Q  207 atttagtccaactcttgtttatactttatttggttgatgagtgaaagatag 257  Q
    |  ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5313148 acctagtccaactcttgtttatactttatttgcttgatgagtgaaagatag 5313098  T

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Target: chr6; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 291 - 462
Target Start/End: Complemental strand, 5313064 - 5312893
Alignment:
Q  291 ctgagattataatttagtggtggattttaagatgagggttcaactaggttcctcaccggtggaacatgaacaaaatacccttaaatttaattaacggttg 390  Q
    ||||||| || ||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5313064 ctgagatcatcatttagtagtggattttaagatgagggttcaactaggtccttcaccggtggaacatgaacaaaatacccttaaatttaattaacggttg 5312965  T
Q  391 atcttgattgaaaataataatgtaaacatgtatacattttcgcatacaatcctgcctctatctcatcccatg 462  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5312964 atcttgattgaaaataataatgtaaacatgtatacatttccgcatacaatcctgcctctatctcatcccatg 5312893  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 389
Target Start/End: Complemental strand, 16719043 - 16718962
Alignment:
Q  308 tggtggattttaagatgagggttcaactaggttcctcaccggtggaacatgaacaaaatacccttaaatttaattaacggtt 389  Q
    ||||||||| || | ||| || |||| || || ||||||||||||| ||||||||||||| | ||| |||||||||| ||||    
T  16719043 tggtggattctagggtgacggatcaattaagtccctcaccggtggaccatgaacaaaatatcgttagatttaattaaaggtt 16718962  T

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Target: chr3 (Bit Score: 206; Significance: 1e-112; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 7 - 257
Target Start/End: Complemental strand, 54754671 - 54754421
Alignment:
Q  7 atgtcattcacaaatttaacataatctattaatacaattgtaaacaagattaatgcaaaatacaataacggatatgtttgaaacatgtaaaatagtaaaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54754671 atgtcattcacaaatttaacataatctattaatacaattgtaaacaagattaatgcaaaatacaataacggatatgtttgaaacatgtaaaatagtaaaa 54754572  T
Q  107 atatagattaaattaaagtgttaacgaccnnnnnnntgataagatacaatgtagtcccttagaaaataaaaatattttttagtctctgaaaatggggtta 206  Q
    |||||||||||||||||||||||||||||       ||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  54754571 atatagattaaattaaagtgttaacgaccaaaaaaatgataagatccaatgtagtcccatagaaaataaaaatattttttagtccctgaaaatggggtta 54754472  T
Q  207 atttagtccaactcttgtttatactttatttggttgatgagtgaaagatag 257  Q
    |  ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  54754471 acctagtccaactcttgtttatactttatttgcttgatgagtgaaagatag 54754421  T

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Target: chr3; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 291 - 462
Target Start/End: Complemental strand, 54754387 - 54754216
Alignment:
Q  291 ctgagattataatttagtggtggattttaagatgagggttcaactaggttcctcaccggtggaacatgaacaaaatacccttaaatttaattaacggttg 390  Q
    ||||||| || ||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  54754387 ctgagatcatcatttagtagtggattttaagatgagggttcaactaggtccttcaccggtggaacatgaacaaaatacccttaaatttaattaacggttg 54754288  T
Q  391 atcttgattgaaaataataatgtaaacatgtatacattttcgcatacaatcctgcctctatctcatcccatg 462  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  54754287 atcttgattgaaaataataatgtaaacatgtatacatttccgcatacaatcctgcctctatctcatcccatg 54754216  T

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Target: chr3; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 343 - 462
Target Start/End: Original strand, 29515812 - 29515928
Alignment:
Q  343 tcaccggtggaacatgaacaaaatacccttaaatttaattaacggttgatcttgattgaaaataataatgtaaacatgtatacattttcgcatacaatcc 442  Q
    ||||||||||||||||||||||||||||||| |   ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29515812 tcaccggtggaacatgaacaaaatacccttaga---aattaacggttgatcttgattgaaaataataatgtaaacatgtatacatttccgcatacaatcc 29515908  T
Q  443 tgcctctatctcatcccatg 462  Q
    ||||||||||||||||||||    
T  29515909 tgcctctatctcatcccatg 29515928  T

