View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21128_high_28 (Length: 263)

Name: NF21128_high_28
Description: NF21128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21128_high_28
NF21128_high_28
[»] chr5 (9 HSPs)
chr5 (1-263)||(10548957-10549219)
chr5 (1-263)||(10557084-10557346)
chr5 (138-263)||(19607648-19607773)
chr5 (128-192)||(10718752-10718816)
chr5 (138-192)||(9838182-9838236)
chr5 (154-192)||(10764951-10764989)
chr5 (95-188)||(10609968-10610061)
chr5 (5-189)||(10748872-10749056)
chr5 (146-192)||(10594067-10594113)
[»] chr6 (4 HSPs)
chr6 (130-177)||(12897858-12897905)
chr6 (130-177)||(12905479-12905526)
chr6 (132-192)||(12946936-12946996)
chr6 (141-177)||(12956382-12956418)
[»] chr2 (1 HSPs)
chr2 (141-177)||(17925275-17925311)


Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 10548957 - 10549219
Alignment:
Q  1 aatttgattggaaaaataccaattgaaattgggtctcttcaaaagcttaaacaatttagtgttacacgaaaccttttgactggaagagtccctccattct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10548957 aatttgattggaaaaataccaattgaaattgggtctcttcaaaagcttaaacaatttagtgttacacgaaaccttttgactggaagagtccctccattct 10549056  T
Q  101 tagggaatctttcatatttgataggtttttcagtttcttataacaatttggagggagatattccacaagaaatatgtcgtctcaaaaacttggcagtgat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10549057 tagggaatctttcatatttgataggtttttcagtttcttataacaatttggagggagatattccacaagaaatatgtcgtctcaaaaacttggcagtgat 10549156  T
Q  201 ggtaatggtggtcaacaaaatatctggtacatttcctttgtgtctctacaatatgtcatctct 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10549157 ggtaatggtggtcaacaaaatatctggtacatttcctttgtgtctttacaatatgtcatctct 10549219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 10557084 - 10557346
Alignment:
Q  1 aatttgattggaaaaataccaattgaaattgggtctcttcaaaagcttaaacaatttagtgttacacgaaaccttttgactggaagagtccctccattct 100  Q
    |||||||| |||||||||||||||||||| || ||||||||||||||| || |||| | ||||  | |||||  |||||  ||| ||||||| ||||||     
T  10557084 aatttgatcggaaaaataccaattgaaataggctctcttcaaaagcttcaagaattgaatgttggaagaaacagtttgatcggaggagtcccaccattca 10557183  T
Q  101 tagggaatctttcatatttgataggtttttcagtttcttataacaatttggagggagatattccacaagaaatatgtcgtctcaaaaacttggcagtgat 200  Q
    |||| |||||||||   || | |  | ||||  |||||  |||||| || |||||||||||||| |||||||||||||| || ||| ||||| |    ||    
T  10557184 taggtaatctttcagtcttaacaactctttccatttctcgtaacaacttagagggagatattccccaagaaatatgtcgcctaaaacacttgactaaaat 10557283  T
Q  201 ggtaatggtggtcaacaaaatatctggtacatttcctttgtgtctctacaatatgtcatctct 263  Q
     | | ||| | |||||||| ||||||||||| ||||||  ||||| ||||| |||||||||||    
T  10557284 agcattggggctcaacaaactatctggtacagttccttcatgtctttacaacatgtcatctct 10557346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 138 - 263
Target Start/End: Complemental strand, 19607773 - 19607648
Alignment:
Q  138 ttataacaatttggagggagatattccacaagaaatatgtcgtctcaaaaacttggcagtgatggtaatggtggtcaacaaaatatctggtacatttcct 237  Q
    ||||||||| ||||||||| |||||||  ||||| | ||||| |||||||||||| ||| |||  ||||| |   ||||||| |||||||||||||||||    
T  19607773 ttataacaacttggagggaaatattccgaaagaagtttgtcgcctcaaaaacttgacagggataataatgtttcacaacaaattatctggtacatttcct 19607674  T
Q  238 ttgtgtctctacaatatgtcatctct 263  Q
    |  ||||| | |||||||||||||||    
T  19607673 tcttgtcttttcaatatgtcatctct 19607648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 10718816 - 10718752
Alignment:
Q  128 tttcagtttcttataacaatttggagggagatattccacaagaaatatgtcgtctcaaaaacttg 192  Q
    |||| ||| |||||||||| || || |||| |||||||| |||||||||||||||||||||||||    
T  10718816 tttcggttccttataacaacttagacggagttattccaccagaaatatgtcgtctcaaaaacttg 10718752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 192
