View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21126_high_1 (Length: 569)

Name: NF21126_high_1
Description: NF21126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21126_high_1
NF21126_high_1
[»] chr3 (22 HSPs)
chr3 (2-546)||(50549932-50550484)
chr3 (400-495)||(47677281-47677376)
chr3 (400-498)||(30476500-30476598)
chr3 (397-480)||(33689208-33689291)
chr3 (400-485)||(30580782-30580867)
chr3 (400-485)||(51046099-51046184)
chr3 (400-494)||(1801472-1801566)
chr3 (400-474)||(47492073-47492147)
chr3 (397-485)||(49418714-49418802)
chr3 (412-495)||(29031752-29031835)
chr3 (402-485)||(30734430-30734513)
chr3 (412-485)||(55223259-55223332)
chr3 (397-485)||(43139732-43139820)
chr3 (402-463)||(30904293-30904354)
chr3 (397-485)||(18321678-18321766)
chr3 (412-484)||(50524730-50524802)
chr3 (435-504)||(39385749-39385818)
chr3 (450-514)||(29031712-29031776)
chr3 (450-513)||(18321727-18321790)
chr3 (402-433)||(50524730-50524761)
chr3 (450-506)||(43139715-43139771)
chr3 (397-433)||(47677334-47677370)
[»] chr6 (10 HSPs)
chr6 (400-495)||(10521875-10521970)
chr6 (400-495)||(24618627-24618722)
chr6 (400-509)||(12343103-12343212)
chr6 (397-495)||(2315327-2315425)
chr6 (397-485)||(551188-551276)
chr6 (428-499)||(31654318-31654389)
chr6 (402-485)||(17750929-17751012)
chr6 (419-486)||(24587487-24587554)
chr6 (400-480)||(13043489-13043569)
chr6 (450-491)||(2315325-2315366)
[»] chr5 (26 HSPs)
chr5 (397-485)||(3180083-3180171)
chr5 (400-509)||(3899842-3899951)
chr5 (397-485)||(16439165-16439253)
chr5 (400-509)||(16971147-16971256)
chr5 (397-485)||(19598359-19598446)
chr5 (400-495)||(28818934-28819029)
chr5 (400-485)||(29699394-29699479)
chr5 (400-485)||(30117854-30117939)
chr5 (400-485)||(291124-291209)
chr5 (400-485)||(19655185-19655270)
chr5 (400-464)||(2953238-2953302)
chr5 (400-495)||(2093963-2094058)
chr5 (401-485)||(16802471-16802555)
chr5 (413-495)||(26662416-26662498)
chr5 (413-495)||(26934011-26934093)
chr5 (406-495)||(38134405-38134494)
chr5 (412-485)||(12913830-12913903)
chr5 (450-495)||(16439214-16439259)
chr5 (451-499)||(16802521-16802569)
chr5 (413-485)||(2935869-2935941)
chr5 (455-485)||(32485630-32485660)
chr5 (423-485)||(39031200-39031262)
chr5 (450-495)||(3180077-3180122)
chr5 (391-468)||(43225363-43225440)
chr5 (400-459)||(2356327-2356383)
chr5 (449-485)||(17849220-17849256)
[»] chr1 (40 HSPs)
chr1 (397-495)||(34062226-34062324)
chr1 (400-514)||(8337877-8337991)
chr1 (401-486)||(17127591-17127676)
chr1 (400-485)||(48993943-48994028)
chr1 (397-509)||(46333969-46334081)
chr1 (400-506)||(47303401-47303507)
chr1 (400-485)||(741528-741613)
chr1 (397-485)||(37155073-37155161)
chr1 (400-495)||(29371385-29371480)
chr1 (400-485)||(29179623-29179708)
chr1 (400-485)||(32540774-32540859)
chr1 (397-485)||(4609023-4609111)
chr1 (400-492)||(15220831-15220923)
chr1 (400-484)||(33219601-33219685)
chr1 (400-474)||(5995407-5995481)
chr1 (403-485)||(45728314-45728396)
chr1 (397-482)||(9157340-9157425)
chr1 (400-485)||(48498442-48498527)
chr1 (400-491)||(48604973-48605064)
chr1 (388-485)||(44706797-44706895)
chr1 (412-485)||(1091582-1091655)
chr1 (397-458)||(1819512-1819573)
chr1 (450-506)||(1819495-1819551)
chr1 (397-495)||(38674528-38674624)
chr1 (400-514)||(49444939-49445051)
chr1 (436-485)||(21630069-21630118)
chr1 (450-514)||(4609072-4609136)
chr1 (441-485)||(28395664-28395708)
chr1 (400-464)||(28928805-28928869)
chr1 (452-495)||(9157388-9157431)
chr1 (423-481)||(36290456-36290514)
chr1 (450-495)||(2573172-2573217)
chr1 (387-428)||(36774823-36774864)
chr1 (451-514)||(32157602-32157665)
chr1 (435-485)||(5694950-5695000)
chr1 (450-515)||(5694887-5694951)
chr1 (450-499)||(8337865-8337913)
chr1 (397-469)||(19711203-19711273)
chr1 (397-433)||(8337930-8337966)
chr1 (450-486)||(17127590-17127626)
[»] chr4 (31 HSPs)
chr4 (400-509)||(42375013-42375122)
chr4 (397-517)||(47404608-47404728)
chr4 (401-495)||(55090023-55090117)
chr4 (400-485)||(51265472-51265557)
chr4 (400-512)||(40789179-40789291)
chr4 (400-485)||(23444295-23444380)
chr4 (400-485)||(47661869-47661954)
chr4 (397-495)||(52028566-52028664)
chr4 (400-485)||(6271729-6271814)
chr4 (400-509)||(53954613-53954722)
chr4 (397-464)||(50384128-50384195)
chr4 (397-509)||(31430484-31430593)
chr4 (395-484)||(26186037-26186124)
chr4 (400-485)||(35682193-35682278)
chr4 (400-485)||(47762635-47762720)
chr4 (397-464)||(28693946-28694013)
chr4 (391-485)||(31532706-31532800)
chr4 (412-464)||(45591448-45591500)
chr4 (397-464)||(24006093-24006160)
chr4 (402-465)||(25818401-25818464)
chr4 (423-485)||(30861823-30861885)
chr4 (388-429)||(17285813-17285854)
chr4 (450-495)||(55090013-55090058)
chr4 (388-427)||(6607500-6607539)
chr4 (450-495)||(47404602-47404647)
chr4 (454-495)||(55089894-55089935)
chr4 (388-428)||(9712956-9712996)
chr4 (450-485)||(42375086-42375121)
chr4 (400-463)||(44379979-44380042)
chr4 (453-495)||(31430478-31430520)
chr4 (450-495)||(50384122-50384167)
[»] chr2 (19 HSPs)
chr2 (401-485)||(6721978-6722062)
chr2 (400-495)||(38933604-38933699)
chr2 (397-495)||(2828601-2828699)
chr2 (401-485)||(37762028-37762112)
chr2 (400-509)||(6217250-6217359)
chr2 (400-495)||(14229379-14229473)
chr2 (397-495)||(2893980-2894078)
chr2 (401-495)||(37961723-37961817)
chr2 (400-485)||(16514451-16514536)
chr2 (400-474)||(14470618-14470692)
chr2 (401-474)||(15011318-15011391)
chr2 (400-495)||(29925596-29925691)
chr2 (400-485)||(29508716-29508802)
chr2 (450-513)||(15011356-15011419)
chr2 (400-445)||(32545855-32545900)
chr2 (400-474)||(14892299-14892372)
chr2 (450-495)||(14464572-14464617)
chr2 (450-494)||(37762019-37762063)
chr2 (445-495)||(2143943-2143993)
[»] chr8 (18 HSPs)
chr8 (400-486)||(10086783-10086869)
chr8 (397-499)||(34541826-34541928)
chr8 (400-485)||(5033188-5033273)
chr8 (400-485)||(8796449-8796534)
chr8 (400-485)||(35440995-35441080)
chr8 (412-506)||(6296611-6296705)
chr8 (400-485)||(33841617-33841702)
chr8 (400-485)||(5667124-5667209)
chr8 (400-497)||(39850970-39851067)
chr8 (401-485)||(8243415-8243499)
chr8 (400-485)||(45191153-45191238)
chr8 (400-475)||(34229678-34229753)
chr8 (401-484)||(4958627-4958709)
chr8 (400-516)||(31159855-31159963)
chr8 (439-485)||(43844534-43844580)
chr8 (450-495)||(8243405-8243450)
chr8 (450-495)||(34229717-34229762)
chr8 (400-449)||(35031640-35031689)
[»] chr7 (20 HSPs)
chr7 (400-485)||(11016896-11016981)
chr7 (400-485)||(15027569-15027654)
chr7 (397-485)||(27028816-27028904)
chr7 (397-485)||(41018251-41018339)
chr7 (400-495)||(42628312-42628407)
chr7 (400-482)||(38975835-38975917)
chr7 (400-509)||(29053340-29053449)
chr7 (400-474)||(48000775-48000849)
chr7 (400-485)||(4290572-4290657)
chr7 (400-485)||(34854721-34854806)
chr7 (397-485)||(7671934-7672022)
chr7 (400-495)||(4649337-4649434)
chr7 (397-485)||(45231877-45231961)
chr7 (400-489)||(10419481-10419570)
chr7 (435-474)||(22764761-22764800)
chr7 (456-518)||(30165329-30165391)
chr7 (424-474)||(30217504-30217554)
chr7 (400-449)||(48000720-48000769)
chr7 (445-485)||(27028755-27028795)
chr7 (450-506)||(41018234-41018290)
[»] scaffold0047 (2 HSPs)
scaffold0047 (397-509)||(63760-63872)
scaffold0047 (450-499)||(63833-63882)
[»] scaffold0016 (1 HSPs)
scaffold0016 (402-495)||(49731-49824)
[»] scaffold0586 (1 HSPs)
scaffold0586 (411-485)||(7084-7158)
[»] scaffold0481 (1 HSPs)
scaffold0481 (397-461)||(2910-2974)
[»] scaffold1033 (2 HSPs)
scaffold1033 (397-460)||(2265-2328)
scaffold1033 (450-483)||(2289-2322)
[»] scaffold1029 (2 HSPs)
scaffold1029 (397-460)||(2265-2328)
scaffold1029 (450-483)||(2289-2322)
[»] scaffold0161 (1 HSPs)
scaffold0161 (401-474)||(27247-27320)


Alignment Details
Target: chr3 (Bit Score: 446; Significance: 0; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 2 - 546
Target Start/End: Complemental strand, 50550484 - 50549932
Alignment:
Q  2 atttcattgatcacaagtatgcttgtagaaaagcaaaatgacaccttgatagttgagattacccaccacaaaacctgtttcggccatgaagcaaaggatc 101  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  50550484 atttcatcgatcacaagtatgcttgtagaaaagcaaaatgacaccttgatagttgagattacccaccacaaaacctgtttcggccgtgaagcaaaggatc 50550385  T
Q  102 tttgataatatcttgtacaagcagccaataataatcacaatatgaaatggcaagatagtactgagcttcaattcaactcgacgtcagcgtaaaaatcatt 201  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  50550384 tttgataatatcttttacaagcagccaataataatcacaatatgaaatggcaagatagtagtgagcttcaattcaactcgacgtcagcgtaaaaataatt 50550285  T
Q  202 tataatgaaattacgcacccacttaactgatatccaattgccccatcgattaatactacaacactactcaatctagatgttggtatagtttaatcaccac 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50550284 tataatgaaattacgcacccacttaactgatatccaattgccccatcgattaatactacaacactactcaatctagatgttggtatagtttaatcaccac 50550185  T
Q  302 taattcattttattttattaaaccaatgatgacaactttgtttctatttctacaattatcgattgcttattctagctatgaatttggggtagcacttggg 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||    
T  50550184 taattcattttattttattaaaccaatgatgacaactttgtttctatttctaaaattatcgattgcttattctagctatgaattt-gggtaccacttggg 50550086  T
Q  402 tgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatg---------tcactcaactc 492  Q
    ||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||         |||| || ||     
T  50550085 tgacattgatcaatcataatgtcataatgtttgtgaaagagagagaaacacaagcattgtaatattgtgattggtcaatgtcaccaatatcacccagctt 50549986  T
Q  493 tatatcattcaagtattatccgactatcaatatttaatatgtccagtggtgatg 546  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  50549985 tatatcactcaagtattatccgacaatcaatatttaatatgtccagtggtgatg 50549932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 400 - 495
Target Start/End: Original strand, 47677281 - 47677376
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    ||||||||||||| |||| |||||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  47677281 ggtgacattgaccgatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattgatcaatgtcacccaactctat 47677376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 400 - 498
Target Start/End: Original strand, 30476500 - 30476598
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctatatc 498  Q
    |||||||||| ||||||| |||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||||  |||||||||||    
T  30476500 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattgaccaatgtcacataactctatatc 30476598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 397 - 480
