View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21128_high_35 (Length: 247)

Name: NF21128_high_35
Description: NF21128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21128_high_35
NF21128_high_35
[»] chr7 (27 HSPs)
chr7 (1-240)||(44423141-44423374)
chr7 (67-240)||(9650971-9651138)
chr7 (79-240)||(26341136-26341290)
chr7 (73-240)||(4930164-4930324)
chr7 (67-234)||(8268218-8268378)
chr7 (68-240)||(8075975-8076141)
chr7 (73-240)||(13314240-13314400)
chr7 (104-240)||(44510681-44510811)
chr7 (74-231)||(27238173-27238324)
chr7 (119-240)||(23246937-23247052)
chr7 (127-240)||(4579492-4579599)
chr7 (73-227)||(42627214-42627362)
chr7 (67-217)||(30256779-30256922)
chr7 (141-240)||(23866066-23866159)
chr7 (118-234)||(3357642-3357752)
chr7 (122-234)||(29150913-29151019)
chr7 (67-176)||(10388427-10388547)
chr7 (118-240)||(12254054-12254170)
chr7 (184-240)||(6590987-6591043)
chr7 (74-240)||(9008086-9008254)
chr7 (127-179)||(25543421-25543473)
chr7 (76-240)||(3879930-3880089)
chr7 (194-240)||(12799455-12799501)
chr7 (68-118)||(26287290-26287339)
chr7 (74-118)||(15642154-15642197)
chr7 (127-179)||(16372382-16372434)
chr7 (142-178)||(47993800-47993836)
[»] chr2 (27 HSPs)
chr2 (67-234)||(30650854-30651014)
chr2 (67-240)||(9180728-9180894)
chr2 (68-240)||(1934997-1935162)
chr2 (68-240)||(9189807-9189972)
chr2 (67-240)||(25478301-25478471)
chr2 (67-240)||(10160728-10160894)
chr2 (68-240)||(18344357-18344522)
chr2 (68-240)||(19892470-19892635)
chr2 (67-241)||(42926762-42926930)
chr2 (67-240)||(30658188-30658354)
chr2 (74-226)||(28603230-28603375)
chr2 (68-240)||(29677308-29677472)
chr2 (68-240)||(35601848-35602013)
chr2 (68-240)||(31326665-31326830)
chr2 (68-240)||(12796851-12797016)
chr2 (74-240)||(7737855-7738014)
chr2 (68-240)||(35639001-35639166)
chr2 (68-240)||(29677694-29677858)
chr2 (68-240)||(30631505-30631670)
chr2 (68-240)||(25497329-25497498)
chr2 (68-155)||(15489797-15489883)
chr2 (118-235)||(19578423-19578534)
chr2 (180-229)||(21523735-21523784)
chr2 (121-233)||(40847606-40847712)
chr2 (68-118)||(20711358-20711408)
chr2 (67-105)||(40847742-40847780)
chr2 (133-177)||(160031-160075)
[»] chr3 (33 HSPs)
chr3 (67-240)||(7571222-7571388)
chr3 (73-240)||(758372-758532)
chr3 (67-240)||(3672509-3672675)
chr3 (67-240)||(3692541-3692707)
chr3 (67-240)||(23666127-23666293)
chr3 (67-240)||(24038375-24038541)
chr3 (68-240)||(39775732-39775897)
chr3 (68-240)||(18467149-18467314)
chr3 (73-240)||(49971428-49971588)
chr3 (74-240)||(8883100-8883259)
chr3 (73-232)||(3033573-3033725)
chr3 (73-240)||(12965877-12966037)
chr3 (67-240)||(3418917-3419084)
chr3 (74-240)||(8887860-8888019)
chr3 (68-240)||(14438699-14438864)
chr3 (68-240)||(29350164-29350329)
chr3 (67-234)||(20519977-20520137)
chr3 (68-240)||(8069603-8069768)
chr3 (73-232)||(29715573-29715725)
chr3 (67-240)||(18471931-18472096)
chr3 (75-234)||(3657250-3657402)
chr3 (73-240)||(55431244-55431404)
chr3 (90-240)||(32474684-32474825)
chr3 (74-179)||(27708808-27708912)
chr3 (67-240)||(23661468-23661620)
chr3 (67-176)||(2207769-2207877)
chr3 (118-240)||(12112645-12112761)
chr3 (127-232)||(12971645-12971744)
chr3 (122-178)||(25726853-25726908)
chr3 (180-240)||(27708965-27709025)
chr3 (141-179)||(26962058-26962096)
chr3 (74-118)||(16013650-16013693)
chr3 (184-220)||(20507686-20507722)
[»] scaffold0352 (1 HSPs)
scaffold0352 (68-240)||(7030-7195)
[»] chr5 (35 HSPs)
chr5 (68-240)||(12102950-12103116)
chr5 (68-240)||(7451684-7451849)
chr5 (68-240)||(29167977-29168142)
chr5 (73-240)||(36423568-36423728)
chr5 (67-240)||(556620-556786)
chr5 (67-240)||(561392-561558)
chr5 (67-240)||(39518335-39518501)
chr5 (67-240)||(42001359-42001525)
chr5 (64-240)||(6514605-6514773)
chr5 (68-240)||(12045143-12045309)
chr5 (68-240)||(26667198-26667363)
chr5 (68-240)||(26938795-26938960)
chr5 (70-240)||(36428637-36428800)
chr5 (67-240)||(41996590-41996756)
chr5 (68-240)||(37248799-37248964)
chr5 (67-240)||(12501903-12502070)
chr5 (67-240)||(39522973-39523140)
chr5 (90-240)||(36942269-36942412)
chr5 (68-240)||(10759824-10759992)
chr5 (68-232)||(3665857-3666015)
