View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21127_low_8 (Length: 244)
Name: NF21127_low_8
Description: NF21127
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21127_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 2 - 226
Target Start/End: Complemental strand, 5664723 - 5664499
Alignment:
| Q |
2 |
ccacactatatattttctaacagttctatcaaagccatgttcggttattcactagcatagcaaaatatgacctcgtgtcaccaactatatattctgcaat |
101 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5664723 |
ccacactatatattttctaacagttctatcagagccatgttcggttattcactagcgtagcaaaatatgacctcgtgtcaccaactatatattctgcaat |
5664624 |
T |
|
| Q |
102 |
atgaattttactatcctactaaattagaaaatccagtctacgactcaaacaaaagtagtataggtagccacaagtccctactttgtttgagttcaaaccc |
201 |
Q |
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||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||| |||||||||||||| || |||||||||||||||||||||||| |
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| T |
5664623 |
atgaattttactatcctactaaactagaaaattcagtctacgactcagacaaaagtaatataggtagccacaggttcctactttgtttgagttcaaaccc |
5664524 |
T |
|
| Q |
202 |
aaaactaagaatgcaatagaggagt |
226 |
Q |
| |
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||||||||||||||||||||||||| |
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|
| T |
5664523 |
aaaactaagaatgcaatagaggagt |
5664499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 62 - 226
Target Start/End: Complemental strand, 5663055 - 5662891
Alignment:
| Q |
62 |
caaaatatgacctcgtgtcaccaactatatattctgcaatatgaattttactatcctactaaattagaaaatccagtctacgactcaaacaaaagtagta |
161 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
5663055 |
caaaatatgacctcgtgtcaccaactatatattctgcaatatgaattttactatcctactaaactagaaaatccagtctacgactcagacaaaagtagta |
5662956 |
T |
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| Q |
162 |
taggtagccacaagtccctactttgtttgagttcaaacccaaaactaagaatgcaatagaggagt |
226 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5662955 |
taggtagccacaaatccctactttgtttgagttcaaacccaaaactaagaatgcaatagaggagt |
5662891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 110 - 226
Target Start/End: Original strand, 5047518 - 5047635
Alignment:
| Q |
110 |
tactatcctactaaattagaaaatccagtctacgactcaaa-caaaagtagtataggtagccacaagtccctactttgtttgagttcaaacccaaaacta |
208 |
Q |
| |
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|||||||| |||||| ||||||||||| | || |||||||| |||||| |||| | || |||| || | ||||| |||||||||||||||||||||| | |
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| T |
5047518 |
tactatccaactaaactagaaaatccaatttatgactcaaaacaaaaggagtacatgtccccaccaggctctactatgtttgagttcaaacccaaaacaa |
5047617 |
T |
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| Q |
209 |
agaatgcaatagaggagt |
226 |
Q |
| |
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|||| ||||||||||||| |
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| T |
5047618 |
agaaggcaatagaggagt |
5047635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 226
Target Start/End: Original strand, 5046747 - 5046864
Alignment:
| Q |
110 |
tactatcctactaaattagaaaatccagtctacgactcaaa-caaaagtagtataggtagccacaagtccctactttgtttgagttcaaacccaaaacta |
208 |
Q |
| |
|
|||||||| |||||| ||||||||||| | || |||||||| |||||| |||| | || |||| || | ||||| ||||||||||||||||||||| | |
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| T |
5046747 |
tactatccaactaaactagaaaatccaatttatgactcaaaacaaaaggagtacatgtccccaccaggctctactatgtttgagttcaaacccaaaataa |
5046846 |
T |
|
| Q |
209 |
agaatgcaatagaggagt |
226 |
Q |
| |
|
|||| ||||||||||||| |
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|
| T |
5046847 |
agaaggcaatagaggagt |
5046864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 118
Target Start/End: Original strand, 15063360 - 15063419
Alignment:
| Q |
59 |
tagcaaaatatgacctcgtgtcaccaactatatattctgcaatatgaattttactatcct |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||| ||| ||| ||||||||| |
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|
| T |
15063360 |
tagcaaaatatgacctcttgtcaccaactatatattctacaacatgtattctactatcct |
15063419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 59 - 226
Target Start/End: Complemental strand, 6824879 - 6824711
Alignment:
| Q |
59 |
tagcaaaatatgacctcgtgtcaccaactatatattctgcaatatgaattttactatcctactaaattagaaaatccagtctacgactc-aaacaaaagt |