Target Start/End: Complemental strand, 33689291 - 33689208
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaat 480  Q
    ||||||||||||| ||||||| |||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| ||||    
T  33689291 ttgggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattgaccaat 33689208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 400 - 485
Target Start/End: Original strand, 30580782 - 30580867
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    ||||| |||||||||||||||||||||||| ||| ||||||||| ||||||||||||| ||||| ||||||||||| |||||||||    
T  30580782 ggtgatattgaccaatcataatgtcacaatatttgtgaaagagatagaaacacaagcactgtgacattgtgattgaccaatgtcac 30580867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 400 - 485
Target Start/End: Original strand, 51046099 - 51046184
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||  ||||||||||  |||||||||    
T  51046099 ggtgacattgatcaatcataatgtcacaatgtttgtgaaagagagagaaacacaagcattatggcattgtgattggccaatgtcac 51046184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 400 - 494
Target Start/End: Original strand, 1801472 - 1801566
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactcta 494  Q
    |||||||||| ||||||| |||| ||||||| || |||||||||||||||||||| |||||||  ||||||||||  ||||||||| ||||||||    
T  1801472 ggtgacattggccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacccaactcta 1801566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 400 - 474
Target Start/End: Original strand, 47492073 - 47492147
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattg 474  Q
    |||||||||| ||||||| |||||||||||| || ||||| ||||||||||||||||||||||| ||||||||||    
T  47492073 ggtgacattggccaatcacaatgtcacaatgcttgtgaaaaagagagaaacacaagcattgtgacattgtgattg 47492147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 397 - 485
Target Start/End: Original strand, 49418714 - 49418802
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||||| ||||  |||||| ||||||| ||| ||| ||||||||||||||||||||||||| ||||||| | ||||| |||||||||    
T  49418714 ttgggtgatattggtcaatcacaatgtcataatatttgtgaaagagagagaaacacaagcattatgatattataattgaccaatgtcac 49418802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 412 - 495
Target Start/End: Original strand, 29031752 - 29031835
Alignment:
Q  412 caatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    |||||| |||||||||||| || |||||||||||||||||||| |||||||| ||||| ||||| |||| ||||  ||||||||    
T  29031752 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtaattgaccaatatcacctaactctat 29031835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 402 - 485
Target Start/End: Original strand, 30734430 - 30734513
Alignment:
Q  402 tgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    ||||||||||| |||| |||||||||||| || ||||||| ||||||||||||| ||| ||| ||||||||||  |||||||||    
T  30734430 tgacattgaccgatcacaatgtcacaatgcttgtgaaagatagagaaacacaagtattatgacattgtgattggccaatgtcac 30734513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 412 - 485
Target Start/End: Complemental strand, 55223332 - 55223259
Alignment:
Q  412 caatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    ||||||||||||||||||| || ||||||||||||||||| ||| ||| | ||||||||||||| |||| ||||    
T  55223332 caatcataatgtcacaatgcttgtgaaagagagagaaacataagtattctaatattgtgattgaccaatatcac 55223259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 397 - 485
Target Start/End: Original strand, 43139732 - 43139820
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    ||||||||||| |  |||||| ||||||| |||| || ||||||||||||||||||||||||||||  ||||| ||||  |||||||||    
T  43139732 ttgggtgacatcggtcaatcacaatgtcagaatgcttgtgaaagagagagaaacacaagcattgtggcattgttattggccaatgtcac 43139820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 402 - 463
Target Start/End: Complemental strand, 30904354 - 30904293
Alignment:
Q  402 tgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtga 463  Q
    ||||||| | |||||| ||| ||||||| ||||| |||||||||||||||||||||||||||    
T  30904354 tgacattaatcaatcacaatatcacaatatttataaaagagagagaaacacaagcattgtga 30904293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 485
Target Start/End: Complemental strand, 18321766 - 18321678
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||| ||||||||  |||||| ||||||||||||  | ||||| ||||| |||||||| | |||||| ||||||||||| |||||||||    
T  18321766 ttggatgacattggtcaatcacaatgtcacaatgcatgtgaaaaagagaaaaacacaaactttgtgacattgtgattgaccaatgtcac 18321678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 412 - 484
Target Start/End: Complemental strand, 50524802 - 50524730
Alignment:
Q  412 caatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtca 484  Q
    |||||| ||||| || ||| || |||||||||||||||||||| |||||||| ||| |||||| |||||||||    
T  50524802 caatcacaatgttacgatgcttgtgaaagagagagaaacacaaacattgtgacattatgattggtcaatgtca 50524730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 435 - 504
Target Start/End: Original strand, 39385749 - 39385818
Alignment:
Q  435 tgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctatatcattcaa 504  Q
    ||||||||||||||| ||||  ||||| | ||||||||||  ||||||||| ||||||||| ||||||||    
T  39385749 tgaaagagagagaaatacaaatattgtaacattgtgattggccaatgtcacccaactctatgtcattcaa 39385818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 514
Target Start/End: Complemental strand, 29031776 - 29031712
Alignment:
Q  450 cacaagcattgtgatattgtgattgatcaatgtcactcaactctatatcattcaagtattatccg 514  Q
    |||||||||||||| ||||||||||| |||| ||||  |||||||| |||| ||||| |||||||    
T  29031776 cacaagcattgtgacattgtgattgaccaatatcacctaactctatgtcatgcaagtgttatccg 29031712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 513
Target Start/End: Original strand, 18321727 - 18321790
Alignment:
Q  450 cacaagcattgtgatattgtgattgatcaatgtcactcaactctatatcattcaagtattatcc 513  Q
    |||| ||||||||| ||||||||||| ||||||||  ||||||||| |||| ||||| ||||||    
T  18321727 cacatgcattgtgacattgtgattgaccaatgtcatccaactctatgtcatccaagtgttatcc 18321790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 433
Target Start/End: Original strand, 50524730 - 50524761
Alignment:
Q  402 tgacattgaccaatcataatgtcacaatgttt 433  Q
    ||||||||||||||||||||||||||||||||    
T  50524730 tgacattgaccaatcataatgtcacaatgttt 50524761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 506
Target Start/End: Complemental strand, 43139771 - 43139715
Alignment:
Q  450 cacaagcattgtgatattgtgattgatcaatgtcactcaactctatatcattcaagt 506  Q
    |||||||||| ||| ||||||||||| | ||||||| ||||||||| ||| ||||||    
T  43139771 cacaagcattctgacattgtgattgaccgatgtcacccaactctatgtcactcaagt 43139715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 397 - 433
Target Start/End: Complemental strand, 47677370 - 47677334
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgttt 433  Q
    |||||||||||||| |||||| |||||||||||||||    
T  47677370 ttgggtgacattgatcaatcacaatgtcacaatgttt 47677334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 2e-32; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 400 - 495
Target Start/End: Original strand, 10521875 - 10521970
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    |||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||    
T  10521875 ggtgacattggccaatcacaatgtcacaatgcttatgaaagagagagaaacacaagcattatgacattgtgattgaccaatgtcactcaactctat 10521970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 400 - 495
Target Start/End: Original strand, 24618627 - 24618722
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    ||||||||||| |||||| ||||||| |||| |||||||||||||||||||||||||||||||| |||||||||| |||| ||||| |||||||||    
T  24618627 ggtgacattgatcaatcacaatgtcataatgcttatgaaagagagagaaacacaagcattgtgacattgtgattggtcaacgtcacccaactctat 24618722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 509
Target Start/End: Complemental strand, 12343212 - 12343103
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctatatca 499  Q
    |||||||||| ||||||| |||||||||||| || ||||||||||||||||||||||||||||  |||||||||||  |||||||| ||||||||| |||    
T  12343212 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattgactaatgtcacccaactctatgtca 12343113  T
Q  500 ttcaagtatt 509  Q
      ||||||||    
T  12343112 cccaagtatt 12343103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 397 - 495
Target Start/End: Original strand, 2315327 - 2315425
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    |||||||||||||| |||||| ||||||||||||||| |||||||||| |||||| ||||||| || ||||||||||  ||||||||||  ||||||||    
T  2315327 ttgggtgacattgatcaatcacaatgtcacaatgtttgtgaaagagagcgaaacataagcattatggtattgtgattattcaatgtcacctaactctat 2315425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 397 - 485
Target Start/End: Original strand, 551188 - 551276
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||||||||||  |||||| |||| |||||||||| ||||||||||||||||||||||||||||  ||||||||||  |||||||||    
T  551188 ttgggtgacattggtcaatcacaatgccacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcac 551276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 428 - 499
Target Start/End: Complemental strand, 31654389 - 31654318
Alignment:
Q  428 atgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctatatca 499  Q
    |||||| ||||||||||||||||||||||||||||| ||||||||||  ||||||||| |||||||||||||    
T  31654389 atgtttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcacccaactctatatca 31654318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 402 - 485
Target Start/End: Complemental strand, 17751012 - 17750929
Alignment:
Q  402 tgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||||| || |||| |||||||||||| || ||||||||||| ||| |||| |||||||| ||||||||||| |||||||||    
T  17751012 tgacattggccgatcacaatgtcacaatgcttgtgaaagagagataaatacaaacattgtgacattgtgattgaccaatgtcac 17750929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 419 - 486
Target Start/End: Complemental strand, 24587554 - 24587487
Alignment:
Q  419 aatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcact 486  Q
    |||||||||||| || ||||| || |||||||||||||||||||| ||||||||||| ||||||||||    
T  24587554 aatgtcacaatgcttgtgaaaaagcgagaaacacaagcattgtgacattgtgattgaccaatgtcact 24587487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 400 - 480
Target Start/End: Complemental strand, 13043569 - 13043489
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaat 480  Q
