View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21126_high_5 (Length: 347)
Name: NF21126_high_5
Description: NF21126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21126_high_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 7555628 - 7555303
Alignment:
| Q |
1 |
cggttgcttcgagaaatacacgtacgaggttcagttctcaaccaaaaagaaccaccgctgctttttatttacccgatgaatgttggcaacttgtcttcaa |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7555628 |
cggttgcttcgagaaacacacgtacgaggttcagttctcaaccaaaaagaaccaccgctgctttttatttacccgatgaatgttggcaacttgtcttcaa |
7555529 |
T |
|
| Q |
101 |
aattctcaacaatggcgacgacaaccgttatttgaagactctctccctcgtttccaaacagtttctctctatcaccaaccctcttttattctcactcata |
200 |
Q |
| |
|
| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
7555528 |
atttctcaacaacggtgacgacaaccgttatttgaagactctctccctcgtttccaaacagtttctctctatcaccaaccctctcttattctcactcata |
7555429 |
T |
|
| Q |
201 |
attgaccaccgactacgctccttcctccctcgtcttttccataggttcaccaacctcacctcccttgtcttcgctcgcaactgccgtgatatcgacaagc |
300 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7555428 |
attgaccaccgactactctccttcctccctcgtcttttccataggttcaccaacctcacctcccttgtcttcgctcgcaactgccttgatatcgacaagc |
7555329 |
T |
|
| Q |
301 |
tacttagcgaaatctcttgtttccca |
326 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
7555328 |
tacttagcgaaatctcttgtttccca |
7555303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 7561390 - 7561329
Alignment:
| Q |
57 |
gctgctttttatttacccgatgaatgttggcaacttgtcttcaaaattctcaacaatggcga |
118 |
Q |
| |
|
|||| |||||||||||| ||||| |||||| ||| ||||||||| | |||||||||||||| |
|
|
| T |
7561390 |
gctgatttttatttacctgatgactgttggaaacatgtcttcaagttcctcaacaatggcga |
7561329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 267
Target Start/End: Complemental strand, 33161407 - 33161362
Alignment:
| Q |
222 |
ttcctccctcgtcttttccataggttcaccaacctcacctcccttg |
267 |
Q |
| |
|
|||||||||||||| || | ||||||||||||||||||||||||| |
|
|
| T |
33161407 |
ttcctccctcgtctcttgaaaaggttcaccaacctcacctcccttg |
33161362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 41900258 - 41900304
Alignment:
| Q |
139 |
ctctctccctcgtttccaaacagtttctctctatcaccaaccctctt |
185 |
Q |
| |
|
||||||| ||||| ||||||||||||||||| ||||||||| ||||| |
|
|
| T |
41900258 |
ctctctcactcgtctccaaacagtttctctccatcaccaacactctt |
41900304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 12846992 - 12846952
Alignment:
| Q |
140 |
tctctccctcgtttccaaacagtttctctctatcaccaacc |
180 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| |||||||||| |
|
|
| T |
12846992 |
tctctccctcgtttccaagcagttcctctccatcaccaacc |
12846952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 29022089 - 29022049
Alignment:
| Q |
139 |
ctctctccctcgtttccaaacagtttctctctatcaccaac |
179 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||| ||||| |
|
|
| T |
29022089 |
ctctctccctcgtctccaagcagtttctctctatctccaac |
29022049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 265
Target Start/End: Complemental strand, 553962 - 553925
Alignment:
| Q |
228 |
cctcgtcttttccataggttcaccaacctcacctccct |
265 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
553962 |
cctcgccttttccaaaggttcaccaacctcacctccct |
553925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 532947 - 532903
Alignment:
| Q |
223 |
tcctccctcgtcttttccataggttcaccaacctcacctcccttg |
267 |
Q |
| |
|
|||||||||| || |||| ||| |||||||||||||||||||||| |
|
|
| T |
532947 |
tcctccctcgcctcttccgtagattcaccaacctcacctcccttg |
532903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 179
Target Start/End: Original strand, 15091357 - 15091397
Alignment:
| Q |
139 |
ctctctccctcgtttccaaacagtttctctctatcaccaac |
179 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
15091357 |
ctctctccctcgtctccaaacagttcctctccatcaccaac |
15091397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University