View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21126_low_8 (Length: 255)

Name: NF21126_low_8
Description: NF21126
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21126_low_8
NF21126_low_8
[»] chr8 (9 HSPs)
chr8 (89-187)||(16871397-16871495)
chr8 (89-187)||(458910-459010)
chr8 (187-248)||(16399252-16399313)
chr8 (99-187)||(3759018-3759106)
chr8 (122-187)||(37929302-37929367)
chr8 (156-187)||(7143411-7143442)
chr8 (157-187)||(44222939-44222969)
chr8 (122-187)||(33283014-33283079)
chr8 (147-187)||(4784911-4784951)
[»] chr1 (5 HSPs)
chr1 (89-187)||(33135938-33136036)
chr1 (115-193)||(22582990-22583068)
chr1 (93-187)||(38273919-38274013)
chr1 (120-187)||(25530240-25530307)
chr1 (155-192)||(46732146-46732183)
[»] chr4 (11 HSPs)
chr4 (93-187)||(25197713-25197807)
chr4 (90-187)||(16584590-16584687)
chr4 (93-187)||(297445-297539)
chr4 (108-187)||(39959164-39959242)
chr4 (120-187)||(45680074-45680141)
chr4 (122-187)||(53650275-53650340)
chr4 (147-187)||(5761209-5761249)
chr4 (187-242)||(792719-792774)
chr4 (156-187)||(22653519-22653550)
chr4 (147-187)||(5727346-5727386)
chr4 (155-187)||(10418945-10418977)
[»] chr7 (11 HSPs)
chr7 (187-248)||(22849044-22849105)
chr7 (89-175)||(41216050-41216136)
chr7 (120-186)||(12092872-12092938)
chr7 (105-187)||(13636670-13636752)
chr7 (105-187)||(13697859-13697941)
chr7 (122-187)||(38154100-38154165)
chr7 (133-187)||(14315223-14315277)
chr7 (122-187)||(41529585-41529650)
chr7 (120-187)||(1279300-1279367)
chr7 (157-187)||(23710312-23710342)
chr7 (155-187)||(18299440-18299472)
[»] scaffold0003 (1 HSPs)
scaffold0003 (93-187)||(291162-291256)
[»] chr5 (7 HSPs)
chr5 (93-183)||(28043165-28043254)
chr5 (120-191)||(11721786-11721857)
chr5 (93-187)||(32097887-32097981)
chr5 (156-187)||(22565401-22565432)
chr5 (146-187)||(18968078-18968119)
chr5 (155-191)||(22580379-22580415)
chr5 (147-187)||(37536095-37536135)
[»] chr2 (8 HSPs)
chr2 (117-187)||(37120732-37120802)
chr2 (93-187)||(6512308-6512402)
chr2 (93-187)||(20535064-20535157)
chr2 (120-186)||(21563610-21563676)
chr2 (89-147)||(21936480-21936537)
chr2 (129-187)||(34443876-34443934)
chr2 (147-187)||(27009423-27009463)
chr2 (126-187)||(36176478-36176539)
[»] chr3 (8 HSPs)
chr3 (120-197)||(43797142-43797219)
chr3 (89-187)||(51346056-51346154)
chr3 (93-187)||(17641362-17641456)
chr3 (147-187)||(18690541-18690581)
chr3 (124-187)||(3694550-3694613)
chr3 (124-187)||(31050873-31050936)
chr3 (155-187)||(10436423-10436455)
chr3 (147-187)||(18651116-18651156)
[»] chr6 (6 HSPs)
chr6 (187-248)||(30886860-30886921)
chr6 (147-187)||(34715142-34715182)
chr6 (124-187)||(34017832-34017895)
chr6 (123-175)||(17292607-17292659)
chr6 (125-187)||(11012636-11012698)
chr6 (155-187)||(1840687-1840719)
[»] scaffold0027 (1 HSPs)
scaffold0027 (129-187)||(45332-45390)
[»] scaffold0020 (1 HSPs)
scaffold0020 (155-192)||(124178-124215)


Alignment Details
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 89 - 187
Target Start/End: Complemental strand, 16871495 - 16871397
Alignment:
Q  89 gtaaatatgtttgtgactattgttcttttcctggtacactttgtgctaggaggaactttttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||| |||||||| ||||| ||||||    
T  16871495 gtaaatatgtttgtgactattgttctttttctggtacaccttgtgccaggaggaactttttgattgagtaatatatttcattttagtctctttaaaaaa 16871397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 89 - 187
Target Start/End: Complemental strand, 459010 - 458910
Alignment:
Q  89 gtaaatatgtttgtgactattgttcttttcctggtacactttgtgctaggaggaactttttgattgagta--atatattccattttagcctcttcaaaaa 186  Q
    |||||||||||| ||||| || ||||||| ||||||| | ||||||||||| |||||||||||||| |||  |||||||||||||||| |||||||||||    
T  459010 gtaaatatgtttttgactctttttctttttctggtactccttgtgctaggaagaactttttgattgggtaatatatattccattttaggctcttcaaaaa 458911  T
Q  187 a 187  Q
    |    
T  458910 a 458910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 16399313 - 16399252