    |||||||||| | ||||| ||| |||||||| || ||||||||||||||||||||||||||||| |||  |||||| ||||    
T  13043569 ggtgacattggctaatcacaatatcacaatgcttgtgaaagagagagaaacacaagcattgtgacatttcgattgaccaat 13043489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 491
Target Start/End: Complemental strand, 2315366 - 2315325
Alignment:
Q  450 cacaagcattgtgatattgtgattgatcaatgtcactcaact 491  Q
    ||||| |||||||| ||||||||||||||||||||| |||||    
T  2315366 cacaaacattgtgacattgtgattgatcaatgtcacccaact 2315325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 397 - 485
Target Start/End: Original strand, 3180083 - 3180171
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||| |||||||||    
T  3180083 ttgggtgacattgatcaatcataatgtcacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattgaccaatgtcac 3180171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 400 - 509
Target Start/End: Complemental strand, 3899951 - 3899842
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctatatca 499  Q
    |||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||  ||||||||||  ||||||||| ||||||||| |||    
T  3899951 ggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacccaactctatgtca 3899852  T
Q  500 ttcaagtatt 509  Q
      ||||||||    
T  3899851 cccaagtatt 3899842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 397 - 485
Target Start/End: Complemental strand, 16439253 - 16439165
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||||||||||| |||||| |||||||||||| || ||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  16439253 ttgggtgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattgaccaatgtcac 16439165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 509
Target Start/End: Complemental strand, 16971256 - 16971147
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctatatca 499  Q
    |||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||  ||||||||||  ||||||||| ||| ||||| |||    
T  16971256 ggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcacccaagtctatgtca 16971157  T
Q  500 ttcaagtatt 509  Q
      ||||||||    
T  16971156 cccaagtatt 16971147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 397 - 485
Target Start/End: Complemental strand, 19598446 - 19598359
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||||||||| |||||||||||||||| |||| || |||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  19598446 ttgggtgacattaaccaatcataatgtca-aatgcttgtgaaagagagagaaacacaagcattgtggtattgtgattgaccaatgtcac 19598359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 400 - 495
Target Start/End: Complemental strand, 28819029 - 28818934
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    ||||||||||  ||||||||||||||||||| || ||||||||||||||| ||||| ||||||| ||||||||||| ||||||||| |||||||||    
T  28819029 ggtgacattggtcaatcataatgtcacaatgcttgtgaaagagagagaaatacaagtattgtgacattgtgattgaccaatgtcacccaactctat 28818934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 400 - 485
Target Start/End: Complemental strand, 29699479 - 29699394
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||||||| ||||||| |||||||||||| || ||||||||||||||||||||||||||||  ||||||||||  |||||||||    
T  29699479 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcac 29699394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 400 - 485
Target Start/End: Original strand, 30117854 - 30117939
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    ||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||  ||| ||||||| |||| ||||    
T  30117854 ggtgatattgaccaatcacaatgtcacaatgtttatgaaaaagagagaaacacaagcattgtggcattatgattgaccaatatcac 30117939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 400 - 485
Target Start/End: Complemental strand, 291209 - 291124
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    ||||||||||| |||||| ||||||||||||||| ||||||||| ||||| ||||||||||||  ||||||||||  |||||||||    
T  291209 ggtgacattgatcaatcacaatgtcacaatgtttgtgaaagagaaagaaatacaagcattgtggcattgtgattggccaatgtcac 291124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 400 - 485
Target Start/End: Complemental strand, 19655270 - 19655185
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||||||| ||||||| |||||||||||| || |||||||||||||||||||| |||||||  ||||||||||  |||||||||    
T  19655270 ggtgacattgtccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcac 19655185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 400 - 464
Target Start/End: Complemental strand, 2953302 - 2953238
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgat 464  Q
    |||||||||| ||||||| |||||||||||| || ||||||||||||||||||||||||||||||    
T  2953302 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgat 2953238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 400 - 495
Target Start/End: Original strand, 2093963 - 2094058
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    ||||||||||| |||||| ||||||| |||| || ||||||||||||||||||||||||| ||||| |||||||  ||||| |||| ||| |||||    
T  2093963 ggtgacattgatcaatcacaatgtcataatgcttgtgaaagagagagaaacacaagcattatgatagtgtgattagtcaatatcacccaattctat 2094058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 401 - 485
Target Start/End: Complemental strand, 16802555 - 16802471
Alignment:
Q  401 gtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    ||||||||||||||||| |||||||||||| || | ||||||||||||||||||  ||||| | ||||||||||  |||||||||    
T  16802555 gtgacattgaccaatcagaatgtcacaatgcttgtaaaagagagagaaacacaaatattgttacattgtgattggccaatgtcac 16802471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 413 - 495
Target Start/End: Complemental strand, 26662498 - 26662416
Alignment:
Q  413 aatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    ||||| |||||||||||  || ||||| ||||||||||||||||| ||| | |||||||||| |||||||||| |||||||||    
T  26662498 aatcacaatgtcacaatacttgtgaaaaagagagaaacacaagcaatgtaacattgtgattggtcaatgtcacccaactctat 26662416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 413 - 495
Target Start/End: Complemental strand, 26934093 - 26934011
Alignment:
Q  413 aatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    ||||| |||||||||||  || ||||| ||||||||||||||||| ||| | |||||||||| |||||||||| |||||||||    
T  26934093 aatcacaatgtcacaatacttgtgaaaaagagagaaacacaagcaatgtaacattgtgattggtcaatgtcacccaactctat 26934011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 406 - 495
Target Start/End: Original strand, 38134405 - 38134494
Alignment:
Q  406 attgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    |||| ||||||| |||||||||||| |  ||||||||| ||||||||||||||||||| ||||||||||  |||| |||  |||||||||    
T  38134405 attggccaatcacaatgtcacaatgctagtgaaagagaaagaaacacaagcattgtgacattgtgattggccaatatcatccaactctat 38134494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 412 - 485
Target Start/End: Complemental strand, 12913903 - 12913830
Alignment:
Q  412 caatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||| ||||||| |||| || ||||||||||||| ||||||| ||||||| ||||||||||  |||||||||    
T  12913903 caatcacaatgtcataatgcttgtgaaagagagagatacacaagaattgtgacattgtgattggccaatgtcac 12913830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 495
Target Start/End: Original strand, 16439214 - 16439259
Alignment:
Q  450 cacaagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||    
T  16439214 cacaagcattgtgacattgtgattgatcaatgtcacccaactctat 16439259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 451 - 499
Target Start/End: Original strand, 16802521 - 16802569
Alignment:
Q  451 acaagcattgtgatattgtgattgatcaatgtcactcaactctatatca 499  Q
    ||||||||||||| ||| |||||| ||||||||||||||||||||||||    
T  16802521 acaagcattgtgacattctgattggtcaatgtcactcaactctatatca 16802569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 413 - 485
Target Start/End: Original strand, 2935869 - 2935941
Alignment:
Q  413 aatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    ||||| ||||||| ||||||| | ||||| |||||||||||| |||||||| |||||| ||| ||||| ||||    
T  2935869 aatcacaatgtcataatgtttgtaaaagatagagaaacacaaacattgtgacattgtggttgttcaatatcac 2935941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 485
Target Start/End: Original strand, 32485630 - 32485660
Alignment:
Q  455 gcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||||||||||||||||||||||||||||    
T  32485630 gcattgtgatattgtgattgatcaatgtcac 32485660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 423 - 485
Target Start/End: Original strand, 39031200 - 39031262
Alignment:
Q  423 tcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||||| || ||||||| ||||||| ||||  ||| |||||||||||||||||| ||||||    
T  39031200 tcacaatgcttgtgaaagaaagagaaatacaaatattatgatattgtgattgatcagtgtcac 39031262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 495
Target Start/End: Complemental strand, 3180122 - 3180077
Alignment:
Q  450 cacaagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    ||||| |||||||| ||| ||||||||||||||||| |||||||||    
T  3180122 cacaaacattgtgacattatgattgatcaatgtcacccaactctat 3180077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 468
Target Start/End: Original strand, 43225363 - 43225440
Alignment:
Q  391 tagcacttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattg 468  Q
    |||||||| ||||| |||||||||||| ||||||| ||||    ||||||| |||||||| ||  |||||||||||||    
T  43225363 tagcacttaggtgatattgaccaatcagaatgtcataatgcccgtgaaagaaagagaaactcagacattgtgatattg 43225440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 400 - 459
Target Start/End: Complemental strand, 2356383 - 2356327
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcatt 459  Q
    |||||||||| ||||||| | |||||||||| ||||||||||  ||||||||||||||||    
T  2356383 ggtgacattggccaatcaca-tgtcacaatgcttatgaaaga--gagaaacacaagcatt 2356327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 449 - 485
Target Start/End: Original strand, 17849220 - 17849256
Alignment:
Q  449 acacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||||||||| |||||||||||||| |||||||||    
T  17849220 acacaagcattgcgatattgtgattgaccaatgtcac 17849256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 397 - 495
Target Start/End: Complemental strand, 34062324 - 34062226
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||  ||||||||||  ||||||||| |||||||||    