chr5 (68-240)||(37652834-37652999)
chr5 (68-240)||(41587164-41587329)
chr5 (90-240)||(36937515-36937658)
chr5 (74-240)||(6155423-6155582)
chr5 (66-240)||(35679879-35680049)
chr5 (75-240)||(40147828-40147986)
chr5 (73-240)||(11981284-11981443)
chr5 (67-240)||(12041936-12042102)
chr5 (68-234)||(20181073-20181233)
chr5 (68-133)||(37550106-37550170)
chr5 (141-240)||(32461553-32461646)
chr5 (119-220)||(12102855-12102950)
chr5 (127-241)||(15414884-15414992)
chr5 (194-240)||(37550036-37550082)
chr5 (180-233)||(16116260-16116313)
[»] scaffold0182 (1 HSPs)
scaffold0182 (68-240)||(9891-10056)
[»] scaffold0002 (3 HSPs)
scaffold0002 (68-240)||(4000-4165)
scaffold0002 (67-149)||(444021-444102)
scaffold0002 (180-228)||(443960-444007)
[»] chr4 (39 HSPs)
chr4 (67-240)||(13521996-13522163)
chr4 (67-240)||(31273446-31273612)
chr4 (73-240)||(31268965-31269125)
chr4 (67-240)||(37264568-37264734)
chr4 (67-240)||(19106544-19106710)
chr4 (67-240)||(37259881-37260047)
chr4 (67-240)||(5271423-5271587)
chr4 (68-240)||(16420956-16421120)
chr4 (67-240)||(32082095-32082260)
chr4 (68-232)||(8693637-8693794)
chr4 (73-240)||(51697844-51698008)
chr4 (68-240)||(5928223-5928388)
chr4 (68-240)||(8030480-8030645)
chr4 (88-240)||(31765828-31765977)
chr4 (86-240)||(13059354-13059501)
chr4 (67-240)||(12823899-12824065)
chr4 (73-234)||(33468983-33469137)
chr4 (67-240)||(55251646-55251810)
chr4 (67-169)||(32221166-32221267)
chr4 (84-240)||(47574566-47574716)
chr4 (68-240)||(19101903-19102068)
chr4 (104-240)||(33463360-33463490)
chr4 (74-219)||(51696931-51697072)
chr4 (127-240)||(42758759-42758866)
chr4 (118-240)||(12874514-12874630)
chr4 (118-240)||(12878214-12878330)
chr4 (86-240)||(47244192-47244339)
chr4 (180-240)||(31729391-31729451)
chr4 (73-125)||(55810260-55810311)
chr4 (119-169)||(6070563-6070613)
chr4 (67-117)||(8652129-8652179)
chr4 (67-117)||(8663936-8663986)
chr4 (118-234)||(13065778-13065888)
chr4 (117-240)||(2819818-2819935)
chr4 (67-124)||(31729485-31729541)
chr4 (68-240)||(48276653-48276807)
chr4 (180-240)||(16953116-16953176)
chr4 (68-118)||(23093106-23093155)
chr4 (141-178)||(24490030-24490067)
[»] chr1 (29 HSPs)
chr1 (67-240)||(23192821-23192987)
chr1 (68-240)||(19799017-19799182)
chr1 (67-232)||(26927734-26927892)
chr1 (68-240)||(33301184-33301349)
chr1 (73-220)||(3094045-3094185)
chr1 (67-233)||(16649624-16649782)
chr1 (67-232)||(40165905-40166063)
chr1 (68-240)||(47455390-47455555)
chr1 (67-234)||(51041473-51041631)
chr1 (67-207)||(25855096-25855229)
chr1 (67-234)||(47451235-47451395)
chr1 (73-234)||(38620624-38620777)
chr1 (68-232)||(10135382-10135539)
chr1 (67-240)||(16035527-16035699)
chr1 (73-240)||(18784553-18784713)
chr1 (75-175)||(16832034-16832133)
chr1 (68-240)||(39588371-39588536)
chr1 (67-232)||(10140014-10140172)
chr1 (68-149)||(25843738-25843818)
chr1 (118-240)||(11806334-11806450)
chr1 (118-240)||(8900229-8900345)
chr1 (118-228)||(12259971-12260075)
chr1 (132-234)||(5346652-5346748)
chr1 (67-118)||(46696595-46696645)
chr1 (180-230)||(12906186-12906235)
chr1 (141-178)||(5602484-5602521)
chr1 (180-225)||(27761858-27761902)
chr1 (73-118)||(28434705-28434749)
chr1 (180-240)||(2493822-2493881)
[»] chr6 (25 HSPs)
chr6 (80-240)||(11570753-11570906)
chr6 (67-240)||(6407864-6408030)
chr6 (67-240)||(21308959-21309122)
chr6 (67-240)||(2700110-2700277)
chr6 (68-220)||(19674239-19674384)
chr6 (73-240)||(12688902-12689062)
chr6 (67-240)||(8747707-8747873)
chr6 (68-179)||(11534737-11534847)
chr6 (68-179)||(11560247-11560357)
chr6 (68-240)||(33687607-33687772)
chr6 (74-179)||(11427975-11428079)
chr6 (118-240)||(20748288-20748404)
chr6 (73-231)||(12406366-12406527)
chr6 (73-134)||(17964634-17964694)
chr6 (67-230)||(25316580-25316740)
chr6 (67-230)||(26204074-26204234)
chr6 (180-240)||(16836160-16836220)
chr6 (180-240)||(17964563-17964623)
chr6 (185-240)||(11614096-11614151)
chr6 (127-240)||(24589168-24589275)
chr6 (122-240)||(13736682-13736794)
chr6 (118-240)||(29892265-29892381)
chr6 (127-169)||(2882824-2882866)
chr6 (90-135)||(14508932-14508976)
chr6 (117-149)||(19995440-19995472)