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Target: chr3; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 309 - 428
Target Start/End: Original strand, 53344910 - 53345029
Alignment:
Q  309 ggtggattttaagatgagggttcaactaggttcctcaccggtggaacatgaacaaaatacccttaaatttaattaacggttgatcttgattgaaaataat 408  Q
    |||||||| |||||||||||||||||||| | ||||||| |||||||||||||| ||| |||||| || |||||||||||||||||||||||||||||||    
T  53344910 ggtggattctaagatgagggttcaactagatccctcaccagtggaacatgaacataatgcccttagatataattaacggttgatcttgattgaaaataat 53345009  T
Q  409 aatgtaaacatgtatacatt 428  Q
    ||||||||||||||||||||    
T  53345010 aatgtaaacatgtatacatt 53345029  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 384
Target Start/End: Original strand, 31629341 - 31629416
Alignment:
Q  309 ggtggattttaagatgagggttcaactaggttcctcaccggtggaacatgaacaaaatacccttaaatttaattaa 384  Q
    |||| |||||||| |||| |||||| || |||||||||| ||||| ||||||||||||||| || |||||||||||    
T  31629341 ggtgaattttaaggtgagtgttcaattaagttcctcaccagtggatcatgaacaaaataccattgaatttaattaa 31629416  T

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Target: scaffold0928 (Bit Score: 183; Significance: 8e-99; HSPs: 2)
Name: scaffold0928
Description:

Target: scaffold0928; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 3640 - 3425
Alignment:
Q  7 atgtcattcacaaatttaacataatctattaatacaattgtaaacaagattaatgcaaaatacaataacggatatgtttgaaacatgtaaaatagtaaaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3640 atgtcattcacaaatttaacataatctattaatacaattgtaaacaagattaatgcaaaatacaataacggatatgtttgaaacatgtaaaatagtaaaa 3541  T
Q  107 atatagattaaattaaagtgttaacgaccnnnnnnntgataagatacaatgtagtcccttagaaaataaaaatattttttagtctctgaaaatggggtta 206  Q
    |||||||||||||||||||||||||||||       ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3540 atatagattaaattaaagtgttaacgaccaaaaaaatgataagatccaatgtagtcccttagaaaataaaaatattttttagtccctgaaaatggggtta 3441  T
Q  207 atttagtccaactctt 222  Q
    | ||||||||||||||    
T  3440 acttagtccaactctt 3425  T

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Target: scaffold0928; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 291 - 462
Target Start/End: Complemental strand, 3332 - 3161
Alignment:
Q  291 ctgagattataatttagtggtggattttaagatgagggttcaactaggttcctcaccggtggaacatgaacaaaatacccttaaatttaattaacggttg 390  Q
    ||||||| || ||||||||| |||||||||||||| ||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  3332 ctgagatcatcatttagtgggggattttaagatgatggttcaactaggtccctcatcggtggaacatgagcaaaatacccttaaatttaattaacggttg 3233  T
Q  391 atcttgattgaaaataataatgtaaacatgtatacattttcgcatacaatcctgcctctatctcatcccatg 462  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3232 atcttgattgaaaataataatgtaaacatgtatacatttccgcatacaatcctgcctctatctcatcccatg 3161  T