Alignment:
Q  187 agaaattcaattacataatttttataagtgattaacactcctatgtgaaaacccctttgctt 248  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| |||||    
T  16399313 agaaattcaattacataatttttataaatgattgacactcctatgtgaaaacccctctgctt 16399252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 187
Target Start/End: Original strand, 3759018 - 3759106
Alignment:
Q  99 ttgtgactattgttcttttcctggtacactttgtgctaggaggaactttttgatt-gagtaatatattccattttagcctcttcaaaaaa 187  Q
    |||||||| |||||||||| |||| |||| ||||||||||| ||||| ||||||| | ||||||||||||||||||||||||| ||||||    
T  3759018 ttgtgact-ttgttctttttctggcacaccttgtgctaggaagaactctttgatttgggtaatatattccattttagcctcttaaaaaaa 3759106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 37929302 - 37929367
Alignment:
Q  122 gtacactttgtgctaggaggaactttttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    |||||| |||||||||||   ||||||||| |  ||||||||||||||||||||||||||||||||    
T  37929302 gtacaccttgtgctaggaaagactttttgagttggtaatatattccattttagcctcttcaaaaaa 37929367  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 187
Target Start/End: Complemental strand, 7143442 - 7143411
Alignment:
Q  156 gtaatatattccattttagcctcttcaaaaaa 187  Q
    ||||||||||||||||||||||||||||||||    
T  7143442 gtaatatattccattttagcctcttcaaaaaa 7143411  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 187
Target Start/End: Complemental strand, 44222969 - 44222939
Alignment:
Q  157 taatatattccattttagcctcttcaaaaaa 187  Q
    |||||||||||||||||||||||||||||||    
T  44222969 taatatattccattttagcctcttcaaaaaa 44222939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 33283014 - 33283079
Alignment:
Q  122 gtacactttgtgctaggaggaactttttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    |||||| |||| |||||| || || |||||||   ||||||||| |||||||||||||||||||||    
T  33283014 gtacaccttgtactaggaagacctctttgatttgataatatatttcattttagcctcttcaaaaaa 33283079  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 4784911 - 4784951
Alignment:
Q  147 tttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    |||||||  ||||||||||||||||||||||||| ||||||    
T  4784911 tttgatttggtaatatattccattttagcctcttaaaaaaa 4784951  T

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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 89 - 187
Target Start/End: Complemental strand, 33136036 - 33135938
Alignment:
Q  89 gtaaatatgtttgtgactattgttcttttcctggtacactttgtgctaggaggaactttttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||  ||||||||||||    
T  33136036 gtaaatatgtttgtgactcttgttcttttcctggtacaccttgtgctaggaggaactttatgattgagtaatatatttcattttaatctcttcaaaaaa 33135938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 115 - 193
Target Start/End: Complemental strand, 22583068 - 22582990
Alignment:
Q  115 tttcctggtacactttgtgctaggaggaactttttgattgagtaatatattccattttagcctcttcaaaaaagaaatt 193  Q
    |||| |||||||||||||||||||| |||| ||||||||  ||||||||||||||||||||||||| |||||| |||||    
T  22583068 tttcttggtacactttgtgctaggaagaacattttgattttgtaatatattccattttagcctctttaaaaaaaaaatt 22582990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 93 - 187
Target Start/End: Complemental strand, 38274013 - 38273919
Alignment:
Q  93 atatgtttgtgactattgttcttttcctggtacactttgtgctaggaggaactttttgatt-gagtaatatattccattttagcctcttcaaaaaa 187  Q
    ||||| |||||||| |||||||||| |||| |||| ||||||||| | |||| |||||||| | |||||||||| |||||||| ||||||||||||    
T  38274013 atatgattgtgact-ttgttctttttctggcacaccttgtgctagcaagaacattttgatttgggtaatatatttcattttagtctcttcaaaaaa 38273919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 187
Target Start/End: Original strand, 25530240 - 25530307
Alignment:
Q  120 tggtacactttgtgctaggaggaactttttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    |||| ||| ||||||||||| || | ||||||||  |||||||||| |||||||||||||||||||||    