[»] chr8 (30 HSPs)
chr8 (67-240)||(17025860-17026026)
chr8 (67-240)||(17556352-17556518)
chr8 (67-240)||(31449870-31450036)
chr8 (68-240)||(44925927-44926092)
chr8 (68-234)||(33416473-33416632)
chr8 (67-232)||(1807397-1807555)
chr8 (73-220)||(4238339-4238479)
chr8 (67-240)||(18876371-18876536)
chr8 (73-220)||(4243078-4243218)
chr8 (67-240)||(38182241-38182406)
chr8 (67-208)||(40130722-40130856)
chr8 (67-231)||(34118391-34118548)
chr8 (67-240)||(1910973-1911139)
chr8 (73-228)||(28559670-28559818)
chr8 (127-234)||(40125895-40125996)
chr8 (117-240)||(19166608-19166725)
chr8 (118-234)||(24090602-24090712)
chr8 (111-232)||(2355471-2355586)
chr8 (127-240)||(15875672-15875779)
chr8 (68-149)||(19915073-19915153)
chr8 (115-240)||(36683551-36683670)
chr8 (119-234)||(17953883-17953992)
chr8 (118-232)||(23548644-23548752)
chr8 (68-240)||(43302722-43302880)
chr8 (180-240)||(12820370-12820430)
chr8 (118-232)||(2965606-2965713)
chr8 (76-139)||(28565268-28565330)
chr8 (76-139)||(28572891-28572953)
chr8 (127-179)||(24673384-24673436)
chr8 (188-232)||(29220303-29220347)
[»] scaffold0057 (1 HSPs)
scaffold0057 (67-240)||(35559-35725)
[»] scaffold0012 (1 HSPs)
scaffold0012 (68-240)||(166090-166256)
[»] scaffold0045 (1 HSPs)
scaffold0045 (67-240)||(82990-83157)
[»] scaffold0054 (1 HSPs)
scaffold0054 (75-240)||(25332-25490)
[»] scaffold0240 (1 HSPs)
scaffold0240 (118-169)||(3966-4017)
[»] scaffold0097 (1 HSPs)
scaffold0097 (68-118)||(15197-15247)
[»] scaffold0008 (1 HSPs)
scaffold0008 (180-240)||(255848-255908)


Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 44423374 - 44423141
Alignment:
Q  1 tgaagctctcttcacaaactccatgactacgtctgctttcgatctgttatcatctgtcattgcatcttgttatttttggattttcaaactgttgtatttg 100  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  44423374 tgaagctctcttcacaaactccatgactgcgtctgcttccgatctgttatcatctgtcattacatcttgttgtttttggattttcaaactgttgtatttg 44423275  T
Q  101 gattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaat 200  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||| |||      |||||||||||||||||||||    
T  44423274 gatttcccaaattctattatctaccaaagttgttactaggttgagtcacgatcagatcgctctctttaagacg------tttcgtggcactgaccaaaat 44423181  T
Q  201 tgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| ||||||||||||||||  ||||||||||||| ||||    
T  44423180 tgttcaaggcagactatcaactacgccgcctccaggataa 44423141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 9651138 - 9650971
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| ||||||||||||||||||||||||||| | ||||||||||||| || |||||| ||||||||||||| ||||||||| ||||| ||||||||||    
T  9651138 ttgttgtttttggattttcaaactgttgtattttggttttccaaattctgttttctaccgaagttgttactaggttgagtcacgaccaggtcgctctctt 9651039  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| |||      ||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||    
T  9651038 taagacg------tttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataa 9650971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 79 - 240
Target Start/End: Original strand, 26341136 - 26341290
Alignment:
Q  79 gattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcg 178  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||||| ||          
T  26341136 gattttcaaactgttgtatttggattt-ccaaaatctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctctttaagac------ 26341228  T
Q  179 ttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
     ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  26341229 atttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 26341290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 73 - 240
Target Start/End: Original strand, 4930164 - 4930324
Alignment:
Q  73 tttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatac 172  Q
    |||||| |||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||||| ||    
T  4930164 tttttgaatttccaaactgttgtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctctttaagac 4930262  T
Q  173 gtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    |      ||||||||||||| ||||||||||| ||| || |||||||| |||||||||||||| ||||    
