View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21126_high_3 (Length: 414)
Name: NF21126_high_3
Description: NF21126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21126_high_3 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 10 - 414
Target Start/End: Original strand, 24336726 - 24337130
Alignment:
| Q |
10 |
ccaagaatatcacttgaagtatttggctcaccaaatccaatattgatcaataccaaaagaaattcattgaccaatgataaaaggttgatatttccaaaaa |
109 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24336726 |
ccaagaaaatcacttgaagtatttggttcaccaaatccaatattgatcaataccaaaagaaattcattgaccaatgataaaaggttgatatttccaaaaa |
24336825 |
T |
|
| Q |
110 |
tggaagaaattgataatgcaaactnnnnnnnnnnnnnnnnnnnnnctgcaagtgatgcaagttcagatttatttgagattgagagtctcaaaggaaaacc |
209 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24336826 |
tggaagaaattgataatgcaaactatgatgatgatgatgatgatgctgcaagtgatgcaagttcagatttatttgagattgagagtctcaaaggaaaacc |
24336925 |
T |
|
| Q |
210 |
ctccaagaacaattttcttaatagacagacatcagatgctgcttcaagttgccttagcccgacttgttatgagccgagtgaggcaagcatagaatggcgt |
309 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||| || |
|
|
| T |
24336926 |
ctccaacaacaattttcttactagacagacatcagatgctgcttcaagttgccttagcccgaattgttacgcgccgagtgaggcaagcatagaatggagt |
24337025 |
T |
|
| Q |
310 |
gtggtcagtgcaagtgctgcagtgatgacagattgtgaagctcaaaggactgagattacaagaaggagtccactaaggaccacctagaaacaataggttg |
409 |
Q |
| |
|
||||| | ||||||||||||||| ||| |||||||||||| ||||| | ||||| |||||| |||||||||| ||||||| | | ||||| | |||||| |
|
|
| T |
24337026 |
gtggtaactgcaagtgctgcagttatgtcagattgtgaagatcaaatgtctgagtttacaataaggagtccaataaggacaccattgaaaccaaaggttg |
24337125 |
T |
|
| Q |
410 |
ctaag |
414 |
Q |
| |
|
||||| |
|
|
| T |
24337126 |
ctaag |
24337130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 191
Target Start/End: Complemental strand, 17744986 - 17744954
Alignment:
| Q |
159 |
aagtgatgcaagttcagatttatttgagattga |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
17744986 |
aagtgatgcaagttcagatttatttgagattga |
17744954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University