T  25530240 tggtgcaccttgtgctaggaagaccattttgatttggtaatatatttcattttagcctcttcaaaaaa 25530307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 46732146 - 46732183
Alignment:
Q  155 agtaatatattccattttagcctcttcaaaaaagaaat 192  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  46732146 agtaatatattccattttagcttcttcaaaaaaaaaat 46732183  T

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Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 93 - 187
Target Start/End: Original strand, 25197713 - 25197807
Alignment:
Q  93 atatgtttgtgactattgttcttttcctggtacactttgtgctaggaggaactttttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||| |||| ||||||||| |||||||||| |||||||||||||||||||||    
T  25197713 atatgtttgtgacttttgttcttttcctggtacaccttgtgctaggaagaacattttgattgggtaatatatttcattttagcctcttcaaaaaa 25197807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 90 - 187
Target Start/End: Original strand, 16584590 - 16584687
Alignment:
Q  90 taaatatgtttgtgactattgttcttttcctggtacactttgtgctaggaggaactttttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    ||||||||||||||||  | |||||| ||||||||||| ||||||||||| ||||||||||||| ||||||||||| ||||||||||| || ||||||    
T  16584590 taaatatgtttgtgaccttagttcttatcctggtacaccttgtgctaggaagaactttttgattaagtaatatatttcattttagcctattaaaaaaa 16584687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 93 - 187
Target Start/End: Original strand, 297445 - 297539
Alignment:
Q  93 atatgtttgtgactattgttcttttcctggtacactttgtgctaggaggaactttttga-ttgagtaatatattccattttagcctcttcaaaaaa 187  Q
    |||||||||||||| |||||||||||||| ||||| ||||||||| | ||||| ||||| |||  ||||||||| ||||||||| |||| ||||||    
T  297445 atatgtttgtgact-ttgttcttttcctgatacaccttgtgctagaaagaactctttgatttggataatatatttcattttagcttcttaaaaaaa 297539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 187
Target Start/End: Original strand, 39959164 - 39959242
Alignment:
Q  108 ttgttcttttcctggtacactttgtgctaggaggaactttttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    ||||||||||| ||||| || ||||| ||||| | || |||||||||||||||||||| ||||||| |||||| ||||||    
T  39959164 ttgttcttttc-tggtataccttgtgttaggaaggacattttgattgagtaatatatttcattttaacctctttaaaaaa 39959242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 187
Target Start/End: Complemental strand, 45680141 - 45680074
Alignment:
Q  120 tggtacactttgtgctaggaggaactttttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    |||||||| ||||||||||| |||| ||||||||   ||||||||||||||||| | |||||||||||    
T  45680141 tggtacaccttgtgctaggaagaacattttgatttgataatatattccattttaacttcttcaaaaaa 45680074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 187
Target Start/End: Complemental strand, 53650340 - 53650275
Alignment:
Q  122 gtacactttgtgctaggaggaactttttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    |||||| ||||||||||| ||||  |||||||| ||| |||||||||||||| |||||| ||||||    
T  53650340 gtacaccttgtgctaggaagaacgctttgattgtgtactatattccattttaacctcttaaaaaaa 53650275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 5761209 - 5761249
Alignment:
Q  147 tttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    ||||||| |||||||||||||||||||||||||| ||||||    
T  5761209 tttgatttagtaatatattccattttagcctcttaaaaaaa 5761249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 242
Target Start/End: Original strand, 792719 - 792774
Alignment:
Q  187 agaaattcaattacataatttttataagtgattaacactcctatgtgaaaacccct 242  Q
    ||||||||||||||| || |||||||| |||||||||| || ||||||||| ||||    
T  792719 agaaattcaattacacaacttttataaatgattaacacccccatgtgaaaaaccct 792774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 187
Target Start/End: Original strand, 22653519 - 22653550
Alignment:
Q  156 gtaatatattccattttagcctcttcaaaaaa 187  Q
    ||||||||||||||||||||||||||||||||    
T  22653519 gtaatatattccattttagcctcttcaaaaaa 22653550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 5727346 - 5727386