T  4930263 g------tttcgtggcactgcccaaaattgtgtaagtcatactatcaaccacgccgcctccaggataa 4930324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 67 - 234
Target Start/End: Original strand, 8268218 - 8268378
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| ||||||||||| |||||||||||||||| |||| ||||||||||||||||||| |||||||||||| |||||||||| ||||| ||||||||||    
T  8268218 ttgttgtttttggatttccaaactgttgtatttgcattt-ccaaattctattatctaccgaagttgttactatattgagtcacgaccaggtcgctctctt 8268316  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctcca 234  Q
    ||| |||      ||| ||||||||| ||||||||||||||| ||||||||||| |||||| ||||||    
T  8268317 taagacg------ttttgtggcactgtccaaaattgtgcaagacagactatcaaccacgccacctcca 8268378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 8075975 - 8076141
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||||||||| ||||||||||||||| | ||||||||||||||||||||||  ||||||||||| | ||||||||| ||||| |||||||||||    
T  8075975 tgttgtttttggatttccaaactgttgtattttggttttccaaattctattatctactgaagttgttactgggttgagtcacgaccaggtcgctctcttt 8076074  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || |||      ||||||||||||| | ||||||||||||| ||||||||||| ||||| |||||||| ||||    
T  8076075 aagacg------tttcgtggcactgcctaaaattgtgcaagacagactatcaaccacgctgcctccaggataa 8076141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 73 - 240
Target Start/End: Complemental strand, 13314400 - 13314240
Alignment:
Q  73 tttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatac 172  Q
    ||||||| ||| ||||||||||||||||||||| |||||||||| ||||||||  |||||||||||| ||||||||| ||||||||||||||||||| ||    
T  13314400 tttttgggtttccaaactgttgtatttggattt-ccaaattctactatctaccgtagttgttactaggttgagtcacgaccagatcgctctctttaagac 13314302  T
Q  173 gtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    |      |||||||| |||| |||||||||||||||| |||||||||  |||| ||||||||| ||||    
T  13314301 g------tttcgtggtactgcccaaaattgtgcaaggtagactatcagccacgtcgcctccaggataa 13314240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 104 - 240
Target Start/End: Complemental strand, 44510811 - 44510681
Alignment:
Q  104 tttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgt 203  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||| ||||||| ||||||||||| |||      ||| ||||||||| ||||||||||    
T  44510811 tttccaaattctattatctaccgaagttgttactaggttgagtcacgaccagattgctctctttaagacg------ttttgtggcactgtccaaaattgt 44510718  T
Q  204 gcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||||| ||||||||||| |||||||||||||| ||||    
T  44510717 gcaagacagactatcaaccacgccgcctccaggataa 44510681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 74 - 231
Target Start/End: Original strand, 27238173 - 27238324
Alignment:
Q  74 ttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacg 173  Q
    ||||||||||  ||||| ||||||||||||||| |||| |||||||||||   ||||||||||||| ||||||||| ||||| ||||||||||||| |||    
T  27238173 ttttggatttctaaactattgtatttggatttttcaaactctattatctatggaagttgttactaggttgagtcacgaccaggtcgctctctttaagacg 27238272  T
Q  174 tttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcct 231  Q
          ||| |||||||||  |||||||||| ||||||||||||||||||||||||||    
T  27238273 ------ttttgtggcactgctcaaaattgtgtaaggcagactatcaatcacgccgcct 27238324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 119 - 240
Target Start/End: Complemental strand, 23247052 - 23246937
Alignment:
Q  119 atctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatc 218  Q
    ||||||| ||||||||||||||||||||||| ||||| ||||||||||||| | |||||||      ||||||| |||||||||||||||||||||||||    
T  23247052 atctaccgaagttgttactagattgagtcacgaccaggtcgctctctttaagatgtttcgt------ggcactgcccaaaattgtgcaaggcagactatc 23246959  T
Q  219 aatcacgccgcctccagaataa 240  Q
    || |||||||||||||| ||||    
T  23246958 aaccacgccgcctccaggataa 23246937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 127 - 240
Target Start/End: Original strand, 4579492 - 4579599
Alignment:
Q  127 aagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgc 226  Q
    ||||||||||||| ||||||||| ||||| ||||||||||||| |||||||      ||||||||| ||||||||||||||||||||||||||| |||||    
