View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21128_high_10 (Length: 435)
Name: NF21128_high_10
Description: NF21128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21128_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 47 - 428
Target Start/End: Original strand, 12224103 - 12224489
Alignment:
| Q |
47 |
tatatagcatgcaaagtagttgatggaagaatggagacatgctcaagttattcgctcaagcggtgcaactccctctacttctgatccacatggaccatct |
146 |
Q |
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| T |
12224103 |
tatatagcgtgcaaagtatttgatggaaga-tggagacgtgctcaagttattcgctcaggtggtgaaactccctttacttctgatccacatgggccgtct |
12224201 |
T |
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| Q |
147 |
cttatagcttctcaccgatgggcaaaaatgggcccttggaaggtataaatgcaatatatatgactcg---------ttgttcaataagctagaacttaga |
237 |
Q |
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| T |
12224202 |
cttatagcttctcactgatgggcaaaaataggcccttggaa---ataaatgcaatatatatgtctcgttctcctcgttgttcaacaaggtaggacttaga |
12224298 |
T |
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| Q |
238 |
atgtgtcttagagatgaagaaggaaaatttatgattgcataaactacttggttctccccattttgtgacgtcgatgcaacaagtttatatacgacacttg |
337 |
Q |
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| T |
12224299 |
atgtgtcttagagatgaagaaggaaaatttatgattgcataaactacttggttctccccattttgtgacgtcgatgcaacaagtttatatacgacacttg |
12224398 |
T |
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| Q |
338 |
attgggtggcaaaccttcagttcaataatgtagattttgtgttagattctaagaaggttgttattcttttaggacatatattgatgatgtc |
428 |
Q |
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| T |
12224399 |
attgggtgccaaaccttcagttcaataatgtagattttctgttagattctaagaaggttgttattcttttaggacatatattgatgatgtc |
12224489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 319 - 398
Target Start/End: Complemental strand, 23316356 - 23316277
Alignment:
| Q |
319 |
agtttatatacgacacttgattgggtggcaaaccttcagttcaataatgtagattttgtgttagattctaagaaggttgt |
398 |
Q |
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| T |
23316356 |
agtttataaacggaacttgattgggtggtaaatctttagttccataatgtagattttgtgttcgactctaagaaggttgt |
23316277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 47 - 428
Target Start/End: Complemental strand, 38246598 - 38246201
Alignment:
| Q |
47 |
tatatagcatgcaaagtagttgatggaagaatggagacatgctcaagttattcgctcaagcggtgcaactccctctacttctgatccacatggaccatct |
146 |
Q |
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|||| ||| |||||||||||||||||| |||||||||||||| ||||| ||||| | | | ||| ||||||||||| ||||||||||||||| || || |
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| T |
38246598 |
tatagagcgtgcaaagtagttgatggatgaatggagacatgcacaagtcattcgtttaggtagtgtaactccctctagttctgatccacatgggccgact |
38246499 |
T |
|
| Q |
147 |
cttatagcttctcaccgatgggcaaaaatgggcccttggaaggtataaatgcaatatatatgactcgttgttc---------aataagctagaacttaga |
237 |
Q |
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| T |
38246498 |
cttatagcttggtaacaatgggtaaaaccggcccctag-aaggtataaatgaaaaatagatgcctcgttctcctcgtcgcttaataaggtaggacttgga |
38246400 |
T |
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| Q |
238 |
atgtgtcttagagatgaagaaggaaaatttatgattgcataaactacttggttctccccattttgtgacgtcgatgc---------aacaagtttatata |
328 |
Q |
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|||| ||||||| ||||| || || |||||| ||||| ||| ||| ||||||||||| ||||||||||| |||| || ||||||| || |
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| T |
38246399 |
atgt--cttagaggcgaagagggtaattttatgcttgcaaaaagtacctggttctccccgctttgtgacgtcaatgcgggtgaagcaatgagtttatgta |
38246302 |
T |
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| Q |
329 |
cgacacttgattgggtggcaaaccttcagttcaataatgtagattttgtgttagattctaagaaggttgtt-attcttttaggacatatattgatgatgt |
427 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||| ||||| |||| ||| ||||||| |
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| T |
38246301 |
cgacacttgattgggtggcaaaccttcagtttgataatgtagactttgtgttagattctaagaaggttgttgattcctttagaacatgtataaatgatgt |
38246202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 346 - 425
Target Start/End: Original strand, 46210682 - 46210762
Alignment:
| Q |
346 |
gcaaaccttcagttcaataatgtagattttgtgttagattctaagaaggttgt-tattcttttaggacatatattgatgat |
425 |
Q |
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||||||||||| ||| ||||||| |||||||| |||||||||||||||||||| ||| ||||||||||||||| |||||| |
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| T |
46210682 |
gcaaaccttcatttcgataatgttgattttgttttagattctaagaaggttgtcgattattttaggacatatatagatgat |
46210762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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