Alignment:
Q  147 tttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    ||||||| ||||||||||||||||||| |||||| ||||||    
T  5727346 tttgatttagtaatatattccattttaacctcttaaaaaaa 5727386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 10418977 - 10418945
Alignment:
Q  155 agtaatatattccattttagcctcttcaaaaaa 187  Q
    ||||||||||||||||||||| |||||||||||    
T  10418977 agtaatatattccattttagcttcttcaaaaaa 10418945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 22849044 - 22849105
Alignment:
Q  187 agaaattcaattacataatttttataagtgattaacactcctatgtgaaaacccctttgctt 248  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||    
T  22849044 agaaattcaattacataatatttataaatgattaacactcctatgtgaaaatccctttgctt 22849105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 89 - 175
Target Start/End: Complemental strand, 41216136 - 41216050
Alignment:
Q  89 gtaaatatgtttgtgactattgttcttttcctggtacactttgtgctaggaggaactttttgattgagtaatatattccattttagc 175  Q
    |||||||||||||||||| | |||||| ||||||||| | || |||||||| ||||||||||||| | ||||||||| |||||||||    
T  41216136 gtaaatatgtttgtgactttagttcttatcctggtacgccttatgctaggaagaactttttgattaactaatatatttcattttagc 41216050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 186
Target Start/End: Original strand, 12092872 - 12092938
Alignment:
Q  120 tggtacactttgtgctaggaggaactttttgattgagtaatatattccattttagcctcttcaaaaa 186  Q
    |||||||| ||||||||||| |||| ||||||||  |||||||||||||||||||||| || |||||    
T  12092872 tggtacaccttgtgctaggaagaacattttgatttggtaatatattccattttagcctattaaaaaa 12092938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 187
Target Start/End: Complemental strand, 13636752 - 13636670
Alignment:
Q  105 ctattgttcttttcctggtacactttgtgctaggaggaactttttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    ||||||||| |||| |||||||| |||| |||||| |||| ||||||||  |||||||||  |||||||||||||| ||||||    
T  13636752 ctattgttcctttcttggtacaccttgtactaggaagaacattttgatttggtaatatatctcattttagcctcttaaaaaaa 13636670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 105 - 187
Target Start/End: Complemental strand, 13697941 - 13697859
Alignment:
Q  105 ctattgttcttttcctggtacactttgtgctaggaggaactttttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    ||||||||| |||| |||||||| |||| |||||| |||| ||||||||  |||||||||  |||||||||||||| ||||||    
T  13697941 ctattgttcctttcttggtacaccttgtactaggaagaacattttgatttggtaatatatctcattttagcctcttaaaaaaa 13697859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 38154100 - 38154165
Alignment:
Q  122 gtacactttgtgctaggaggaactttttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    |||||| |||||||||||   ||||||||| |  ||||||||||||||||||||||||||||||||    
T  38154100 gtacaccttgtgctaggaaagactttttgagttggtaatatattccattttagcctcttcaaaaaa 38154165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 14315277 - 14315223
Alignment:
Q  133 gctaggaggaactttttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    ||||||| |||| |||||||||||||||||||| ||||||| |||||| ||||||    
T  14315277 gctaggaagaaccttttgattgagtaatatatttcattttaacctcttaaaaaaa 14315223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 41529585 - 41529650
Alignment:
Q  122 gtacactttgtgctaggaggaactttttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    |||||| ||||||||||| | |||  ||||||  |||||||||||||||||||| |||||||||||    
T  41529585 gtacaccttgtgctaggaaggactcattgatttcgtaatatattccattttagcttcttcaaaaaa 41529650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 187
Target Start/End: Original strand, 1279300 - 1279367
Alignment:
Q  120 tggtacactttgtgctaggaggaactttttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    |||||||| ||||| ||||| | || ||||||||  |||||||||| ||||||| |||||||||||||    
T  1279300 tggtacaccttgtgttaggaaggacattttgatttggtaatatatttcattttaacctcttcaaaaaa 1279367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 187