T  4579492 aagttgttactaggttgagtcacgaccaggtcgctctctttaagacgtttc------gtggcactgcccaaaattgtgcaaggcagactatcaaccacgc 4579585  T
Q  227 cgcctccagaataa 240  Q
    ||||||||| ||||    
T  4579586 cgcctccaggataa 4579599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 73 - 227
Target Start/End: Complemental strand, 42627362 - 42627214
Alignment:
Q  73 tttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttac-tagattgagtcacaaccagatcgctctctttaata 171  Q
    |||||| |||| |||||||||||||||| |||| ||||||||||||||||||| |||||||||| ||| |||| |||| ||||| ||||||||||||| |    
T  42627362 tttttgaatttccaaactgttgtatttgaattt-ccaaattctattatctaccgaagttgttacttaggttgattcacgaccaggtcgctctctttaaga 42627264  T
Q  172 cgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgcc 227  Q
    ||      |||||||||||   |||||||||||||| |||||||||||| ||||||    
T  42627263 cg------tttcgtggcacaacccaaaattgtgcaaagcagactatcaaccacgcc 42627214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 67 - 217
Target Start/End: Original strand, 30256779 - 30256922
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| |||||||||||  ||||| |||||||||||||| | ||||||||||||||||| ||||| |||| || ||||||||| ||||||||||| | ||    
T  30256779 ttgttgtttttggatttataaactattgtatttggatttgc-aaattctattatctaccgaagtttttacaaggttgagtcacgaccagatcgctgtttt 30256877  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactat 217  Q
    ||| ||       ||||||||||||| |||||||||||||| |||||||||    
T  30256878 taagac------atttcgtggcactgcccaaaattgtgcaaagcagactat 30256922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 141 - 240
Target Start/End: Original strand, 23866066 - 23866159
Alignment:
Q  141 ttgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||||||||| ||||| ||||||||||||| |||||||      ||||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||    
T  23866066 ttgagtcacgaccaggtcgctctctttaagacgtttc------gtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataa 23866159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 234
Target Start/End: Complemental strand, 3357752 - 3357642
Alignment:
Q  118 tatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactat 217  Q
    |||||||| ||||||||||||| ||||||||| ||||| ||||||||||||| |||      ||||| || || | ||||| ||||||||||||||||||    
T  3357752 tatctaccgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacg------tttcgcggtacagcccaaagttgtgcaaggcagactat 3357659  T
Q  218 caatcacgccgcctcca 234  Q
    ||| ||||||| |||||    
T  3357658 caaccacgccgtctcca 3357642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 122 - 234
Target Start/End: Original strand, 29150913 - 29151019
Alignment:
Q  122 taccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaat 221  Q
    |||| ||||||||||||| ||||||||| ||||||||||||| ||||| |||      ||||||| |||||  ||||||||||||||||| ||||||||     
T  29150913 taccgaagttgttactaggttgagtcacgaccagatcgctctttttaagacg------tttcgtgacactgctcaaaattgtgcaaggcaaactatcaac 29151006  T
Q  222 cacgccgcctcca 234  Q
    |||| ||||||||    
T  29151007 cacgtcgcctcca 29151019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 176
Target Start/End: Complemental strand, 10388547 - 10388427
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctatt------------atctaccaaagttgttactagattgagtcacaacca 154  Q
    ||||| ||||| ||||||||| ||||||||||||||||| ||||||||||||            ||||||| ||||||||||||| ||||||||| ||||    
T  10388547 ttgttgtttttagattttcaagctgttgtatttggattt-ccaaattctattttgaaaaagaatatctaccgaagttgttactaggttgagtcacgacca 10388449  T
Q  155 gatcgctctctttaatacgttt 176  Q
    | ||||||||||||| ||||||    
T  10388448 ggtcgctctctttaagacgttt 10388427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 240
Target Start/End: Original strand, 12254054 - 12254170
Alignment:
Q  118 tatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactat 217  Q
    |||||| | |||||||||| || ||||||| | ||||| ||||||||||||| | |||| ||      ||||||| | ||| ||||||||||||||||||    
T  12254054 tatctatcgaagttgttaccaggttgagtcgcgaccaggtcgctctctttaagatgttttgt------ggcactgcctaaagttgtgcaaggcagactat 12254147  T
Q  218 caatcacgccgcctccagaataa 240  Q