T  34062324 ttgggtgacattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacataagcattgtggcattgtgattggccaatgtcacccaactctat 34062226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 400 - 514
Target Start/End: Original strand, 8337877 - 8337991
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctatatca 499  Q
    ||||||||||  |||||| ||||||||||||||| |||||||||||||||||||| |||||||  |||||||||| |||||||||| ||||||||| |||    
T  8337877 ggtgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattgtggcattgtgattggtcaatgtcacccaactctatgtca 8337976  T
Q  500 ttcaagtattatccg 514  Q
      |||||||| ||||    
T  8337977 cccaagtattttccg 8337991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 401 - 486
Target Start/End: Original strand, 17127591 - 17127676
Alignment:
Q  401 gtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcact 486  Q
    ||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||| ||| |||||| |||||||||||    
T  17127591 gtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattttgattggtcaatgtcact 17127676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 485
Target Start/End: Original strand, 48993943 - 48994028
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||  |||||||||| ||||||||||    
T  48993943 ggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggtcaatgtcac 48994028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 397 - 509
Target Start/End: Original strand, 46333969 - 46334081
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctata 496  Q
    |||| |||||||| ||||||| |||||||||||| || ||||||||||| ||||||||||||||||| |||||||||| |||||||||  |||||||||     
T  46333969 ttggatgacattggccaatcacaatgtcacaatgcttgtgaaagagagaaaaacacaagcattgtgacattgtgattggtcaatgtcatccaactctatg 46334068  T
Q  497 tcattcaagtatt 509  Q
    |||  ||||||||    
T  46334069 tcacccaagtatt 46334081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 400 - 506
Target Start/End: Complemental strand, 47303507 - 47303401
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctatatca 499  Q
    ||||||||||  |||||| ||||||||||||||| |||||||||||||||||||| |||| ||| |||||||||| ||||| ||||  ||||||||||||    
T  47303507 ggtgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattatgacattgtgattggtcaatatcacctaactctatatca 47303408  T
Q  500 ttcaagt 506  Q
     ||||||    
T  47303407 ctcaagt 47303401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 400 - 485
Target Start/End: Original strand, 741528 - 741613
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||||||| ||||||| |||||||||||| || ||||||||||||||||||||||||||||| |||||||| || |||||||||    
T  741528 ggtgacattgcccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgatcgaccaatgtcac 741613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 397 - 485
Target Start/End: Complemental strand, 37155161 - 37155073
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    ||||||||||||| ||||||| |||||||||||  || ||||||||||||||||||||||||||||| ||||||||||  |||||||||    
T  37155161 ttgggtgacattggccaatcacaatgtcacaatacttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcac 37155073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 400 - 495
Target Start/End: Complemental strand, 29371480 - 29371385
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    ||||| |||||||||||| |||||||||||| || |||||||||||||||||||| |||||||| ||||||||||  |||||||||  ||||||||    
T  29371480 ggtgatattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggccaatgtcacctaactctat 29371385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 400 - 485
Target Start/End: Original strand, 29179623 - 29179708
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    ||||||| |||||||||| |||||||||||| || ||||||||||||||||||||||||||||  ||||||||||  |||||||||    
T  29179623 ggtgacactgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcac 29179708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 400 - 485
Target Start/End: Original strand, 32540774 - 32540859
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||| ||||| ||||||| |||||||||||| || ||||||||||||||||||||||||||| | |||||||||| ||||||||||    
T  32540774 ggtggcattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtaacattgtgattggtcaatgtcac 32540859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 397 - 485
Target Start/End: Complemental strand, 4609111 - 4609023
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||||||||||  |||||| |||||||||||| || |||||||||||||||||||| |||||||| |||||||| | ||||||||||    
T  4609111 ttgggtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgatgggtcaatgtcac 4609023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 400 - 492
Target Start/End: Complemental strand, 15220923 - 15220831
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactc 492  Q
    ||||| |||| ||||||| ||| |||||||| || ||||||||||||||||||||||||||||| || |||||||| ||||||||| ||||||    
T  15220923 ggtgatattggccaatcacaatctcacaatgcttgtgaaagagagagaaacacaagcattgtgagatcgtgattgaccaatgtcacccaactc 15220831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 400 - 484
Target Start/End: Complemental strand, 33219685 - 33219601
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtca 484  Q
    ||||||||||| |||||| ||||||| |||| || ||||||||||| ||||||||||||||| | ||||||||||||||||||||    
T  33219685 ggtgacattgatcaatcacaatgtcataatgcttgtgaaagagagaaaaacacaagcattgtaacattgtgattgatcaatgtca 33219601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 400 - 474
Target Start/End: Complemental strand, 5995481 - 5995407
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattg 474  Q
    |||||||||||||||||| |||| ||||||| || ||||||||||||||||||||||||||||  ||||||||||    
T  5995481 ggtgacattgaccaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattg 5995407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 403 - 485
Target Start/End: Complemental strand, 45728396 - 45728314
Alignment:
Q  403 gacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||||  |||||| ||||||| |||| || |||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  45728396 gacattggtcaatcacaatgtcataatgcttgtgaaagagagagaaacacaagcattgtgatattgtgattggtcaatatcac 45728314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 397 - 482
Target Start/End: Complemental strand, 9157425 - 9157340
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgt 482  Q
    |||| ||||||||| |||||| ||| |||||||| ||  |||||||||||||||||||||||||||| |||||||||| |||||||    
T  9157425 ttggttgacattgatcaatcacaatatcacaatgcttgagaaagagagagaaacacaagcattgtgacattgtgattggtcaatgt 9157340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 400 - 485
Target Start/End: Complemental strand, 48498527 - 48498442
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||||||||||||||| ||||| || ||| || |||||||||||||||||||| ||||||| |||| ||||||| |||||||||    
T  48498527 ggtgacattgaccaatcacaatgttaccatgcttgtgaaagagagagaaacacaaacattgtggtattatgattgaccaatgtcac 48498442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 400 - 491
Target Start/End: Original strand, 48604973 - 48605064
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaact 491  Q
    ||||||||||  |||||| ||||||||||| ||| |||||||||||||||| |||||||||||| ||| | ||||  |||||||||||||||    
T  48604973 ggtgacattggtcaatcacaatgtcacaatatttgtgaaagagagagaaacgcaagcattgtgacattataattggccaatgtcactcaact 48605064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 388 - 485
Target Start/End: Original strand, 44706797 - 44706895
Alignment:
Q  388 gggtagcacttgggtgacattgaccaatcataa-tgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    ||||| |||||||||||||||| ||||||| || || ||||||| || |||||||||||||||||||||||||| |  ||||||||||  |||||||||    
T  44706797 gggtaacacttgggtgacattggccaatcacaaatgccacaatgcttgtgaaagagagagaaacacaagcattgcggcattgtgattggccaatgtcac 44706895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 412 - 485
Target Start/End: Original strand, 1091582 - 1091655
Alignment:
Q  412 caatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||| |||||||||||| || |||||||||||||||||||| |||||||| |||||||||| |||| |||||    
T  1091582 caatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggtcaaagtcac 1091655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 397 - 458
Target Start/End: Original strand, 1819512 - 1819573
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcat 458  Q
    |||||||||||||| |||||| |||||||||||| || ||||||||||||||||||||||||    
T  1819512 ttgggtgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcat 1819573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 450 - 506
Target Start/End: Complemental strand, 1819551 - 1819495
Alignment:
Q  450 cacaagcattgtgatattgtgattgatcaatgtcactcaactctatatcattcaagt 506  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||    
T  1819551 cacaagcattgtgacattgtgattgatcaatgtcacccaactctatgtcattcaagt 1819495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 397 - 495
Target Start/End: Original strand, 38674528 - 38674624
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    |||||||| |||| ||||||| |||||||||||| || ||||||||  ||||||||||||||||||| ||| ||||||  |||| |||| |||||||||    
T  38674528 ttgggtgatattggccaatcacaatgtcacaatgcttgtgaaagag--agaaacacaagcattgtgacattatgattggccaatatcacccaactctat 38674624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 400 - 514
Target Start/End: Original strand, 49444939 - 49445051
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctatatca 499  Q
    |||||||| || |||||| ||||| |||||| || |||  |||||||||||||||||||||||  ||||||||||  ||||||||| ||||||||| |||    
T  49444939 ggtgacatcgatcaatcacaatgttacaatgcttgtga--gagagagaaacacaagcattgtggcattgtgattggccaatgtcacccaactctatgtca 49445036  T
Q  500 ttcaagtattatccg 514  Q
      |||||||| ||||    
T  49445037 cccaagtattttccg 49445051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 436 - 485
Target Start/End: Complemental strand, 21630118 - 21630069
Alignment:
Q  436 gaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  21630118 gaaagagagagaaacacaagcattgtgacattgtgattggtcaatgtcac 21630069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 450 - 514
Target Start/End: Original strand, 4609072 - 4609136
Alignment:
Q  450 cacaagcattgtgatattgtgattgatcaatgtcactcaactctatatcattcaagtattatccg 514  Q
    |||||||||||||| ||||||||||| ||||||||| ||||||||| |||  |||||| ||||||    
T  4609072 cacaagcattgtgacattgtgattgaccaatgtcacccaactctatgtcacacaagtactatccg 4609136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 441 - 485
