View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21126_low_2 (Length: 524)
Name: NF21126_low_2
Description: NF21126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21126_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 7e-81; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 11 - 218
Target Start/End: Complemental strand, 14406510 - 14406303
Alignment:
| Q |
11 |
cacagacagccaattggattgctttactattttaaacttgcacatccttcgttgaagagtgtcacatctgtcaaatgacacctaaaaagctagaaatttg |
110 |
Q |
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| T |
14406510 |
cacagacagccaattggattgctttactattttaaaattgcacgtccttcgttgaagagtgtcacatctgtcaaatgacacct-aaaagctagaaatttg |
14406412 |
T |
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| Q |
111 |
aaatttcttccttactctatgcaatgtgaatatcaaattggttcttaac-nnnnnnnnaaaattttgcaagttggtcccaattttttaaaactttcaaac |
209 |
Q |
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| T |
14406411 |
aaatttcttccttactctatacaatgtgaatatcaaattggttcttaactttttttttaaaattttgcaagttggtcccaattttttaaaactttcaaac |
14406312 |
T |
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| Q |
210 |
tgaccccta |
218 |
Q |
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| T |
14406311 |
taaccccta |
14406303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 273 - 351
Target Start/End: Complemental strand, 14406248 - 14406170
Alignment:
| Q |
273 |
agtacctatttttcaaatttcaagtatgactcaaaacttttaaaatttataaaagcaacccaaaaatgttaacaataca |
351 |
Q |
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| T |
14406248 |
agtacctatttttcaaatttcaagtatgactcaaaacttttaaaatttataaaggcaacccaaaaatgttaacaataca |
14406170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 434 - 509
Target Start/End: Complemental strand, 14406087 - 14406012
Alignment:
| Q |
434 |
tttccaatgacttcatacaaacacgcctcatgtcatccccgaaagatttcctttggtgtgtcgacaaagtgacaaa |
509 |
Q |
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| T |
14406087 |
tttccaattacttcatccaaacacgcctcatgtcatcaagaaaagatttcctttagtgtgtagacaaagtgacaaa |
14406012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 349
Target Start/End: Complemental strand, 33977710 - 33977643
Alignment:
| Q |
282 |
ttttcaaatttcaagtatgactcaaaacttttaaaatttataaaagcaacccaaaaatgttaacaata |
349 |
Q |
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| T |
33977710 |
ttttcaattttcaagtttgacccataacatttaaattttataaaaatagcccaaaaatgttaacaata |
33977643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 111 - 153
Target Start/End: Complemental strand, 14137369 - 14137327
Alignment:
| Q |
111 |
aaatttcttccttactctatgcaatgtgaatatcaaattggtt |
153 |
Q |
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| T |
14137369 |
aaatttcttcattactctatacaatgtgaatctcaaattggtt |
14137327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 30139747 - 30139695
Alignment:
| Q |
105 |
aatttgaaatttcttccttactctatgcaatgtgaatatcaaattggttctta |
157 |
Q |
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| T |
30139747 |
aattttaaattgcttccttactctatacaatgtgaatattaaattggttctta |
30139695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 214
Target Start/End: Complemental strand, 26252125 - 26252086
Alignment:
| Q |
175 |
tgcaagttggtcccaattttttaaaactttcaaactgacc |
214 |
Q |
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| T |
26252125 |
tgcaagttggtcccaatttttttaaacttccaaactgacc |
26252086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 281 - 348
Target Start/End: Original strand, 5900806 - 5900873
Alignment:
| Q |
281 |
tttttcaaatttcaagtatgactcaaaacttttaaaatttataaaagcaacccaaaaatgttaacaat |
348 |
Q |
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| T |
5900806 |
tttttccaatttcaaaattgacccaaaacttttaaaatttataaatgtagcccaaaaatgttaacaat |
5900873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 305 - 348
Target Start/End: Original strand, 3271347 - 3271390
Alignment:
| Q |
305 |
aaaacttttaaaatttataaaagcaacccaaaaatgttaacaat |
348 |
Q |
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| T |
3271347 |
aaaacttttaaaatttataaaagcaacccaaaaatattcacaat |
3271390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 157
Target Start/End: Original strand, 41311746 - 41311799
Alignment:
| Q |
103 |
gaaatttgaaatttcttccttactctatgcaatgtgaatatcaaattggttctta |
157 |
Q |
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| T |
41311746 |
gaaatttgaaattccttctttactcaatacaatgtgaat-tcaaattggttctta |
41311799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 34660308 - 34660261
Alignment:
| Q |
102 |
agaaatttgaaatttcttccttactctatgcaatgtgaatatcaaattg |
150 |
Q |
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| T |
34660308 |
agaaattt-aaatttcttccttactctaaacaatgtgaatctcaaattg |
34660261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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