    |||||||||||||| ||| ||||    
T  12254148 caatcacgccgcctacaggataa 12254170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 6591043 - 6590987
Alignment:
Q  184 gtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||||||||| | ||||||||||||||||||||||||| |||||||||| ||| ||||    
T  6591043 gtggcactgtctaaaattgtgcaaggcagactatcaaccacgccgccttcaggataa 6590987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 74 - 240
Target Start/End: Original strand, 9008086 - 9008254
Alignment:
Q  74 ttttggattttcaaactgttgtatttggattttccaaattctattatc--------taccaaagttgttactagattgagtcacaaccagatcgctctct 165  Q
    |||||||||| ||||||||||||||| | ||||| |||||||||| |         |||||||||||||||||| ||||||||| ||||  || ||||||    
T  9008086 ttttggatttccaaactgttgtattttggttttctaaattctattttgaaagagagtaccaaagttgttactaggttgagtcacgaccatgtccctctct 9008185  T
Q  166 ttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    |||| |||      ||| ||| ||||   |||||||||||||||||| |||||||||| |  |||||||| ||||    
T  9008186 ttaagacg------tttagtgacactactcaaaattgtgcaaggcaggctatcaatcatgaagcctccaggataa 9008254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 25543473 - 25543421
Alignment:
Q  127 aagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgt 179  Q
    ||||||||||||| ||||||||||| ||| |||| |||||||| |||||||||    
T  25543473 aagttgttactaggttgagtcacaatcaggtcgcactctttaagacgtttcgt 25543421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 240
Target Start/End: Original strand, 3879930 - 3880089
Alignment:
Q  76 ttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttacta-gattgagtcacaaccagatcgctctctttaatacgt 174  Q
    ||||||||| ||| |||||||||| ||||| |||||||||||| || ||| || ||||||||| | ||||||||| | ||| || || ||||||| |||     
T  3879930 ttggatttttaaattgttgtattttgattt-ccaaattctattttccaccgaatttgttactaggtttgagtcacgatcaggtcactttctttaagacg- 3880027  T
Q  175 ttcgttttcgtggcactgaccaaaa-ttgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
         ||| ||| |||||  ||||| ||||| |||| |||||||||| |||||||||||||| ||||    
T  3880028 -----ttttgtgacactgttcaaaatttgtgtaaggaagactatcaaccacgccgcctccaggataa 3880089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 240
Target Start/End: Original strand, 12799455 - 12799501
Alignment:
Q  194 ccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||||||||||||||||||||||||||| |||||| | ||||| ||||    
T  12799455 ccaaaattgtgcaaggcagactatcaaccacgccacatccaggataa 12799501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 118
Target Start/End: Complemental strand, 26287339 - 26287290
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctatt 118  Q
    |||| |||||||||||  ||||||||||||||||| |||||||||||||||    
T  26287339 tgttgtttttggatttcaaaactgttgtatttgga-tttccaaattctatt 26287290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 15642154 - 15642197
Alignment:
Q  74 ttttggattttcaaactgttgtatttggattttccaaattctatt 118  Q
    ||||||||||| |||||| |||||||||||||| |||||||||||    
T  15642154 ttttggatttttaaactgctgtatttggatttt-caaattctatt 15642197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 16372382 - 16372434
Alignment:
Q  127 aagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgt 179  Q
    ||||||||||||| ||||||||| ||||  ||||||||||||| | |||||||    
T  16372382 aagttgttactaggttgagtcacgaccaagtcgctctctttaagatgtttcgt 16372434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 47993800 - 47993836
Alignment:
Q  142 tgagtcacaaccagatcgctctctttaatacgtttcg 178  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  47993800 tgagtcacaaccaggtcgctctctttaagacgtttcg 47993836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 67 - 234
Target Start/End: Original strand, 30650854 - 30651014
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||    
T  30650854 ttgttgtttttggatttccaaactgttgtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccagatcgctctctt 30650952  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctcca 234  Q
    ||| |||      ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  30650953 taagacg------tttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctcca 30651014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 9180894 - 9180728
