View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21125_low_4 (Length: 427)

Name: NF21125_low_4
Description: NF21125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21125_low_4
NF21125_low_4
[»] chr4 (1 HSPs)
chr4 (16-99)||(49271387-49271470)
[»] chr3 (1 HSPs)
chr3 (238-301)||(3470457-3470520)
[»] chr6 (1 HSPs)
chr6 (243-301)||(17366304-17366362)
[»] chr5 (1 HSPs)
chr5 (237-301)||(31152538-31152602)
[»] chr8 (1 HSPs)
chr8 (237-301)||(8760543-8760607)


Alignment Details
Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 49271387 - 49271470
Alignment:
Q  16 aatatatagcaatagtatatacaattgaatttgaggaggtgaaaaggnnnnnnnttgaatgactcaattaaacctccattcacc 99  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  49271387 aatatatagcaatagtataaacaattgaatttgaggaggtgaaaaggaaaaaaattgaatgactcaattaaacctccattcacc 49271470  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 238 - 301
Target Start/End: Original strand, 3470457 - 3470520
Alignment:
Q  238 tatatttatatttttaaaaatgaaatgtttgcctaaactacttcaaaatcctgggtccgtccct 301  Q
    ||||||||| ||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  3470457 tatatttatgtttttcaaaatgaaatgtttgcctacactacttaaaaatcctgggtccgtccct 3470520  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 243 - 301
Target Start/End: Original strand, 17366304 - 17366362
Alignment:
Q  243 ttatatttttaaaaatgaaatgtttgcctaaactacttcaaaatcctgggtccgtccct 301  Q
    |||| ||||||||||||||||||||| ||| ||||||| |||||||||| |||||||||    
T  17366304 ttatgtttttaaaaatgaaatgtttgtctacactacttaaaaatcctggatccgtccct 17366362  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 301
Target Start/End: Original strand, 31152538 - 31152602
Alignment:
Q  237 gtatatttatatttttaaaaatgaaatgtttgcctaaactacttcaaaatcctgggtccgtccct 301  Q
    |||||||||| ||||||| ||||||||||||||||| ||| ||| |||||  |||||||||||||    
T  31152538 gtatatttatgtttttaagaatgaaatgtttgcctacactgcttaaaaattttgggtccgtccct 31152602  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 301
Target Start/End: Original strand, 8760543 - 8760607
Alignment:
Q  237 gtatatttatatttttaaaaatgaaatgtttgcctaaactacttcaaaatcctgggtccgtccct 301  Q
    |||||||||| ||||||| ||||||||||||||||| |||  || |||||| ||| ||| |||||    
T  8760543 gtatatttatgtttttaagaatgaaatgtttgcctacactgtttaaaaatcatggatccatccct 8760607  T

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