View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21127_low_11 (Length: 201)

Name: NF21127_low_11
Description: NF21127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21127_low_11
NF21127_low_11
[»] chr1 (2 HSPs)
chr1 (20-185)||(1718061-1718226)
chr1 (82-128)||(38483819-38483865)
[»] chr3 (12 HSPs)
chr3 (75-179)||(26647851-26647955)
chr3 (78-173)||(26654001-26654096)
chr3 (75-149)||(20033501-20033575)
chr3 (76-152)||(19951998-19952074)
chr3 (82-173)||(20015375-20015466)
chr3 (83-185)||(20007447-20007549)
chr3 (97-151)||(19849871-19849925)
chr3 (75-133)||(20006421-20006479)
chr3 (75-152)||(20035770-20035847)
chr3 (83-152)||(19813157-19813226)
chr3 (75-139)||(19956971-19957035)
chr3 (34-73)||(26648113-26648152)
[»] chr5 (3 HSPs)
chr5 (75-159)||(26354094-26354178)
chr5 (82-152)||(9815908-9815978)
chr5 (83-133)||(27472660-27472710)
[»] chr8 (1 HSPs)
chr8 (75-149)||(22685507-22685581)
[»] chr7 (2 HSPs)
chr7 (87-151)||(12582137-12582201)
chr7 (87-151)||(12521888-12521952)
[»] scaffold0038 (1 HSPs)
scaffold0038 (84-123)||(19562-19601)
[»] chr6 (1 HSPs)
chr6 (84-123)||(28219064-28219103)


Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 1718226 - 1718061
Alignment:
Q  20 gaacattggttatttaaatgcttagattcatggattatgccaccacatttgtacctaagagtgtcaacaagattgggaggaaatccaggtggaacaccaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1718226 gaacattggttatttaaatgcttagattcatggattatgccaccacacttgtacctaagagtgtcaacaagattgggaggaaatccaggtggaacaccaa 1718127  T
Q  120 catcattaccacttttgttagcttttcctacatcagctctaggtttcgttgaacatgcacgtctct 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1718126 catcattaccacttttgttagcttttcctacatcagctctaggtttcgttgaacatgcacatctct 1718061  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 38483865 - 38483819
Alignment:
Q  82 gtcaacaagattgggaggaaatccaggtggaacaccaacatcattac 128  Q
    |||||||||||  ||||||||| ||||||||||||||||||||||||    
T  38483865 gtcaacaagatctggaggaaattcaggtggaacaccaacatcattac 38483819  T

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Target: chr3 (Bit Score: 65; Significance: 9e-29; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 75 - 179
Target Start/End: Complemental strand, 26647955 - 26647851
Alignment:
Q  75 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctctaggtttcgttgaaca 174  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||| |||||||||||  | ||||| ||||| ||||||     
T  26647955 taagagtgtcaacaagattgggaggaaaaccagggggaacaccaacatcattaccacttatgttatcttttcctacacaaactctatgtttccttgaact 26647856  T
Q  175 tgcac 179  Q
    |||||    
T  26647855 tgcac 26647851  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 78 - 173
Target Start/End: Complemental strand, 26654096 - 26654001
Alignment:
Q  78 gagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctctaggtttcgttgaac 173  Q
    ||||||||||||||||||||||||||||||||||||||| || |||   |||||||||| ||||||| ||||||| ||||||||||||| ||||||    
T  26654096 gagtgtcaacaagattgggaggaaatccaggtggaacactaaaatcgacaccacttttgctagctttccctacatgagctctaggtttccttgaac 26654001  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 75 - 149
Target Start/End: Original strand, 20033501 - 20033575
Alignment:
Q  75 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttccta 149  Q
    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||| |||||| |||||||    
T  20033501 taagagtgtcaacaagattgggaggaaatccaggtgcaacaccatcatcattactactttcgttagcatttccta 20033575  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 76 - 152
Target Start/End: Complemental strand, 19952074 - 19951998
Alignment:
Q  76 aagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacat 152  Q
    |||||| ||||||  ||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  19952074 aagagtttcaacacaattggtaggaaatccaggtggaacaccaacaacattaccacttatgttagcttttcctacat 19951998  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 20015375 - 20015466
Alignment:
Q  82 gtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctctaggtttcgttgaac 173  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||  ||| |||||| |||||||| || || |||| ||||| ||||||    
T  20015375 gtcaacaagattgggacaaaatccaggtggaacaccaacatcattactgcttctgttagtttttcctagatgaggtctatgtttccttgaac 20015466  T

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Target: chr3; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 83 - 185
Target Start/End: Original strand, 20007447 - 20007549
Alignment:
Q  83 tcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctctaggtttcgttgaacatgcacgtc 182  Q
    |||||||||||||||||||||||||||||||||||||||||| | | |||| |||||| || |||||||| || |||| || || |||||  ||||| ||    
T  20007447 tcaacaagattgggaggaaatccaggtggaacaccaacatcaatccaacttctgttagattgtcctacatgagatctatgtctccttgaaattgcacttc 20007546  T
Q  183 tct 185  Q
    |||    
T  20007547 tct 20007549  T