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| |||||| |||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||    
T  9180894 ttgttgtttttgaatttccaaactgttgtatttggattttc-aaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctctt 9180796  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| |||      ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  9180795 taagacg------tttcgtggcactgtccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 9180728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 1935162 - 1934997
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| |||||||||||    
T  1935162 tgttgtttttgaattttcaaactgttgtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctcttt 1935064  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || |||      ||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||    
T  1935063 aagacg------tttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataa 1934997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 9189972 - 9189807
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| | |||||||||    
T  9189972 tgttgtttttggatttccaaactgttgtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggttgctctcttt 9189874  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || |||      ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  9189873 aagacg------tttcgtggcactgtccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 9189807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 25478471 - 25478301
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaa---attctattatctaccaaagttgttactagattgagtcacaaccagatcgctct 163  Q
    ||||| |||||||||||||||||| |||||||||||||| | ||   ||||||||||||||| ||||||||||||| ||||||||||||||| |||||||    
T  25478471 ttgttgtttttggattttcaaactattgtatttggatttccaaattcattctattatctaccgaagttgttactaggttgagtcacaaccaggtcgctct 25478372  T
Q  164 ctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    |||||| |||      ||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  25478371 ctttaagacg------tttcgtgacactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccagaataa 25478301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 10160894 - 10160728
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| ||||||||||| |||||| |||||||||||||| | ||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||    
T  10160894 ttgttgtttttggatttccaaactcttgtatttggattt-ctaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctctt 10160796  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| |||      ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  10160795 taagacg------tttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 10160728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 18344357 - 18344522
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| ||||| |||||||||||    
T  18344357 tgttgtttttggatttccaaactgttgtatttggattttc-aaattctattatcaaccgaagttgttactagattgagtcacgaccaggtcgctctcttt 18344455  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || |||      ||||||||||||| |||||||||||||||||||||||| || ||||||| |||||| ||||    
T  18344456 aagacg------tttcgtggcactgcccaaaattgtgcaaggcagactattaaccacgccggctccaggataa 18344522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 19892635 - 19892470
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| |||||||||||    
T  19892635 tgttgtttttggatttccaaactgttgtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctcttt 19892537  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || |||      |||| |||||||| ||||||||||||||  ||||||||||| |||||||||||||| ||||    
T  19892536 aagacg------tttcctggcactgtccaaaattgtgcaacacagactatcaaccacgccgcctccaggataa 19892470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 67 - 241
Target Start/End: Complemental strand, 42926930 - 42926762
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| | |||  |||||||||    
T  42926930 ttgttgtttttggattttcaaactgtt-tatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgatcaggccgctctctt 42926833  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataat 241  Q