Target Start/End: Complemental strand, 28395708 - 28395664
Alignment:
Q  441 agagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||    
T  28395708 agagagaaacacaagcattgtgacattgtgattggtcaatgtcac 28395664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 400 - 464
Target Start/End: Original strand, 28928805 - 28928869
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgat 464  Q
    |||||||||| ||||||| ||||||||| || || |||||||||||||||||||| || ||||||    
T  28928805 ggtgacattggccaatcacaatgtcacagtgcttgtgaaagagagagaaacacaaacactgtgat 28928869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 452 - 495
Target Start/End: Original strand, 9157388 - 9157431
Alignment:
Q  452 caagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    |||||||||||||||||||||||||||||||||  |||||||||    
T  9157388 caagcattgtgatattgtgattgatcaatgtcaaccaactctat 9157431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 423 - 481
Target Start/End: Original strand, 36290456 - 36290514
Alignment:
Q  423 tcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatg 481  Q
    |||||||| || ||||||||||||||||||||  ||||||| |||||||||| ||||||    
T  36290456 tcacaatgcttgtgaaagagagagaaacacaaatattgtgacattgtgattggtcaatg 36290514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 495
Target Start/End: Complemental strand, 2573217 - 2573172
Alignment:
Q  450 cacaagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    ||||||||||||||||||||||||  ||||| ||||||||||||||    
T  2573217 cacaagcattgtgatattgtgattagtcaatatcactcaactctat 2573172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 387 - 428
Target Start/End: Original strand, 36774823 - 36774864
Alignment:
Q  387 ggggtagcacttgggtgacattgaccaatcataatgtcacaa 428  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  36774823 ggggtagcacttgggtgacattgatcaatcacaatgtcacaa 36774864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 451 - 514
Target Start/End: Original strand, 32157602 - 32157665
Alignment:
Q  451 acaagcattgtgatattgtgattgatcaatgtcactcaactctatatcattcaagtattatccg 514  Q
    ||||||||||||| | ||||||||| |||||||||  |||||||| |||| |||||| ||||||    
T  32157602 acaagcattgtgacactgtgattgaccaatgtcaccaaactctatgtcatccaagtactatccg 32157665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 435 - 485
Target Start/End: Original strand, 5694950 - 5695000
Alignment:
Q  435 tgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    ||||||||||||||||||||  ||||||| ||||| ||||| |||||||||    
T  5694950 tgaaagagagagaaacacaaatattgtgacattgtaattgaccaatgtcac 5695000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 515
Target Start/End: Complemental strand, 5694951 - 5694887
Alignment:
Q  450 cacaagcattgtgatattgtgattgatcaatgtcactcaactctatatcattcaagtattatccga 515  Q
    |||||||||| | ||||||||||||| |||||||||  |||||||| ||| |||||| ||||||||    
T  5694951 cacaagcatt-taatattgtgattgaccaatgtcaccaaactctatgtcactcaagtgttatccga 5694887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 499
Target Start/End: Complemental strand, 8337913 - 8337865
Alignment:
Q  450 cacaagcattgtgatattgtgattgatcaatgtcactcaactctatatca 499  Q
    ||||| |||||||| ||||||||||| ||||||||| |||||||||||||    
T  8337913 cacaaacattgtgacattgtgattgaccaatgtcac-caactctatatca 8337865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 469
Target Start/End: Original strand, 19711203 - 19711273
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgt 469  Q
    ||||||||||||||||||||| ||||| ||||||  | ||||  ||||||||||| ||| ||||||| |||||    
T  19711203 ttgggtgacattgaccaatcacaatgttacaatgcatgtgaa--agagagaaacataagaattgtgacattgt 19711273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 397 - 433
Target Start/End: Complemental strand, 8337966 - 8337930
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgttt 433  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  8337966 ttgggtgacattgaccaatcacaatgccacaatgttt 8337930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 486
Target Start/End: Complemental strand, 17127626 - 17127590
Alignment:
Q  450 cacaagcattgtgatattgtgattgatcaatgtcact 486  Q
    |||||||||||||| |||||||||| |||||||||||    
T  17127626 cacaagcattgtgacattgtgattggtcaatgtcact 17127590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 7e-29; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 400 - 509
Target Start/End: Complemental strand, 42375122 - 42375013
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctatatca 499  Q
    ||||||||||| |||||| |||||||||||| || ||||||||||||||||||||||||||||  ||||||||||| ||||||||| ||||||||| |||    
T  42375122 ggtgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattgaccaatgtcacccaactctatgtca 42375023  T
Q  500 ttcaagtatt 509  Q
      ||||||||    
T  42375022 cccaagtatt 42375013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 397 - 517
Target Start/End: Original strand, 47404608 - 47404728
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctata 496  Q
    |||||||||||||  |||||| |||||||||||| || |||||||||||||||| |||||||||||  ||||||||||| ||||||||| |||||||||     
T  47404608 ttgggtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacccaagcattgtggcattgtgattgaccaatgtcacccaactctatg 47404707  T
Q  497 tcattcaagtattatccgact 517  Q
    |||  |||||||| |||||||    
T  47404708 tcacccaagtattttccgact 47404728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 401 - 495
Target Start/End: Original strand, 55090023 - 55090117
Alignment:
Q  401 gtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    |||||||||  |||||| |||||||||||| || ||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||    
T  55090023 gtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagagacacaagcattgtgacattgtgattgaccaatgtcactcaactctat 55090117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 485
Target Start/End: Complemental strand, 51265557 - 51265472
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||  ||||||||||  |||||||||    
T  51265557 ggtgacattgaccaatcataatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcac 51265472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 400 - 512
Target Start/End: Complemental strand, 40789291 - 40789179
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctatatca 499  Q
    ||||| |||| ||||||| |||||||||||| || |||||||||||||||||||| |||||||| ||||||||||  |||||||||  |||||||| |||    
T  40789291 ggtgatattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattggccaatgtcaccaaactctatgtca 40789192  T
Q  500 ttcaagtattatc 512  Q
    ||||||| |||||    
T  40789191 ttcaagtgttatc 40789179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 400 - 485
Target Start/End: Original strand, 23444295 - 23444380
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||  ||||||||||  |||||||||    
T  23444295 ggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcac 23444380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 400 - 485
Target Start/End: Complemental strand, 47661954 - 47661869
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||  ||||||||||  |||||||||    
T  47661954 ggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcac 47661869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 397 - 495
Target Start/End: Complemental strand, 52028664 - 52028566
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    ||||||||||||| ||||||| |||||||||||| || |||||||||||||||||||| |||||||| || |||||||  |||| |||| |||||||||    
T  52028664 ttgggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgacatcgtgattggccaatatcacccaactctat 52028566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 400 - 485
Target Start/End: Complemental strand, 6271814 - 6271729
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||||||| ||||||| |||||||||||| || ||||||||||||||||||||||||||||  ||||||||||  |||||||||    
T  6271814 ggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcac 6271729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 400 - 509
Target Start/End: Complemental strand, 53954722 - 53954613
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctatatca 499  Q
    |||||||||| ||||| | |||||||||||| || |||||||| ||||||||| |||||||||| ||||||||||  ||||||||| ||||| |||||||    
T  53954722 ggtgacattgtccaattacaatgtcacaatgcttgtgaaagagtgagaaacactagcattgtgacattgtgattggccaatgtcacccaactttatatca 53954623  T
Q  500 ttcaagtatt 509  Q
      ||||||||    
T  53954622 cccaagtatt 53954613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 397 - 464
Target Start/End: Original strand, 50384128 - 50384195
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgat 464  Q
    ||||||||||||| ||||||| |||||||||||| || ||||||||||||||||||||||||||||||    
T  50384128 ttgggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgat 50384195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 397 - 509
Target Start/End: Original strand, 31430484 - 31430593
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctata 496  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |   |||  ||||| ||||  ||||||||| |||||||||     
T  31430484 ttgggtgacattgaccaatcacaatgtcacaatgcttatgaaagagagagaaacacaaac---gtggcattgtaattggccaatgtcacccaactctatg 31430580  T
Q  497 tcattcaagtatt 509  Q
    |||  ||||||||    
T  31430581 tcacccaagtatt 31430593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 395 - 484
Target Start/End: Original strand, 26186037 - 26186124
Alignment:
Q  395 acttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtca 484  Q
    |||||||||||||||  |||||| |||||||||||| || ||||||||  ||||||||||||||||||| ||||||||||  ||||||||    
T  26186037 acttgggtgacattggtcaatcacaatgtcacaatgcttgtgaaagag--agaaacacaagcattgtgaaattgtgattggccaatgtca 26186124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 400 - 485
Target Start/End: Complemental strand, 35682278 - 35682193
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    ||||||||||||| |||| |||||||||||| || ||||||| ||||||||||||| ||| ||| ||||||||||  |||||||||    
T  35682278 ggtgacattgaccgatcacaatgtcacaatgcttgtgaaagatagagaaacacaagtattatgacattgtgattggccaatgtcac 35682193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 400 - 485
Target Start/End: Complemental strand, 47762720 - 47762635
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    ||||||||||  ||| ||||||||||||||| || ||||||||||||||||| || |||||| | |||||||||| ||||||||||    