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Target: chr7 (Bit Score: 130; Significance: 4e-67; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 309 - 462
Target Start/End: Original strand, 9147102 - 9147255
Alignment:
Q  309 ggtggattttaagatgagggttcaactaggttcctcaccggtggaacatgaacaaaatacccttaaatttaattaacggttgatcttgattgaaaataat 408  Q
    |||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  9147102 ggtggattctaagatgagggttcaactaggtccctcactggtggaacatgaacaaaatacccttagatttaattaacggttgatcttgattaaaaataat 9147201  T
Q  409 aatgtaaacatgtatacattttcgcatacaatcctgcctctatctcatcccatg 462  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  9147202 aatgtaaacatgtatacatttccgcatacaatcctgcctctatctcatcccatg 9147255  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 308 - 389
Target Start/End: Complemental strand, 36611543 - 36611462
Alignment:
Q  308 tggtggattttaagatgagggttcaactaggttcctcaccggtggaacatgaacaaaatacccttaaatttaattaacggtt 389  Q
    ||||||||| || | ||||||||||| ||  |  |||||||||||| ||||||||||||||| ||| |||||||||| ||||    
T  36611543 tggtggattctagggtgagggttcaattaaatctctcaccggtggaccatgaacaaaataccattagatttaattaatggtt 36611462  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 389
Target Start/End: Original strand, 24565573 - 24565653
Alignment:
Q  309 ggtggattttaagatgagggttcaactaggttcctcaccggtggaacatgaacaaaatacccttaaatttaattaacggtt 389  Q
    |||||||| || | ||||||||||| ||  | ||||||||||||| ||||||||||||||| ||| |||||||||| ||||    
T  24565573 ggtggattctagggtgagggttcaattaaatccctcaccggtggaccatgaacaaaataccattagatttaattaatggtt 24565653  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 389
Target Start/End: Original strand, 24606609 - 24606689
Alignment:
Q  309 ggtggattttaagatgagggttcaactaggttcctcaccggtggaacatgaacaaaatacccttaaatttaattaacggtt 389  Q
    |||||||| || | ||||||||||| ||  | ||||||||||||| ||||||||||||||| ||| |||||||||| ||||    
T  24606609 ggtggattctagggtgagggttcaattaaatccctcaccggtggaccatgaacaaaataccattagatttaattaatggtt 24606689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 308 - 386
Target Start/End: Complemental strand, 40372209 - 40372131
Alignment:
Q  308 tggtggattttaagatgagggttcaactaggttcctcaccggtggaacatgaacaaaatacccttaaatttaattaacg 386  Q
    ||||||||| || | ||||||||||| || ||||||||||||||||  ||||| |||||| | ||| ||||||||||||    
T  40372209 tggtggattctagggtgagggttcaattaagttcctcaccggtggactatgaataaaataacgttagatttaattaacg 40372131  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 441
Target Start/End: Complemental strand, 26240919 - 26240787
Alignment:
Q  309 ggtggattttaagatgagggttcaactaggttcctcaccggtggaacatgaacaaaatacccttaaatttaattaacggttgatcttgattgaaaataat 408  Q
    |||||||| || | ||||||||||| || || ||||||||||||| |||||| |||||||| ||  ||| ||| || ||||||  || ||||||||||||    
T  26240919 ggtggattctagggtgagggttcaattaagtccctcaccggtggaccatgaagaaaataccgtttgattgaatcaatggttgagatttattgaaaataat 26240820  T
Q  409 aatgtaaacatgtatacattttcgcatacaatc 441  Q
    | ||  ||||| || |||||||  |||||||||    
T  26240819 attgagaacatctagacattttaacatacaatc 26240787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 387
Target Start/End: Complemental strand, 12449360 - 12449282
Alignment:
Q  309 ggtggattttaagatgagggttcaactaggttcctcaccggtggaacatgaacaaaatacccttaaatttaattaacgg 387  Q
    ||||||||||| | |||||| |||| || || ||||||||||||| ||  ||||||||||| ||||||||||| |||||    
T  12449360 ggtggattttagggtgagggatcaattaagtccctcaccggtggaccacaaacaaaataccattaaatttaatgaacgg 12449282  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 123
Target Start/End: Complemental strand, 35900024 - 35899981
Alignment:
Q  80 atgtttgaaacatgtaaaatagtaaaaatatagattaaattaaa 123  Q
    |||||||||||||| | |||||||||||||||||||||||||||    
T  35900024 atgtttgaaacatgcataatagtaaaaatatagattaaattaaa 35899981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 40776320 - 40776276
Alignment:
Q  79 tatgtttgaaacatgtaaaatagtaaaaatatagattaaattaaa 123  Q
    |||||||||||||||| ||||| ||||||||||||| ||||||||    
T  40776320 tatgtttgaaacatgtgaaataataaaaatatagatcaaattaaa 40776276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0559 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0559
Description:

Target: scaffold0559; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 960 - 1004
Alignment:
Q  79 tatgtttgaaacatgtaaaatagtaaaaatatagattaaattaaa 123  Q
    |||||||||||||||| ||||| ||||||||||||| ||||||||    
T  960 tatgtttgaaacatgtgaaataataaaaatatagatcaaattaaa 1004  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 407
Target Start/End: Complemental strand, 18363687 - 18363603
Alignment:
Q  323 tgagggttcaactaggttcctcaccggtggaacatgaacaaaatacccttaaatttaattaacggttgatcttgattgaaaataa 407  Q
    ||||||||||| || |||||||||||||||| || ||| |||||||| ||  ||| ||| || ||||||  || |||||||||||    
T  18363687 tgagggttcaattaagttcctcaccggtggaccacgaagaaaataccattcgattgaatcaatggttgagatttattgaaaataa 18363603  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 33348283 - 33348239
Alignment:
Q  79 tatgtttgaaacatgtaaaatagtaaaaatatagattaaattaaa 123  Q
    |||||||||||||| | |||||||||||  |||||||||||||||    
T  33348283 tatgtttgaaacatatgaaatagtaaaagaatagattaaattaaa 33348239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 407
Target Start/End: Original strand, 36599241 - 36599325
Alignment:
Q  323 tgagggttcaactaggttcctcaccggtggaacatgaacaaaatacccttaaatttaattaacggttgatcttgattgaaaataa 407  Q
    ||||||||||| || |||||||||||||||| || ||| |||||||| ||  ||| ||| || ||||||  || |||||||||||    
T  36599241 tgagggttcaattaagttcctcaccggtggaccacgaagaaaataccattcgattgaatcaatggttgagatttattgaaaataa 36599325  T

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