Target Start/End: Complemental strand, 23710342 - 23710312
Alignment:
Q  157 taatatattccattttagcctcttcaaaaaa 187  Q
    |||||||||||||||||||||||||||||||    
T  23710342 taatatattccattttagcctcttcaaaaaa 23710312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 18299472 - 18299440
Alignment:
Q  155 agtaatatattccattttagcctcttcaaaaaa 187  Q
    ||||||||||||||||||||| |||||||||||    
T  18299472 agtaatatattccattttagcttcttcaaaaaa 18299440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 187
Target Start/End: Original strand, 291162 - 291256
Alignment:
Q  93 atatgtttgtgactattgttcttttcctggtacactttgtgctaggaggaactttttgatt-gagtaatatattccattttagcctcttcaaaaaa 187  Q
    |||||||||| ||| ||||||||||||||  |||| ||||||||||| ||||| ||||||| ||||||||||||||||||||| ||||| ||||||    
T  291162 atatgtttgtaact-ttgttcttttcctgacacaccttgtgctaggaagaactctttgatttgagtaatatattccattttagtctcttaaaaaaa 291256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 93 - 183
Target Start/End: Original strand, 28043165 - 28043254
Alignment:
Q  93 atatgtttgtgactattgttcttttcctggtacactttgtgctaggaggaactttttgattgagtaatatattccattttagcctcttcaa 183  Q
    |||| ||||||||| |||||||||||||| ||||| |||| |||||| ||||  |||||||| |||||||||||||||||| |||||||||    
T  28043165 atatatttgtgact-ttgttcttttcctgatacaccttgtactaggaagaacactttgattgggtaatatattccattttaacctcttcaa 28043254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 11721786 - 11721857
Alignment:
Q  120 tggtacactttgtgctaggaggaactttttgattgagtaatatattccattttagcctcttcaaaaaagaaa 191  Q
    |||||||| |||||||||||  ||| ||||||||   |||||||||| ||||||||||||||||||||||||    
T  11721786 tggtacaccttgtgctaggaaaaacattttgatttgataatatattctattttagcctcttcaaaaaagaaa 11721857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 187
Target Start/End: Original strand, 32097887 - 32097981
Alignment:
Q  93 atatgtttgtgactattgttcttttcctggtacactttgtgctaggaggaactttttgattgag-taatatattccattttagcctcttcaaaaaa 187  Q
    |||||||||||||| |||||||||||||   |||| |||| |||||| ||||| ||||||| || ||||||||| | ||||| |||||||||||||    
T  32097887 atatgtttgtgact-ttgttcttttcctaacacaccttgtactaggaagaactctttgatttaggtaatatatttccttttaacctcttcaaaaaa 32097981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 187
Target Start/End: Original strand, 22565401 - 22565432
Alignment:
Q  156 gtaatatattccattttagcctcttcaaaaaa 187  Q
    ||||||||||||||||||||||||||||||||    
T  22565401 gtaatatattccattttagcctcttcaaaaaa 22565432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 187
Target Start/End: Original strand, 18968078 - 18968119
Alignment:
Q  146 ttttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    ||||||||  ||||||||||||||||||||||||| ||||||    
T  18968078 ttttgattttgtaatatattccattttagcctcttaaaaaaa 18968119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 22580415 - 22580379
Alignment:
Q  155 agtaatatattccattttagcctcttcaaaaaagaaa 191  Q
    ||||||||||||||||||| | |||||||||||||||    
T  22580415 agtaatatattccattttaacttcttcaaaaaagaaa 22580379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 37536095 - 37536135
Alignment:
Q  147 tttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    |||||||  |||||||||||||||||||| |||||||||||    
T  37536095 tttgatttcgtaatatattccattttagcttcttcaaaaaa 37536135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 117 - 187
Target Start/End: Complemental strand, 37120802 - 37120732
Alignment:
Q  117 tcctggtacactttgtgctaggaggaactttttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    ||||||||||  ||||||||||  ||||| ||||||| |||||||||||||||||||||||||||||||||    
T  37120802 tcctggtacatcttgtgctaggtagaactctttgatttagtaatatattccattttagcctcttcaaaaaa 37120732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 187
Target Start/End: Complemental strand, 6512402 - 6512308
Alignment:
Q  93 atatgtttgtgactattgttcttttcctggtacactttgtgctaggaggaactttttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    |||||||||||| | |||||||||| || |||||| || |  ||||| |||| ||||||||| |||||||||||||||||| |||||| ||||||    
