View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21125_low_5 (Length: 353)
Name: NF21125_low_5
Description: NF21125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21125_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 44260505 - 44260170
Alignment:
| Q |
1 |
caccaagatcagaaaaatcaatcttctcacatatatccaaggtgttattttcaatttgttgcatatttttcaacatgctgattttgtgattgcaagcttg |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44260505 |
caccaagatcagaaaaatcaatcatctcacatatatccaaggtgttagtttcaatttgttgcatatttttcaacatgctgattttgtgattgcaagcttg |
44260406 |
T |
|
| Q |
101 |
aatcttagcatttatagtagcaatgaagtctctgagttgattcccatccaagttactaaaatgtggatgccaagttggatagatgttactgatgatatct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44260405 |
aatcttagcatttatagtagcaatgaagtctctgagttgattcccatccaagttactaaaatgtggatgccaagttggatagatgttactgatgatatct |
44260306 |
T |
|
| Q |
201 |
ctgcgcactttgttaatctttgtttcaaccttttctttcttattttcaaagtagtccttgacatcaaatatcttaggagttttctcaatcttttgattct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
44260305 |
ctgcgcactttgttaatctttgtttcaaccttttctttcttattttcaaagtagtccttgacatcaaatatcttaggagttttctcaatcttttgatttt |
44260206 |
T |
|
| Q |
301 |
gatactcttgaagcaaggagtttacacttgtaaggt |
336 |
Q |
| |
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||||||||||||||||||||||||||||| |||||| |
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| T |
44260205 |
gatactcttgaagcaaggagtttacacttataaggt |
44260170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 64 - 326
Target Start/End: Complemental strand, 15978092 - 15977830
Alignment:
| Q |
64 |
tatttttcaacatgctgattttgtgattgcaagcttgaatcttagcatttatagtagcaatgaagtctctgagttgattcccatccaagttactaaaatg |
163 |
Q |
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||||||||||||||||||||||||||| |||||||| |||||| |||||| ||||||||||||||||||||||||||| | |||| ||| |||| |
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| T |
15978092 |
tatttttcaacatgctgattttgtgatcacaagcttggatcttatcatttacagtagcaatgaagtctctgagttgatttgcttccatgttttggaaatc |
15977993 |
T |
|
| Q |
164 |
tggatgccaagttggatagatgttactgatgatatctctgcgcactttgttaatctttgtttcaaccttttctttcttattttcaaagtagtccttgaca |
263 |
Q |
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| |||||||||||||||| | | ||| | ||||| | | ||||||| | ||||| | |||||| |||| |||| || ||||||||| | | |||| |
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| T |
15977992 |
ttgatgccaagttggatacttctccttgagggtatctttcctcactttggttatcttagcttcaacattttttttcctaaattcaaagtatttgtggaca |
15977893 |
T |
|
| Q |
264 |
tcaaatatcttaggagttttctcaatcttttgattctgatactcttgaagcaaggagtttaca |
326 |
Q |
| |
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|||||||| | ||||| || ||||||||| | || || ||| |||||||||| |||||||||| |
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| T |
15977892 |
tcaaatatttcaggagcttcctcaatcttcttatgctcatattcttgaagcatggagtttaca |
15977830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 67 - 325
Target Start/End: Complemental strand, 52000145 - 51999887
Alignment:
| Q |
67 |
ttttcaacatgctgattttgtgattgcaagcttgaatcttagcatttatagtagcaatgaagtctctgagttgattcccatccaagttactaaaatgtgg |
166 |
Q |
| |
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|||| |||||| | ||||||||||| |||||||||||||| |||| |||| |||| | |||||||||||||| | | |||| |||| |||| | | |
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| T |
52000145 |
ttttaaacatgttaattttgtgattacaagcttgaatcttggcatctataacagcacttaagtctctgagttggcttgcttccatgttaaccaaatcttg |
52000046 |
T |
|
| Q |
167 |
atgccaagttggatagatgttactgatgatatctctgcgcactttgttaatctttgtttcaaccttttctttcttattttcaaagtagtccttgacatca |
266 |
Q |
| |
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|||||| |||||||| || || |||||||||| || | ||||| |||||| | | |||||| |||||||| ||||||||||||| ||||||||| |
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| T |
52000045 |
atgccaggttggatatttgatatcgatgatatctttgtgtgctttgataatctcagccttaaccttagctttcttaatttcaaagtagtcgttgacatca |
51999946 |
T |
|
| Q |
267 |
aatatcttaggagttttctcaatcttttgattctgatactcttgaagcaaggagtttac |
325 |
Q |
| |
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|||||||| || || |||||||||||||||| | |||||||||||||| ||||||||| |
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| T |
51999945 |
aatatcttgggtgtattctcaatcttttgatgcacatactcttgaagcatggagtttac |
51999887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 55 - 296
Target Start/End: Complemental strand, 21868451 - 21868210
Alignment:
| Q |
55 |
tttgttgcatatttttcaacatgctgattttgtgattgcaagcttgaatcttagcatttatagtagcaatgaagtctctgagttgattcccatccaagtt |
154 |
Q |
| |
|
|||||||||| || || | |||||| ||||||||||| |||||||||||||| |||| || | || ||||||| | ||||||| | |||||||| ||| |
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| T |
21868451 |
tttgttgcattttctttagcatgctaattttgtgattacaagcttgaatcttggcatctagaataccaatgaaagttttgagttgttccccatccatgtt |
21868352 |
T |
|
| Q |
155 |
actaaaatgtggatgccaagttggatagatgttactgatgatatctctgcgcactttgttaatctttgtttcaaccttttctttcttattttcaaagtag |
254 |
Q |
| |
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| || ||| |||||||||||||| || || | | || ||| || |||||||| ||||| ||||||||| | ||||||||| |||| ||| |
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| T |
21868351 |
catgaagcatgggtgccaagttggatacattttcatcacaatctctttgtgcactttggaaatctcaccttcaaccttattcttcttatttgcaaaatag |
21868252 |
T |
|
| Q |
255 |
tccttgacatcaaatatcttaggagttttctcaatcttttga |
296 |
Q |
| |
|
||||| |||||||| ||||| |||||| |||||||||||||| |
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|
| T |
21868251 |
tccttcacatcaaagatcttcggagttgtctcaatcttttga |
21868210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 181
Target Start/End: Original strand, 21818989 - 21819110
Alignment:
| Q |
60 |
tgcatatttttcaacatgctgattttgtgattgcaagcttgaatcttagcatttatagtagcaatgaagtctctgagttgattcccatccaagttactaa |
159 |
Q |
| |
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|||||| |||||| |||||| ||| | |||| ||||||| |||||| ||||||| | ||||| ||||| || ||||||| | ||||||| |||| | | |
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| T |
21818989 |
tgcatagttttcagcatgctaattctttgatcacaagcttcaatcttggcatttacaatagcagtgaaggctttgagttgttcaccatccatgttaatga |
21819088 |
T |
|
| Q |
160 |
aatgtggatgccaagttggata |
181 |
Q |
| |
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|| ||||| |||||||||||| |
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| T |
21819089 |
aacatggatcccaagttggata |
21819110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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