T  47762720 ggtgacattggtcaaccataatgtcacaatgcttgtgaaagagagagaaacataaacattgtaacattgtgattggtcaatgtcac 47762635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 397 - 464
Target Start/End: Original strand, 28693946 - 28694013
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgat 464  Q
    |||| |||||||||||||||| ||| ||||||||||| |||||||||||||||||||| |||| ||||    
T  28693946 ttggatgacattgaccaatcacaatatcacaatgtttgtgaaagagagagaaacacaaacattatgat 28694013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 391 - 485
Target Start/End: Original strand, 31532706 - 31532800
Alignment:
Q  391 tagcacttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    ||||||||| |||||||||  |||||| ||||||||||| | | | ||||||||||||| |||| ||||||||  ||||||||| ||||||||||    
T  31532706 tagcacttgtgtgacattgttcaatcacaatgtcacaatatatgtaaaagagagagaaatacaaacattgtgacgttgtgattggtcaatgtcac 31532800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 412 - 464
Target Start/End: Original strand, 45591448 - 45591500
Alignment:
Q  412 caatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgat 464  Q
    ||||||||||||||||||| || |||||||||||||||||||| |||||||||    
T  45591448 caatcataatgtcacaatgcttgtgaaagagagagaaacacaaacattgtgat 45591500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 397 - 464
Target Start/End: Original strand, 24006093 - 24006160
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgat 464  Q
    ||||||||||||| ||||||| |||| ||||||| || ||||||||||||||||| || |||||||||    
T  24006093 ttgggtgacattggccaatcacaatgacacaatgcttgtgaaagagagagaaacataaacattgtgat 24006160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 402 - 465
Target Start/End: Original strand, 25818401 - 25818464
Alignment:
Q  402 tgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgata 465  Q
    ||||||||  |||||| |||||||||||| || |||||||||||||||||||| ||||||||||    
T  25818401 tgacattggtcaatcacaatgtcacaatgattgtgaaagagagagaaacacaatcattgtgata 25818464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 423 - 485
Target Start/End: Original strand, 30861823 - 30861885
Alignment:
Q  423 tcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||||| || ||||||||||||||||||||||||||||  ||||||||||  |||||||||    
T  30861823 tcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcac 30861885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 429
Target Start/End: Complemental strand, 17285854 - 17285813
Alignment:
Q  388 gggtagcacttgggtgacattgaccaatcataatgtcacaat 429  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  17285854 gggtagcacttgggtgacattgaccaatcacaatgtcacaat 17285813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 495
Target Start/End: Complemental strand, 55090058 - 55090013
Alignment:
Q  450 cacaagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||    
T  55090058 cacaagcattgtgacattgtgattgaccaatgtcactcaactctat 55090013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 388 - 427
Target Start/End: Complemental strand, 6607539 - 6607500
Alignment:
Q  388 gggtagcacttgggtgacattgaccaatcataatgtcaca 427  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  6607539 gggtagcacttgggtgacattgaccaaccataatgtcaca 6607500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 495
Target Start/End: Complemental strand, 47404647 - 47404602
Alignment:
Q  450 cacaagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    |||||||||||||| ||||||||||| ||||||||| |||||||||    
T  47404647 cacaagcattgtgacattgtgattgaccaatgtcacccaactctat 47404602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 454 - 495
Target Start/End: Complemental strand, 55089935 - 55089894
Alignment:
Q  454 agcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    |||||||||| ||||||||||| |||||||||||||||||||    
T  55089935 agcattgtgacattgtgattgaccaatgtcactcaactctat 55089894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 428
Target Start/End: Complemental strand, 9712996 - 9712956
Alignment:
Q  388 gggtagcacttgggtgacattgaccaatcataatgtcacaa 428  Q
    ||||||||||||||||||||||||||| || ||||||||||    
T  9712996 gggtagcacttgggtgacattgaccaaccacaatgtcacaa 9712956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 485
Target Start/End: Original strand, 42375086 - 42375121
Alignment:
Q  450 cacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||||||||||| |||||||||||||||||||||    
T  42375086 cacaagcattgtgacattgtgattgatcaatgtcac 42375121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 463
Target Start/End: Complemental strand, 44380042 - 44379979
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtga 463  Q
    ||||| |||||||||||| ||||| |||||  |||| ||| |||||||||| ||||||||||||    
T  44380042 ggtgatattgaccaatcacaatgttacaatacttataaaatagagagaaacgcaagcattgtga 44379979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 495
Target Start/End: Complemental strand, 31430520 - 31430478
Alignment:
Q  453 aagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    ||||||||||| |||||||||| |||||||||| |||||||||    
T  31430520 aagcattgtgacattgtgattggtcaatgtcacccaactctat 31430478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 495
Target Start/End: Complemental strand, 50384167 - 50384122
Alignment:
Q  450 cacaagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    |||||||||||||| ||||||||||  ||||||||| |||||||||    
T  50384167 cacaagcattgtgacattgtgattggccaatgtcacccaactctat 50384122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 401 - 485
Target Start/End: Complemental strand, 6722062 - 6721978
Alignment:
Q  401 gtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||| |||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6722062 gtgatattggccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaagcattgtgatattgtgattggtcaatgtcac 6721978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 400 - 495
Target Start/End: Complemental strand, 38933699 - 38933604
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    |||||| ||| |||||||||||||||||||| || ||||||||||||||||||||||||||||  |||||||||| |||||||||| |||||||||    
T  38933699 ggtgacgttggccaatcataatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggtcaatgtcacccaactctat 38933604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 397 - 495
Target Start/End: Complemental strand, 2828699 - 2828601
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    ||||||||||||| ||||||| |||||||||||| || ||||||||||||||||||||||||| ||| ||||||||||  ||||||||| |||||||||    
T  2828699 ttgggtgacattggccaatcacaatgtcacaatgcttctgaaagagagagaaacacaagcattttgacattgtgattggccaatgtcacccaactctat 2828601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 401 - 485
Target Start/End: Original strand, 37762028 - 37762112
Alignment:
Q  401 gtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    ||||||||||||||||| |||||| ||||| || ||||||||| ||||||||||||||||||||||||||||||| | |||||||    
T  37762028 gtgacattgaccaatcacaatgtcgcaatgcttgtgaaagagaaagaaacacaagcattgtgatattgtgattgacccatgtcac 37762112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 400 - 509
Target Start/End: Original strand, 6217250 - 6217359
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctatatca 499  Q
    |||||||||| ||||||| |||| ||||||| || |||||||||||||||||||| |||||||  ||||||||||  ||||||||| ||||||||| |||    
T  6217250 ggtgacattggccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacccaactctatgtca 6217349  T
Q  500 ttcaagtatt 509  Q
      ||||||||    
T  6217350 cccaagtatt 6217359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 400 - 495
Target Start/End: Original strand, 14229379 - 14229473
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    ||||||||||  |||||| |||||||||||| || ||||||||||||||||||||||||||||| ||||||||||  ||||||||  |||||||||    
T  14229379 ggtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattg-ccaatgtcatccaactctat 14229473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 397 - 495
Target Start/End: Complemental strand, 2894078 - 2893980
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    |||| ||||||||  |||||| | |||||||||| || ||||||||||||||| ||||||||||||| ||||||||||  ||||||||| |||||||||    
T  2894078 ttggatgacattggtcaatcacagtgtcacaatgcttgtgaaagagagagaaatacaagcattgtgagattgtgattggccaatgtcacccaactctat 2893980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 401 - 495
Target Start/End: Complemental strand, 37961817 - 37961723
Alignment:
Q  401 gtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    ||||||||||||||||| |||| ||||||| || |||||||||||||||||||| |||| ||  |||||||| | |||||||||| |||||||||    
T  37961817 gtgacattgaccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattatggcattgtgatcggtcaatgtcacccaactctat 37961723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 400 - 485
Target Start/End: Complemental strand, 16514536 - 16514451
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||| ||  || |||||||  |||||||||    
T  16514536 ggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattatggcatagtgattggccaatgtcac 16514451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 400 - 474
Target Start/End: Original strand, 14470618 - 14470692
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattg 474  Q
    |||||||||||||||||| |||||  ||||| || |||||||||||||||||||| |||||||| ||||||||||    
T  14470618 ggtgacattgaccaatcacaatgttgcaatgcttgtgaaagagagagaaacacaaacattgtgacattgtgattg 14470692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 401 - 474
Target Start/End: Complemental strand, 15011391 - 15011318
Alignment:
Q  401 gtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattg 474  Q
    ||||||||| ||||||| |||||||||||| || |||||||||||||||||||| |||||||  ||||||||||    
T  15011391 gtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattg 15011318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 400 - 495
Target Start/End: Original strand, 29925596 - 29925691
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    |||||||||| ||  ||| ||||||| |||| || |||||||||||||||||||| |||||||  ||||||||||  ||||||||| |||||||||    
T  29925596 ggtgacattggcccctcacaatgtcagaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacccaactctat 29925691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 400 - 485
Target Start/End: Original strand, 29508716 - 29508802
Alignment:
Q  400 ggtgacattgaccaatcataa-tgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||||||||||||||| || || ||||||| || |||||||||||||||||||||||||| |  ||||||||||  |||||||||    
T  29508716 ggtgacattgaccaatcacaaatgccacaatgcttgtgaaagagagagaaacacaagcattgcggcattgtgattggccaatgtcac 29508802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 450 - 513
Target Start/End: Original strand, 15011356 - 15011419
Alignment:
Q  450 cacaagcattgtgatattgtgattgatcaatgtcactcaactctatatcattcaagtattatcc 513  Q
    |||||||||||||| ||||||||||  ||||||||||||||||||| |||  ||||||||||||    
T  15011356 cacaagcattgtgacattgtgattggccaatgtcactcaactctatgtcacccaagtattatcc 15011419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 400 - 445
Target Start/End: Complemental strand, 32545900 - 32545855
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagaga 445  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||    
T  32545900 ggtgacattggccaatcataatgtcacaatgcttatgaaagagaga 32545855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 400 - 474
Target Start/End: Complemental strand, 14892372 - 14892299
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattg 474  Q
    ||||||||||| |||||| ||||| |||||  |||||||||||||||||| |||| || ||||| ||||||||||    
T  14892372 ggtgacattgatcaatcacaatgttacaatacttatgaaagagagagaaagacaaaca-tgtgacattgtgattg 14892299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 495
Target Start/End: Complemental strand, 14464617 - 14464572
Alignment:
Q  450 cacaagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    |||||| ||||||| ||||||||||| |||||||||||||||||||    
T  14464617 cacaagtattgtgacattgtgattgaccaatgtcactcaactctat 14464572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 450 - 494
Target Start/End: Complemental strand, 37762063 - 37762019
Alignment:
Q  450 cacaagcattgtgatattgtgattgatcaatgtcactcaactcta 494  Q
    ||||||||||| || |||||||||| |||||||||||||||||||    
T  37762063 cacaagcattgcgacattgtgattggtcaatgtcactcaactcta 37762019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 445 - 495
Target Start/End: Original strand, 2143943 - 2143993
Alignment:
Q  445 agaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    ||||||||||||||| ||| ||||||||||  ||| |||||||||||||||    
T  2143943 agaaacacaagcattatgacattgtgattggccaacgtcactcaactctat 2143993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 400 - 486
Target Start/End: Complemental strand, 10086869 - 10086783
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcact 486  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||| ||| ||||||||||| ||||||||||    
T  10086869 ggtgacattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattatgacattgtgattgaccaatgtcact 10086783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 397 - 499
Target Start/End: Original strand, 34541826 - 34541928
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctata 496  Q
    ||||||||||||| ||||||||||| |||||||| || ||||||||||||||||||||||||||||  ||| || | | |||||||||||||||||||||    
T  34541826 ttgggtgacattggccaatcataatatcacaatgcttgtgaaagagagagaaacacaagcattgtggcattttgctaggtcaatgtcactcaactctata 34541925  T
Q  497 tca 499  Q
    |||    
T  34541926 tca 34541928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 485
Target Start/End: Complemental strand, 5033273 - 5033188
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||  |||||||||| ||||||||||    
T  5033273 ggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggtcaatgtcac 5033188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 400 - 485
Target Start/End: Complemental strand, 8796534 - 8796449
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||||||||||||||| |||||||||||| || ||||||| ||||||||||||||||||||| ||||||||||| |||| ||||    
T  8796534 ggtgacattgaccaatcaaaatgtcacaatgcttgtgaaagatagagaaacacaagcattgtgacattgtgattgaccaatatcac 8796449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 400 - 485
Target Start/End: Original strand, 35440995 - 35441080
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||  ||||||||||  |||||||||    
T  35440995 ggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcac 35441080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 412 - 506
Target Start/End: Complemental strand, 6296705 - 6296611
Alignment:
Q  412 caatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctatatcattcaagt 506  Q
    |||| |||||||||||||  || ||||||||||||||||||||||||| ||| |||||||||| |||||||||| ||||||||| |||| |||||    
T  6296705 caattataatgtcacaatacttgtgaaagagagagaaacacaagcattatgacattgtgattggtcaatgtcacccaactctatgtcatccaagt 6296611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 400 - 485
Target Start/End: Original strand, 33841617 - 33841702
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||||||||||||||| | |||||||||| || ||||||||||||||||||||||||||||  ||| |||||| ||||||||||    
T  33841617 ggtgacattgaccaatcacattgtcacaatgcttgtgaaagagagagaaacacaagcattgtggcattctgattggtcaatgtcac 33841702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 400 - 485
Target Start/End: Complemental strand, 5667209 - 5667124
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||||||| ||||| | ||||||| |||| || ||||||||||||||| ||||||||||||| ||||||||||| |||||||||    
T  5667209 ggtgacattggccaattacaatgtcataatgcttgtgaaagagagagaaatacaagcattgtgacattgtgattgaccaatgtcac 5667124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 400 - 497
Target Start/End: Complemental strand, 39851067 - 39850970
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctatat 497  Q
    |||||||||||||||||| ||| | | |||| || |||||||||||||||||||| |||||||  ||||||||||  ||||||||| |||||||||||    
T  39851067 ggtgacattgaccaatcacaatattataatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacccaactctatat 39850970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 401 - 485
Target Start/End: Original strand, 8243415 - 8243499
Alignment:
Q  401 gtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||||||| |||||| |||| ||||||| || ||||||||||||||||||||||||||||  ||||||||||| ||| |||||    
T  8243415 gtgacattgatcaatcacaatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattgaccaacgtcac 8243499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 400 - 485
Target Start/End: Original strand, 45191153 - 45191238
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||||||||  ||||| |||| ||||||| ||||||||||||||||||||||| |||||| | ||| |||||| ||||||||||    
T  45191153 ggtgacattgattaatcacaatgccacaatgcttatgaaagagagagaaacacaaacattgtaacattttgattggtcaatgtcac 45191238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 400 - 475
Target Start/End: Complemental strand, 34229753 - 34229678
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattga 475  Q
    ||||||||||  |||||| ||| |||||||| || ||||||||||||||||||||||||| ||| |||||||||||    
T  34229753 ggtgacattggtcaatcacaatatcacaatgcttgtgaaagagagagaaacacaagcattctgacattgtgattga 34229678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 401 - 484
Target Start/End: Complemental strand, 4958709 - 4958627
Alignment:
Q  401 gtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtca 484  Q
    ||||||||||||||||| || ||||||||  || |||||||||||||||||||| |||| ||| ||||||||||  ||||||||    
T  4958709 gtgacattgaccaatcacaa-gtcacaatacttgtgaaagagagagaaacacaaacattatgacattgtgattggccaatgtca 4958627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 400 - 516
Target Start/End: Complemental strand, 31159963 - 31159855
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctatatca 499  Q
    |||||||||  |||||||||||||||||||| || ||||||||||||||||| ||        ||||||||||||||||||||||| ||| | ||| |||    
T  31159963 ggtgacattcgccaatcataatgtcacaatgcttgtgaaagagagagaaacaaaa--------atattgtgattgatcaatgtcacccaattttatgtca 31159872  T
Q  500 ttcaagtattatccgac 516  Q
     ||||||  ||||||||    
T  31159871 ctcaagtgctatccgac 31159855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 439 - 485
Target Start/End: Original strand, 43844534 - 43844580
Alignment:
Q  439 agagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||    
T  43844534 agagagagaaacacaagcattgtgacattgtgattgatcaatatcac 43844580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 450 - 495
Target Start/End: Complemental strand, 8243450 - 8243405
Alignment:
Q  450 cacaagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    |||||||||||||  |||||||||||||||||||||||||||||||    
T  8243450 cacaagcattgtggcattgtgattgatcaatgtcactcaactctat 8243405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 495
Target Start/End: Original strand, 34229717 - 34229762
Alignment:
Q  450 cacaagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    |||||||||||||||||||||||||| |||||||||  ||||||||    
T  34229717 cacaagcattgtgatattgtgattgaccaatgtcacctaactctat 34229762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 449
Target Start/End: Original strand, 35031640 - 35031689
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaa 449  Q
    ||||||||||| |||||| |||||| ||||| || |||||||||||||||    
T  35031640 ggtgacattgatcaatcacaatgtcgcaatgcttgtgaaagagagagaaa 35031689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 485
Target Start/End: Complemental strand, 11016981 - 11016896
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||  ||||||||||  |||||||||    
T  11016981 ggtgacattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaagcattgtggcattgtgattggccaatgtcac 11016896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 485
Target Start/End: Complemental strand, 15027654 - 15027569
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||||||||||||||| |||||||||||| || |||||||||||||||||||| ||||||| ||||||||||| ||||||||||    
T  15027654 ggtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggtattgtgattggtcaatgtcac 15027569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 397 - 485
Target Start/End: Original strand, 27028816 - 27028904
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||| ||||||  |||||| |||||||||||| || |||||||||||||||||||| |||||||| ||||||||||| |||||||||    
T  27028816 ttgggtaacattggacaatcacaatgtcacaatgcttctgaaagagagagaaacacaaacattgtgacattgtgattgaccaatgtcac 27028904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 397 - 485
Target Start/End: Original strand, 41018251 - 41018339
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    ||||||||||||| ||||||| |||||| ||||| || ||||||||||||||||| ||||||||||  |||||||||| ||||||||||    