T  6512402 atatgtttgtgattcttgttctttttctagtacaccttatattaggaagaaccttttgattgggtaatatattccattttaacctcttaaaaaaa 6512308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 187
Target Start/End: Complemental strand, 20535157 - 20535064
Alignment:
Q  93 atatgtttgtgactattgttcttttcctggtacactttgtgctaggaggaactttttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    |||||||||||| | ||||||||||||| |||||| || | |||||| |||  |||||||||||||||||||| |||||||| ||||| ||||||    
T  20535157 atatgtttgtgagt-ttgttcttttcctagtacaccttatactaggaagaatattttgattgagtaatatatttcattttagtctcttaaaaaaa 20535064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 186
Target Start/End: Original strand, 21563610 - 21563676
Alignment:
Q  120 tggtacactttgtgctaggaggaactttttgattgagtaatatattccattttagcctcttcaaaaa 186  Q
    |||||||| ||||| ||||| |||| |||||||| |||| |||||||||||||||||||||||||||    
T  21563610 tggtacaccttgtgttaggaagaacattttgatttagtattatattccattttagcctcttcaaaaa 21563676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 147
Target Start/End: Complemental strand, 21936537 - 21936480
Alignment:
Q  89 gtaaatatgtttgtgactattgttcttttcctggtacactttgtgctaggaggaacttt 147  Q
    |||||||||| ||||||| |||||||||||||||||||| ||||| |||||||||||||    
T  21936537 gtaaatatgtatgtgact-ttgttcttttcctggtacaccttgtgttaggaggaacttt 21936480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 34443876 - 34443934
Alignment:
Q  129 ttgtgctaggaggaactttttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    |||||||||||  ||| ||||||||  ||||||||||||||||||||||||| ||||||    
T  34443876 ttgtgctaggaaaaacattttgatttggtaatatattccattttagcctctttaaaaaa 34443934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 27009423 - 27009463
Alignment:
Q  147 tttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    ||||||| | |||||||||||||||||||||||||||||||    
T  27009423 tttgatttaataatatattccattttagcctcttcaaaaaa 27009463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 36176539 - 36176478
Alignment:
Q  126 actttgtgctaggaggaactttttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    |||||||||||||| ||||  |||||||  |||||||||| ||||||| |||||| ||||||    
T  36176539 actttgtgctaggaagaacactttgatttggtaatatatttcattttaacctcttaaaaaaa 36176478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 43797219 - 43797142
Alignment:
Q  120 tggtacactttgtgctaggaggaactttttgattgagtaatatattccattttagcctcttcaaaaaagaaattcaat 197  Q
    |||||||| ||||||||||| ||||  |||||||  |||||||||||||||||||||||||||||||| ||| |||||    
T  43797219 tggtacaccttgtgctaggaagaacactttgatttggtaatatattccattttagcctcttcaaaaaaaaaaatcaat 43797142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 187
Target Start/End: Complemental strand, 51346154 - 51346056
Alignment:
Q  89 gtaaatatgtttgtgactattgttcttttcctggtacactttgtgctaggaggaactttttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    |||||||||||||||| | | |||||||||||| ||| | ||||  ||||| ||||||||||||||||| || |||| ||||||| |||||| ||||||    
T  51346154 gtaaatatgtttgtgattctagttcttttcctgatacgccttgtattaggaagaactttttgattgagtgatgtatttcattttaacctcttaaaaaaa 51346056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 187
Target Start/End: Complemental strand, 17641456 - 17641362
Alignment:
Q  93 atatgtttgtgactattgttcttttcctggtacactttgtgctaggaggaactttttg-attgagtaatatattccattttagcctcttcaaaaaa 187  Q
    |||||||||||||| || ||||||||||||||||| || |||||||| ||||| ||||  ||| ||||| |||||||||||| | |||| ||||||    
T  17641456 atatgtttgtgact-ttattcttttcctggtacaccttatgctaggaagaactctttgttttgggtaatgtattccattttaacttcttaaaaaaa 17641362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 18690541 - 18690581
Alignment:
Q  147 tttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    ||||||| |||||||||||||||||||||||||| ||||||    
