View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21126_low_11 (Length: 238)
Name: NF21126_low_11
Description: NF21126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21126_low_11 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 40607318 - 40607091
Alignment:
| Q |
11 |
tatttgttttaattgatatatcagtgccttgaaagcactttttaacattctcctaacaaaatttgagagaagaaaaatagtataatggctagtggctttg |
110 |
Q |
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| T |
40607318 |
tatttgttttagttgattgatcaatgccttgaaagcactttttaacattctcctaacaaaatttgagagaagaaaaatagtataatggctagtggctttg |
40607219 |
T |
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| Q |
111 |
catgtatgtcacgacgcatctatacacattgaaactcttttgtctttgtcgaatatactttgctttgttgaatttttagtactggtctcatttcttgatc |
210 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40607218 |
catgtatgtcacgacgcatctatagacattgaaactcttttgtcttggtcgaatatactttgctttgttgaatttttagtactggtctcctttcttgatc |
40607119 |
T |
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| Q |
211 |
tcttcatcatcattcaccaactcttctg |
238 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
40607118 |
tcttcatcatcattcaccaactcttctg |
40607091 |
T |
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