View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21127_low_6 (Length: 252)
Name: NF21127_low_6
Description: NF21127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21127_low_6 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 101 - 252
Target Start/End: Original strand, 32847459 - 32847610
Alignment:
| Q |
101 |
tagaatatgccaaaaagaaaaccctttgaactaagataagataatatctaactccagctggatgggaaaaaagaaaatatcttcaaagcactcattggat |
200 |
Q |
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| T |
32847459 |
tagaatatgccaaaaagaaaaccctttgaactaagataagataatatctaactccagctggatgggaaaaaagaaaatatcttcaaagcactcattggat |
32847558 |
T |
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| Q |
201 |
accctgtgcgtcacctagttaattagtaaataatctctactaacaatgaaat |
252 |
Q |
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| T |
32847559 |
accctgtgcgtcacctagttaattagtaaataatctctactaacaatgaaat |
32847610 |
T |
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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 76
Target Start/End: Original strand, 32847395 - 32847449
Alignment:
| Q |
22 |
gcgagaccataccatatctcccacgcttgaagcatttttcacacaaatatataaa |
76 |
Q |
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| T |
32847395 |
gcgagaccataccatatctcccacgcttgaagcatttttcacacaaatatataaa |
32847449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 181
Target Start/End: Original strand, 32853132 - 32853204
Alignment:
| Q |
104 |
aatatgccaaaaagaaaaccctttgaactaagataagataatatctaactccagctggatgggaaaaaagaaaatatc |
181 |
Q |
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| T |
32853132 |
aatatgctaaaaagaaaaccctttgaactaag-----ataatatctatctccagctggaaggaaaaaaagaaaatatc |
32853204 |
T |
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