View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21128_high_30 (Length: 251)
Name: NF21128_high_30
Description: NF21128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21128_high_30 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 25535336 - 25535103
Alignment:
| Q |
18 |
aaagctaatgagcttattgatgagcttaagaggtggtgtccgaattattacattggcgatgtgagtgtcacttatatacattggttttttgagcaagaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25535336 |
aaagctaatgagcttattgatgagcttaagaggtggtgtccgaattattacattggcgatgtgagtgtcacttatatacattggttttttgagcaagaaa |
25535237 |
T |
|
| Q |
118 |
gagataaggaggctatggagtgttataactccttattgaaccgcaagtgtatgatgagacctaaaacttgcaatatgctcttggagattttgttcaggtt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25535236 |
gagataaggaggctatggagtgttataactccttattgaaccgcaagtgtatgatgagacctaaaacttgcaatatgctcttggagattttgctcaggtt |
25535137 |
T |
|
| Q |
218 |
tggnnnnnnnnccgaggcttgggacttgtttcat |
251 |
Q |
| |
|
||| ||||||||||||||||||||||| |
|
|
| T |
25535136 |
tggaaaaaaaaccgaggcttgggacttgtttcat |
25535103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 21 - 200
Target Start/End: Original strand, 25515112 - 25515294
Alignment:
| Q |
21 |
gctaatgagcttattgatgagcttaagaggtggtgtccgaattattacattggcgatgtgagtgtcacttatatacattggttttttgagcaagaaagag |
120 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||| ||||||||| || |||| |||| ||| ||||| |
|
|
| T |
25515112 |
gctaatgagcttattgatgaccttaagaggtggtgtccgaattattacaacggcgttgtgagtgccacttatatgcagtggtgctttgtacaaagaagag |
25515211 |
T |
|
| Q |
121 |
ataaggaggctatggagtgttataactccttattgaaccgcaagtgt---atgatgagacctaaaacttgcaatatgctcttg |
200 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||| |
|
|
| T |
25515212 |
agaaggaggctatggagtgttataactccttattgaaccgcaagtgtacgatgatgagacctgaaacttgcaatattctcttg |
25515294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 251
Target Start/End: Complemental strand, 25527301 - 25527071
Alignment:
| Q |
21 |
gctaatgagcttattgatgagcttaagaggtggtgtccgaattattacattggcgatgtgagtgtcacttatatacattggttttttgagcaagaaagag |
120 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||| |||| || ||| | |||||||| |||||| || |||||||| || |||||| ||||| |
|
|
| T |
25527301 |
gctaatgagtttattgatgagcttaagataaggtgtccatattaccaccatggtgttgtgagtgccacttacatgaattggtttcttaagcaaggaagag |
25527202 |
T |
|
| Q |
121 |
ataaggaggctatggagtgttataactccttattgaaccgcaagtgtatgatgagacctaaaacttgcaatatgctcttggagattttgttcaggtttgg |
220 |
Q |
| |
|
||||||| || |||||||||||||| || ||||||||||||||||||| |||||||||| ||||| || || | ||||||||| ||||| ||| || ||| |
|
|
| T |
25527201 |
ataaggacgccatggagtgttataagtctttattgaaccgcaagtgtaggatgagacctgaaactggcgatgttctcttggaggttttgctcaagtatgg |
25527102 |
T |
|
| Q |
221 |
nnnnnnnnccgaggcttgggacttgtttcat |
251 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
25527101 |
aaagaaaactgaggcttgggacttgtttcat |
25527071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 191
Target Start/End: Complemental strand, 25538248 - 25538156
Alignment:
| Q |
99 |
tggttttttgagcaagaaagagataaggaggctatggagtgttataactccttattgaaccgcaagtgtatgatgagacctaaaacttgcaat |
191 |
Q |
| |
|
||||||||| || | | |||||| ||||| || ||||||| |||| ||||||||||||||| ||||| || |||||||||| ||||||||||| |
|
|
| T |
25538248 |
tggttttttaaggagggaagagaaaaggaagccatggagtcttatgactccttattgaaccacaagtttaggatgagacctgaaacttgcaat |
25538156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University