View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21127_high_3 (Length: 304)
Name: NF21127_high_3
Description: NF21127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21127_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 290
Target Start/End: Complemental strand, 34294744 - 34294470
Alignment:
| Q |
16 |
tactttatgaactatagataacaatagggcttctaacaatgtaacgagggtttctccaaataagtgaacctgatacaattttcatgcttgccatagattt |
115 |
Q |
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| T |
34294744 |
tactttatgaactatagataacaatagggcttctaacaatgtaacgagggtttctccaaataagtgaacctgatacaattttcatgcttgccatagattt |
34294645 |
T |
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| Q |
116 |
tgctttcacaactaccttgaagttctttttctgcagggtatgatagaaaatcaagctagtaggcttcactgtaatttccacaccttttggtgatttaatg |
215 |
Q |
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| T |
34294644 |
tgctttcacaactaccttgaagttctttttctgcagggtatgatagaaaatcaagctagtaggcttcactgtaatttccacaccttttggtgatttaatg |
34294545 |
T |
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| Q |
216 |
gtagcattatacattgttggtccaggacctacattggtaactcttctcctgaaaactcctattgttgattctgtg |
290 |
Q |
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| T |
34294544 |
gtagcattatacattgttggtccaggacctacattggtaactcttctcctgaaaactcctattgttgattctgtg |
34294470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 17 - 282
Target Start/End: Original strand, 12725696 - 12725961
Alignment:
| Q |
17 |
actttatgaactatagataacaatagggcttctaacaatgtaacgagggtttctccaaataagtgaacctgatacaattttcatgcttgccatagatttt |
116 |
Q |
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| T |
12725696 |
actttacggactgtagataacaatagggcttctaacgatataacgagggcttctccaaataagggaagctgatacaattttcatacttgccatagatttt |
12725795 |
T |
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| Q |
117 |
gctttcacaactaccttgaagttctttttctgcagggtatgatagaaaatcaagctagtaggcttcactgtaatttccacaccttttggtgatttaatgg |
216 |
Q |
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| T |
12725796 |
gctttcacaactaccttgaagctcctcttttgcaaggtgtgagagaaaatgagactagtaggcttcactgtaatttccactccttttggagatttgatgg |
12725895 |
T |
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| Q |
217 |
tagcattatacattgttggtccaggacctacattggtaactcttctcctgaaaactcctattgttg |
282 |
Q |
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| T |
12725896 |
tggcattaaagatggtttgtccaggacctacattggtaactcttctcctgaaaactcctattgttg |
12725961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 274
Target Start/End: Complemental strand, 28522100 - 28522001
Alignment:
| Q |
175 |
taggcttcactgtaatttccacaccttttggtgatttaatggtagcattatacattgttggtccaggacctacattggtaactcttctcctgaaaactcc |
274 |
Q |
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||||||||||||| ||||| || |||||||||||| |||| |||||||| || | |||| |||||||||||||||| ||| |||| || |||||||| |
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| T |
28522100 |
taggcttcactgtgatttcaactccttttggtgatctaatagtagcattgtaggtaattggaacaggacctacattggtcactgttcttctaaaaactcc |
28522001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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