View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21127_high_2 (Length: 341)
Name: NF21127_high_2
Description: NF21127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21127_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 34765499 - 34765177
Alignment:
| Q |
1 |
aatattattaataggttcaatttgaaaatctgtaccaaattttcagaagctaacttttttggatttgagctataacagcttatccagttgcatgcctcaa |
100 |
Q |
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| T |
34765499 |
aatattattaataggttcaatttgaaaatctgtaccaaattttcagaagctaacttttttggatttgagctataacagcttatccagttgcatgcctcaa |
34765400 |
T |
|
| Q |
101 |
gagtttggtcatgcaacaagctttacaataagtttgtatttgagctcaaatgaattcacatgtgaaaattattatccgtaaccacaatgagttcattgtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34765399 |
gagtttggtcatgcaacaagctttacaataagtttgtatttgagctcaaatgaattcacatgtgaaaattattatccgtaaccacaatgagttcattgtc |
34765300 |
T |
|
| Q |
201 |
acattcctcgttccaacgcttgatcctctcactctttcaatgcatcaaaccttgaacattgttgttaatatgtactttgaagatatttgatttttggttt |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34765299 |
acattcctcgttccaacacttgatcctctcactctttcaatgcatcaaaccttgaacattgttgttaatatgtactttgaagatatttgatttttggttt |
34765200 |
T |
|
| Q |
301 |
ggaattggctattagaggcaggt |
323 |
Q |
| |
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| T |
34765199 |
ggaattggctattagaggcaggt |
34765177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 160 - 308
Target Start/End: Original strand, 6440469 - 6440616
Alignment:
| Q |
160 |
atgtgaaaattattatccgtaaccacaatgagttcattgtcacattcctcgttccaacgcttgatcctctcactctttcaatgcatcaaaccttgaacat |
259 |
Q |
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|||||||| | |||||| ||||||||||||||||||||||||||||||||||||||| ||| || |||||||| ||||||| | ||| ||||||| |
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| T |
6440469 |
atgtgaaattcattatcgttaaccacaatgagttcattgtcacattcctcgttccaacatttggtcgtctcactccttcaatgtagcaagtattgaacac |
6440568 |
T |
|
| Q |
260 |
tgttgttaatatgtactttgaagatatttgatttttggtttggaattgg |
308 |
Q |
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| T |
6440569 |
tattg-taatgtgcccttcgaagatatttgatttttggtttggaattgg |
6440616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 44015408 - 44015301
Alignment:
| Q |
44 |
cagaagctaacttttttggatttgagctataacagcttatccagttgcatgcctcaagagtttggtcatgcaacaagctttacaataagtttgtatttga |
143 |
Q |
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|||||||||||| ||||||||||||| ||||| |||||||| || |||| |||| |||| ||||||||| |||||| | ||||| |||||| |||||| |
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| T |
44015408 |
cagaagctaactcttttggatttgagttataatagcttatctggtagcatacctccagagattggtcatgttacaagcctaacaatcagtttggatttga |
44015309 |
T |
|
| Q |
144 |
gctcaaat |
151 |
Q |
| |
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|||||||| |
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| T |
44015308 |
gctcaaat |
44015301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 258
Target Start/End: Complemental strand, 895501 - 895426
Alignment:
| Q |
183 |
cacaatgagttcattgtcacattcctcgttccaacgcttgatcctctcactctttcaatgcatcaaaccttgaaca |
258 |
Q |
| |
|
|||||||| ||||||||||||||| || ||||||| ||| |||||| |||| ||||||||| ||| |||||||| |
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| T |
895501 |
cacaatgaattcattgtcacattcatcattccaacactttctcctcttactccttcaatgcaacaagtcttgaaca |
895426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 258
Target Start/End: Original strand, 905139 - 905214
Alignment:
| Q |
183 |
cacaatgagttcattgtcacattcctcgttccaacgcttgatcctctcactctttcaatgcatcaaaccttgaaca |
258 |
Q |
| |
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|||||||| ||||||||||||||| || ||||||| ||| |||||| |||| ||||||||| ||| |||||||| |
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| T |
905139 |
cacaatgaattcattgtcacattcatcattccaacactttgtcctcttactccttcaatgcaacaagtcttgaaca |
905214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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