157 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||| ||||||| ||||||||||| ||| |||||||||||| ||| | ||| ||||||||| |
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| T |
6824879 |
tagcaaaatatgaccttgtgtcaccaactatatattctacaacatgaattctactatcctaccaaactagaaaatccagcctatggctcaaaacaaaagg |
6824780 |
T |
|
| Q |
158 |
agtataggtagccacaagtccctactttgtttgagttcaaacccaaaactaagaatgcaatagaggagt |
226 |
Q |
| |
|
|||| | ||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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|
| T |
6824779 |
agtacatgtagctacaagggcctactttgtttgagttcaaacctaaaactaagaaggcaatagaggagt |
6824711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 62 - 209
Target Start/End: Original strand, 28787267 - 28787415
Alignment:
| Q |
62 |
caaaatatgacctcgtgtcaccaactatatattctgcaatatgaattttactatcctactaaattagaaaatccagtctacgactc-aaacaaaagtagt |
160 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||| ||||||| ||||||||||||||| |||||||| ||| ||| ||||| ||||||||| ||| |
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| T |
28787267 |
caaaatatgatctcgtgtcaccaactatatattctacaacatgaattctactatcctactaaactagaaaattcagcctatgactcaaaacaaaaggagt |
28787366 |
T |
|
| Q |
161 |
ataggtagccacaagtccctactttgtttgagttcaaacccaaaactaa |
209 |
Q |
| |
|
| | ||||||||||| | ||||| | |||||||||||||| |||||||| |
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|
| T |
28787367 |
acatgtagccacaaggctctactctatttgagttcaaacctaaaactaa |
28787415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 61 - 226
Target Start/End: Original strand, 24853601 - 24853765
Alignment:
| Q |
61 |
gcaaaatatgacctcgtgtcaccaactatatattctgcaatatgaattttactatcctactaaattagaaaatccagtctacgactcaaa-caaaagtag |
159 |
Q |
| |
|
||||||||| ||||| ||||||||||||| | || ||| ||||||| ||||||||||| ||| |||||||| | ||| |||||||| |||||| || |
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|
| T |
24853601 |
gcaaaatataacctcatgtcaccaactattt--tccacaacatgaattctactatcctaccaaactagaaaatttaaactatgactcaaaacaaaaggag |
24853698 |
T |
|
| Q |
160 |
tataggtagccacaagtccctactttgtttgagttcaaacccaaaactaagaatgcaatagaggagt |
226 |
Q |
| |
|
|| || |||||||||| || |||| | |||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
24853699 |
tacagctagccacaaggccttactctatttgagttcaaacccaaaactaagaaggcaatagaggagt |
24853765 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 113 - 226
Target Start/End: Complemental strand, 1275812 - 1275696
Alignment:
| Q |
113 |
tatcctactaaattagaaaatcc-agtctacgactcaaa--caaaagtagtataggtagccacaagtccctactttgtttgagttcaaacccaaaactaa |
209 |
Q |
| |
|
|||||||||||| |||||||||| |||||| |||||||| |||||| ||||||||||||||| || || |||| | ||||||||||||||||||||||| |
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|
| T |
1275812 |
tatcctactaaactagaaaatccgagtctatgactcaaaaacaaaaggagtataggtagccactaggccatactctatttgagttcaaacccaaaactaa |
1275713 |
T |
|
| Q |
210 |
gaatgcaatagaggagt |
226 |
Q |
| |
|
||| | |||||| |||| |
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|
| T |
1275712 |
gaaggaaatagaagagt |
1275696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 102 - 226
Target Start/End: Complemental strand, 37485701 - 37485575
Alignment:
| Q |
102 |
atgaattttactatcctactaaattagaaaatccagtctacgactcaaaca--aaagtagtataggtagccacaagtccctactttgtttgagttcaaac |
199 |
Q |
| |
|
||||||| ||||||| ||||||| ||||||||| ||||| |||||||||| |||| ||||| |||||||| | | ||| || ||| ||||||||||| |
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|
| T |
37485701 |
atgaattctactatcttactaaactagaaaatcaagtctttgactcaaacataaaaggagtatgggtagccatacgacccgaccctgtatgagttcaaac |
37485602 |
T |
|
| Q |
200 |
ccaaaactaagaatgcaatagaggagt |
226 |
Q |
| |
|
||||||||||||| |||| |||||||| |
|
|
| T |
37485601 |
ccaaaactaagaaggcaagagaggagt |
37485575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 137 - 212
Target Start/End: Original strand, 12738527 - 12738604
Alignment:
| Q |
137 |
gtctacgactcaaaca--aaagtagtataggtagccacaagtccctactttgtttgagttcaaacccaaaactaagaa |
212 |
Q |
| |
|
||||| |||||||||| |||| |||||||||||||| ||| ||||| |||| ||||||||||||||||||||||| |
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|
| T |
12738527 |
gtctaagactcaaacagaaaaggagtataggtagccataaggatctactctgttcgagttcaaacccaaaactaagaa |
12738604 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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