Target Start/End: Complemental strand, 9838236 - 9838182
Alignment:
Q  138 ttataacaatttggagggagatattccacaagaaatatgtcgtctcaaaaacttg 192  Q
    |||||| ||||| |||||||||||||||| |||||||||||| || |||||||||    
T  9838236 ttataataatttagagggagatattccacgagaaatatgtcgcctaaaaaacttg 9838182  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 10764989 - 10764951
Alignment:
Q  154 ggagatattccacaagaaatatgtcgtctcaaaaacttg 192  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  10764989 ggagatattccacaagaaatatgtcgcctcaaaaacttg 10764951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 188
Target Start/End: Original strand, 10609968 - 10610061
Alignment:
Q  95 cattcttagggaatctttcatatttgataggtttttcagtttcttataacaatttggagggagatattccacaagaaatatgtcgtctcaaaaa 188  Q
    ||||| |||||||||||||||  || |   ||||||||||| |||  ||||| || || || |||||||||||||||| |||||||||||||||    
T  10609968 cattcgtagggaatctttcatgcttaacgcgtttttcagttacttcaaacaacttagaaggggatattccacaagaaacatgtcgtctcaaaaa 10610061  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 189
Target Start/End: Complemental strand, 10749056 - 10748872
Alignment:
Q  5 tgattggaaaaataccaattgaaattgggtctcttcaaaagcttaaacaatttagtgttacacgaaaccttttgactggaagagtccctccattcttagg 104  Q
    ||||||| |||||||||||||||||||| ||| |  |||||||| ||| | | | ||||    |||||  ||| |||||  || | ||| ||||| ||||    
T  10749056 tgattggcaaaataccaattgaaattggctctttgaaaaagcttcaactaataaatgtttggggaaacaatttaactggtggatttccttcattcatagg 10748957  T
Q  105 gaatctttcatatttgataggtttttcagtttcttataacaatttggagggagatattccacaagaaatatgtcgtctcaaaaac 189  Q
    |||||||||||  || |||||  || | ||| | |||||||| ||  ||||||| ||||||||||||||||||  ||||||||||    
T  10748956 gaatctttcatccttaatagggattgcggttacatataacaacttaaagggagagattccacaagaaatatgtaatctcaaaaac 10748872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 10594067 - 10594113
Alignment:
Q  146 atttggagggagatattccacaagaaatatgtcgtctcaaaaacttg 192  Q
    |||| ||||| |||||||||||||||||||||| ||| |||||||||    
T  10594067 atttagagggtgatattccacaagaaatatgtcatcttaaaaacttg 10594113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 12897858 - 12897905
Alignment:
Q  130 tcagtttcttataacaatttggagggagatattccacaagaaatatgt 177  Q
    ||||||||| | |||||||| |||||||||||||||||||||||||||    
T  12897858 tcagtttctgaaaacaattttgagggagatattccacaagaaatatgt 12897905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 12905479 - 12905526
Alignment:
Q  130 tcagtttcttataacaatttggagggagatattccacaagaaatatgt 177  Q
    |||||||||  ||||||||| |||||||||||||||||||||||||||    
T  12905479 tcagtttctggtaacaattttgagggagatattccacaagaaatatgt 12905526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 192
Target Start/End: Original strand, 12946936 - 12946996
Alignment:
Q  132 agtttcttataacaatttggagggagatattccacaagaaatatgtcgtctcaaaaacttg 192  Q
    ||||||| | |||||||| |||||||| ||||||||||||||||||  ||||||| |||||    
T  12946936 agtttctgaaaacaattttgagggagacattccacaagaaatatgttttctcaaacacttg 12946996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 177
Target Start/End: Original strand, 12956382 - 12956418
Alignment:
Q  141 taacaatttggagggagatattccacaagaaatatgt 177  Q
    ||||||||| |||||||||||||||||||||||||||    
T  12956382 taacaattttgagggagatattccacaagaaatatgt 12956418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 141 - 177
Target Start/End: Complemental strand, 17925311 - 17925275
Alignment:
Q  141 taacaatttggagggagatattccacaagaaatatgt 177  Q
    ||||||||| |||||||||||||||||||||||||||    
T  17925311 taacaattttgagggagatattccacaagaaatatgt 17925275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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