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Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 151
Target Start/End: Complemental strand, 19849925 - 19849871
Alignment:
Q  97 aggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctaca 151  Q
    |||||||||| |||||| ||||||||||||||||||| |||||||||||||||||    
T  19849925 aggaaatccaagtggaaaaccaacatcattaccacttctgttagcttttcctaca 19849871  T

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Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 133
Target Start/End: Original strand, 20006421 - 20006479
Alignment:
Q  75 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccactt 133  Q
    |||||||| |||||||||||||||||||||||  |||||||||||||||| ||||||||    
T  20006421 taagagtgccaacaagattgggaggaaatccatctggaacaccaacatcaataccactt 20006479  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 152
Target Start/End: Original strand, 20035770 - 20035847
Alignment:
Q  75 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacat 152  Q
    ||||||| |||||||||||||||| |||||||||  |||||| ||| ||| |||||||||||||   |||||||||||    
T  20035770 taagagtatcaacaagattgggagaaaatccaggctgaacacaaacttcaataccacttttgtttaattttcctacat 20035847  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 19813226 - 19813157
Alignment:
Q  83 tcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacat 152  Q
    ||||||||||||||||||||| ||||||||||| || || || |||||||| ||| |  |||||||||||    
T  19813226 tcaacaagattgggaggaaattcaggtggaacagcagcaccaataccacttctgtcaaattttcctacat 19813157  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 139
Target Start/End: Complemental strand, 19957035 - 19956971
Alignment:
Q  75 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgtta 139  Q
    ||||||| |||||||||||||||| |||||||||| |||||| ||| ||  |||||||| |||||    
T  19957035 taagagtatcaacaagattgggagaaaatccaggttgaacacaaacctccataccacttctgtta 19956971  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 73
Target Start/End: Complemental strand, 26648152 - 26648113
Alignment:
Q  34 taaatgcttagattcatggattatgccaccacatttgtac 73  Q
    |||||||||||||||||||||| |||||||||| ||||||    
T  26648152 taaatgcttagattcatggattttgccaccacacttgtac 26648113  T

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Target: chr5 (Bit Score: 57; Significance: 5e-24; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 75 - 159
Target Start/End: Original strand, 26354094 - 26354178
Alignment:
Q  75 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacatcagctct 159  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||| |||||| |||| ||||||    
T  26354094 taagaatgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaatacttctgttagtttttccaacatgagctct 26354178  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 9815978 - 9815908
Alignment:
Q  82 gtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctacat 152  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||| |||| ||| |  |||||||||||    
T  9815978 gtcaacaagattgggaggaaattcaggtggaaaaccaacatcattacaacttctgtcaatttttcctacat 9815908  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 27472710 - 27472660
Alignment:
Q  83 tcaacaagattgggaggaaatccaggtggaacaccaacatcattaccactt 133  Q
    ||||||| ||||  ||| |||||| ||||||||||||||||||||||||||    
T  27472710 tcaacaacattgaaagggaatccaagtggaacaccaacatcattaccactt 27472660  T

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Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 75 - 149
Target Start/End: Original strand, 22685507 - 22685581
Alignment:
Q  75 taagagtgtcaacaagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttccta 149  Q
    |||| |||| ||||||||||  || |||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  22685507 taagtgtgttaacaagattgaaagaaaatccaggtggaacaccaacatcattaccacttctgttagctattccta 22685581  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 151
Target Start/End: Complemental strand, 12582201 - 12582137
Alignment:
Q  87 caagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctaca 151  Q
    ||||||||||| |||||| |||  || ||||||||| | |||| |||||||||||||||||||||    
T  12582201 caagattgggacgaaatctaggctgaccaccaacatgaataccgcttttgttagcttttcctaca 12582137  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 151
Target Start/End: Complemental strand, 12521952 - 12521888
Alignment:
Q  87 caagattgggaggaaatccaggtggaacaccaacatcattaccacttttgttagcttttcctaca 151  Q
    |||||||| || |||||| |||  || ||||||||| | |||| |||||||||||||||||||||    
T  12521952 caagattgagacgaaatctaggctgaccaccaacatgaataccgcttttgttagcttttcctaca 12521888  T

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Target: scaffold0038 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 123
Target Start/End: Original strand, 19562 - 19601
Alignment:
Q  84 caacaagattgggaggaaatccaggtggaacaccaacatc 123  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  19562 caacaagaatgggaggaaatccaggtagaacaccaacatc 19601  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 84 - 123
Target Start/End: Original strand, 28219064 - 28219103
Alignment:
Q  84 caacaagattgggaggaaatccaggtggaacaccaacatc 123  Q
    |||||||| ||||||||||||||||| |||||||||||||    
T  28219064 caacaagaatgggaggaaatccaggtagaacaccaacatc 28219103  T

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