T  18690541 tttgatttagtaatatattccattttagcctcttaaaaaaa 18690581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 187
Target Start/End: Complemental strand, 3694613 - 3694550
Alignment:
Q  124 acactttgtgctaggaggaactttttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    |||| ||||||||||| || ||| |||||   |||||||||| |||||||||||||||||||||    
T  3694613 acaccttgtgctaggaagaccttattgatgtggtaatatatttcattttagcctcttcaaaaaa 3694550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 187
Target Start/End: Original strand, 31050873 - 31050936
Alignment:
Q  124 acactttgtgctaggaggaactttttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    |||| ||||||||||| | || |||||| |  |||||||||| |||||||||||||||||||||    
T  31050873 acaccttgtgctaggaaggacattttgagttggtaatatatttcattttagcctcttcaaaaaa 31050936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 10436455 - 10436423
Alignment:
Q  155 agtaatatattccattttagcctcttcaaaaaa 187  Q
    ||||||||||||||||||||| |||||||||||    
T  10436455 agtaatatattccattttagcttcttcaaaaaa 10436423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 18651116 - 18651156
Alignment:
Q  147 tttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    ||||||| ||||||||||||||||||| |||||| ||||||    
T  18651116 tttgatttagtaatatattccattttaacctcttaaaaaaa 18651156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 187 - 248
Target Start/End: Original strand, 30886860 - 30886921
Alignment:
Q  187 agaaattcaattacataatttttataagtgattaacactcctatgtgaaaacccctttgctt 248  Q
    ||||||||||||||||||| ||||||| |||||||||||||||| |||||| |||| |||||    
T  30886860 agaaattcaattacataatatttataaatgattaacactcctatatgaaaatccctctgctt 30886921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 34715142 - 34715182
Alignment:
Q  147 tttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    ||||||| |||||||||||||||||||||||||||||||||    
T  34715142 tttgatttagtaatatattccattttagcctcttcaaaaaa 34715182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 187
Target Start/End: Complemental strand, 34017895 - 34017832
Alignment:
Q  124 acactttgtgctaggaggaactttttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    ||||||||||||||||   ||| |||||||  |||||||||| |||||||||||||||||||||    
T  34017895 acactttgtgctaggattgactctttgatttggtaatatatttcattttagcctcttcaaaaaa 34017832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 17292659 - 17292607
Alignment:
Q  123 tacactttgtgctaggaggaactttttgattgagtaatatattccattttagc 175  Q
    ||||||||||| ||||| ||||||||||||  ||||||||||| |||||||||    
T  17292659 tacactttgtgttaggaagaactttttgatatagtaatatattacattttagc 17292607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 187
Target Start/End: Original strand, 11012636 - 11012698
Alignment:
Q  125 cactttgtgctaggaggaactttttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    |||||||||||||||   || ||||||||  |||||||||||||||| |||||||| ||||||    
T  11012636 cactttgtgctaggaaacacattttgatttggtaatatattccatttaagcctcttaaaaaaa 11012698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 187
Target Start/End: Original strand, 1840687 - 1840719
Alignment:
Q  155 agtaatatattccattttagcctcttcaaaaaa 187  Q
    ||||||||||||||||||||| |||||||||||    
T  1840687 agtaatatattccattttagcttcttcaaaaaa 1840719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 45332 - 45390
Alignment:
Q  129 ttgtgctaggaggaactttttgattgagtaatatattccattttagcctcttcaaaaaa 187  Q
    ||||| ||||| |||||||||| ||||||||||||||| ||||||| ||||||||||||    
T  45332 ttgtgttaggaagaactttttggttgagtaatatattcaattttagtctcttcaaaaaa 45390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 124215 - 124178
Alignment:
Q  155 agtaatatattccattttagcctcttcaaaaaagaaat 192  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  124215 agtaatatattccattttagcttcttcaaaaaaaaaat 124178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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