View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21128_high_12 (Length: 402)
Name: NF21128_high_12
Description: NF21128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21128_high_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 44112988 - 44112605
Alignment:
| Q |
1 |
tgcgttaattaaaaaacttatgaagttagccaattaatgtaaaatctgaattgtcagaaaccgaactacacatttttagactcaaaacatgtataagtta |
100 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44112988 |
tgcgttaattaaaaatcttatgaagtttgccaattaatgtaaaatctgaattgtcagaaaccgaactacacatttttagactcaaa-catgtataagtta |
44112890 |
T |
|
| Q |
101 |
tgaattgcgagcaccctttttactttttcttcataatttaaagatctcataatgcgagatagattctataaattcagtttgatcaaattttggtctaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44112889 |
tgaattgcgagcaccctttttacttttttttcataatttaaagatctcataatgcgagatagattctataaattcagtttgatcaaattttggtctaatt |
44112790 |
T |
|
| Q |
201 |
ccatttcacaaaacatcatggctcaacatttcattacgcaattcatttgttcacatcnnnnnnnnnnnnnnnnnnnnctaatagatgtctcaatacnnnn |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
44112789 |
ccatttcacaaaacatcatggctcaacatttcattacgcaattcatttgttcacatcaaaaagttaaaaaaataaaactaattgatgtctcaatacaaaa |
44112690 |
T |
|
| Q |
301 |
nnnnnggtcatttgttcataggcaaaagttaacaaacacaattcgttaatgttttcaacattacaaaacatttgattagttaaat |
385 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44112689 |
aaaaagttcatttgttcataggcaaaagttaacaaacacaattcgttaatgttttcaacattacagaacatttgattagttaaat |
44112605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University