T  41018251 ttgggtgacattggccaatcacaatgtcccaatgcttgtgaaagagagagaaacataagcattgtggcattgtgattggtcaatgtcac 41018339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 400 - 495
Target Start/End: Complemental strand, 42628407 - 42628312
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    ||||| |||| ||||||| |||||| ||||| || ||||||||||||||||| ||||||||||  |||||||||| |||||||||| |||||||||    
T  42628407 ggtgatattggccaatcacaatgtcccaatgcttgtgaaagagagagaaacataagcattgtggcattgtgattggtcaatgtcacccaactctat 42628312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 400 - 482
Target Start/End: Complemental strand, 38975917 - 38975835
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgt 482  Q
    ||||||||||| |||| |||||| ||||||| || ||||||||||||||||||||||||||||  ||||||||||| ||||||    
T  38975917 ggtgacattgatcaattataatgccacaatgcttgtgaaagagagagaaacacaagcattgtggcattgtgattgaccaatgt 38975835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 400 - 509
Target Start/End: Original strand, 29053340 - 29053449
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctatatca 499  Q
    |||||||||| ||||||| |||| | ||||| || |||||||||||||||||||| |||||||  ||||||||||  ||||||||| ||||||||| |||    
T  29053340 ggtgacattggccaatcacaatgcctcaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacccaactctatgtca 29053439  T
Q  500 ttcaagtatt 509  Q
      ||||||||    
T  29053440 cccaagtatt 29053449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 400 - 474
Target Start/End: Complemental strand, 48000849 - 48000775
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattg 474  Q
    |||||||||||||||||| |||| |||||||| | |||||||||||||||||||| |||||||  ||||||||||    
T  48000849 ggtgacattgaccaatcacaatgccacaatgtctgtgaaagagagagaaacacaaacattgtggcattgtgattg 48000775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 400 - 485
Target Start/End: Complemental strand, 4290657 - 4290572
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||||||| ||||||| |||||||||||  || |||||||||||||||||| |||||||||  ||||||||||| |||| ||||    
T  4290657 ggtgacattggccaatcacaatgtcacaattcttgtgaaagagagagaaacacgagcattgtggcattgtgattgaccaatatcac 4290572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 400 - 485
Target Start/End: Original strand, 34854721 - 34854806
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    |||||||||| ||||||| |||| ||||||| || ||||||||| |||||||||| |||||||  ||||||||||| |||||||||    
T  34854721 ggtgacattggccaatcacaatgccacaatgcttgtgaaagagatagaaacacaaacattgtggcattgtgattgaccaatgtcac 34854806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 397 - 485
Target Start/End: Original strand, 7671934 - 7672022
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    ||||||||||||  ||||||| |||| ||||||| || |||||||||||||||||||| |||||||  ||||||||||  |||||||||    
T  7671934 ttgggtgacattagccaatcacaatgccacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcac 7672022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 400 - 495
Target Start/End: Complemental strand, 4649434 - 4649337
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagaga--aacacaagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    ||||||||||  |||||| |||||||| ||| || |||||||||||||  ||||||||||||||   ||||||||||| ||||||||| |||||||||    
T  4649434 ggtgacattggtcaatcacaatgtcacgatgcttgtgaaagagagagagaaacacaagcattgtagcattgtgattgaccaatgtcacccaactctat 4649337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 397 - 485
Target Start/End: Original strand, 45231877 - 45231961
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    ||||||||||||||||||||| |||| |||    ||| ||||||||||||||||| ||||||||| | ||||||||||  |||||||||    
T  45231877 ttgggtgacattgaccaatcacaatgccac----tttgtgaaagagagagaaacaaaagcattgtaacattgtgattggccaatgtcac 45231961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 400 - 489
Target Start/End: Complemental strand, 10419570 - 10419481
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaa 489  Q
    |||||||||| |  |||| ||||||||||   || ||||||||||||||||||||| ||||| | ||| ||||||| |||||||||||||    
T  10419570 ggtgacattggctgatcacaatgtcacaaaacttgtgaaagagagagaaacacaagtattgtaacattatgattgaccaatgtcactcaa 10419481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 474
Target Start/End: Original strand, 22764761 - 22764800
Alignment:
Q  435 tgaaagagagagaaacacaagcattgtgatattgtgattg 474  Q
    |||||||||||||||||||| |||||||| ||||||||||    
T  22764761 tgaaagagagagaaacacaaacattgtgacattgtgattg 22764800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 518
Target Start/End: Original strand, 30165329 - 30165391
Alignment:
Q  456 cattgtgatattgtgattgatcaatgtcactcaactctatatcattcaagtattatccgacta 518  Q
    |||| ||| ||||||||||| ||||||||| |||||||||||||  |||||  ||||||||||    
T  30165329 cattatgacattgtgattgaccaatgtcacccaactctatatcacacaagtcctatccgacta 30165391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 474
Target Start/End: Original strand, 30217504 - 30217554
Alignment:
Q  424 cacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattg 474  Q
    ||||||| || ||||||||||||||||| || |||| ||||||||||||||    
T  30217504 cacaatgcttgtgaaagagagagaaacataaacattttgatattgtgattg 30217554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 449
Target Start/End: Original strand, 48000720 - 48000769
Alignment:
Q  400 ggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaa 449  Q
    ||||||||||| |||||| |||| ||||||| || |||||||||||||||    
T  48000720 ggtgacattgatcaatcacaatgccacaatgcttgtgaaagagagagaaa 48000769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 445 - 485
Target Start/End: Complemental strand, 27028795 - 27028755
Alignment:
Q  445 agaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    ||||||||||||||||||| ||||||||||  |||||||||    
T  27028795 agaaacacaagcattgtgacattgtgattgtccaatgtcac 27028755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 506
Target Start/End: Complemental strand, 41018290 - 41018234
Alignment:
Q  450 cacaagcattgtgatattgtgattgatcaatgtcactcaactctatatcattcaagt 506  Q
    ||||||||||| || ||||||||||  ||||||||| ||||||||| |||| |||||    
T  41018290 cacaagcattgggacattgtgattggccaatgtcacccaactctatgtcatccaagt 41018234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 397 - 509
Target Start/End: Complemental strand, 63872 - 63760
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctata 496  Q
    ||||||||||||| ||||||| |||||||||||| || |||||||||||||||||||| |||||||  ||||||||||  ||||||||| |||||||||     
T  63872 ttgggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaaacattgtggcattgtgattggccaatgtcacccaactctatg 63773  T
Q  497 tcattcaagtatt 509  Q
    |||  ||||||||    
T  63772 tcacccaagtatt 63760  T

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Target: scaffold0047; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 450 - 499
Target Start/End: Original strand, 63833 - 63882
Alignment:
Q  450 cacaagcattgtgatattgtgattgatcaatgtcactcaactctatatca 499  Q
    |||||||||||||| ||||||||||  ||||||||| |||||||||||||    
T  63833 cacaagcattgtgacattgtgattggccaatgtcacccaactctatatca 63882  T

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Target: scaffold0016 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 402 - 495
Target Start/End: Original strand, 49731 - 49824
Alignment:
Q  402 tgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcactcaactctat 495  Q
    |||||||||||||||| |||||||||||| || ||||||| ||||||||||||||||||||  ||||||||||  |||||||||  ||||||||    
T  49731 tgacattgaccaatcacaatgtcacaatgcttgtgaaagaaagagaaacacaagcattgtggcattgtgattggccaatgtcacctaactctat 49824  T

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Target: scaffold0586 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 411 - 485
Target Start/End: Original strand, 7084 - 7158
Alignment:
Q  411 ccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattgatcaatgtcac 485  Q
    ||||||| |||||||||||| || ||||||||||||||||||||||||||||| ||||||||||  |||||||||    
T  7084 ccaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattgtgacattgtgattggccaatgtcac 7158  T

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Target: scaffold0481 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 397 - 461
Target Start/End: Original strand, 2910 - 2974
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgt 461  Q
    |||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||    
T  2910 ttgggtgatattgaccaatcacaatgtcacaatgtttgtgaaagagagagaaacacaaacattgt 2974  T

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Target: scaffold1033 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 397 - 460
Target Start/End: Complemental strand, 2328 - 2265
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattg 460  Q
    ||||| |||||||| |||||| |||||||||||| || ||||||||||||||||||||||||||    
T  2328 ttgggcgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattg 2265  T

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Target: scaffold1033; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 483
Target Start/End: Original strand, 2289 - 2322
Alignment:
Q  450 cacaagcattgtgatattgtgattgatcaatgtc 483  Q
    |||||||||||||| |||||||||||||||||||    
T  2289 cacaagcattgtgacattgtgattgatcaatgtc 2322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 397 - 460
Target Start/End: Complemental strand, 2328 - 2265
Alignment:
Q  397 ttgggtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattg 460  Q
    ||||| |||||||| |||||| |||||||||||| || ||||||||||||||||||||||||||    
T  2328 ttgggcgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaacacaagcattg 2265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 450 - 483
Target Start/End: Original strand, 2289 - 2322
Alignment:
Q  450 cacaagcattgtgatattgtgattgatcaatgtc 483  Q
    |||||||||||||| |||||||||||||||||||    
T  2289 cacaagcattgtgacattgtgattgatcaatgtc 2322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 401 - 474
Target Start/End: Original strand, 27247 - 27320
Alignment:
Q  401 gtgacattgaccaatcataatgtcacaatgtttatgaaagagagagaaacacaagcattgtgatattgtgattg 474  Q
    |||| |||| ||||||| ||||||| |||  || ||||||||||||||||| ||||||||||  ||||||||||    
T  27247 gtgatattggccaatcacaatgtcataattcttgtgaaagagagagaaacagaagcattgtggcattgtgattg 27320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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