    ||| ||    || ||||||||||||| |||||||||||||||| |||||||||| |||||||||||||| |||||    
T  42926832 taagac---acg-tttcgtggcactgcccaaaattgtgcaaggtagactatcaaccacgccgcctccaggataat 42926762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 67 - 240
Target Start/End: Original strand, 30658188 - 30658354
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| ||||||||||| |||||||||||||||| |||| |||| |||||||||||||| ||||||||||||  ||||||||| ||||| ||||||||||    
T  30658188 ttgttgtttttggatttccaaactgttgtatttgcattt-ccaagttctattatctaccgaagttgttactatgttgagtcacgaccaggtcgctctctt 30658286  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| |||      ||||||||||||   |||||||||||||||||||||||||| |||||||||||||| ||||    
T  30658287 taagacg------tttcgtggcactactcaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 30658354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 74 - 226
Target Start/End: Original strand, 28603230 - 28603375
Alignment:
Q  74 ttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacg 173  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||||| |||    
T  28603230 ttttggatttccaaactgttgtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctctttaaaacg 28603328  T
Q  174 tttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgc 226  Q
          ||||||| ||||| ||||||||||||||| ||||||||||| |||||    
T  28603329 ------tttcgtgacactgtccaaaattgtgcaagacagactatcaaccacgc 28603375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 29677308 - 29677472
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||||||||||||||| |||||||||||||||| |||||| ||||||||||||||| | ||||||||||||| ||||||||| | ||  |||||||||||    
T  29677308 tgttatttttggattt-caaactgttgtatttgaattttc-aaattctattatctagcgaagttgttactaggttgagtcacgatcatgtcgctctcttt 29677405  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || |||      ||||||||||||| |||||||||||||| |||||||||||| |||||||||||||| ||||    
T  29677406 aagacg------tttcgtggcactgcccaaaattgtgcaaagcagactatcaaccacgccgcctccaggataa 29677472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 35601848 - 35602013
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||||||||| |||||| |||||||||||||||| ||||||||||||||||| ||||||||||||| |||| |||| ||||| ||||||| |||    
T  35601848 tgttgtttttggatttccaaactattgtatttggattttc-aaattctattatctaccgaagttgttactaggttgaatcacgaccaggtcgctcttttt 35601946  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || |||      ||||||||||||| ||||||||||||||| |||| |||||| |||||||||||||| ||||    
T  35601947 aagacg------tttcgtggcactgtccaaaattgtgcaagacagagtatcaaccacgccgcctccaggataa 35602013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 31326665 - 31326830
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||||||||| |||| ||||||| ||| |||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| |||||||||||    
T  31326665 tgttgtttttggatttccaaaatgttgtaattgaattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctcttt 31326763  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || |||      |||| || ||||| ||||||||||||||||||||||||||| |||||| ||||||| ||||    
T  31326764 aagacg------tttcatgccactgcccaaaattgtgcaaggcagactatcaaccacgccacctccaggataa 31326830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 12796851 - 12797016
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||||||||| || ||||||||||||| |||||| |||||||||||||| || ||||||||| ||| ||||||||| |||||||||||||||||    
T  12796851 tgttgtttttggatttccacactgttgtatttgaattttc-aaattctattatctgccgaagttgttattaggttgagtcacgaccagatcgctctcttt 12796949  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || |||      ||| ||||||||| |||||||||| |||| ||||||||||| ||||||| |||||| ||||    
T  12796950 aagacg------ttttgtggcactgcccaaaattgttcaagacagactatcaaccacgccgtctccaggataa 12797016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 74 - 240
Target Start/End: Complemental strand, 7738014 - 7737855
Alignment:
Q  74 ttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacg 173  Q
    ||||||||||  | |||||||||||||||||||| ||||||||||||| ||| ||||||||||||| ||||||||| ||||  ||||||||||||| | |    
T  7738014 ttttggatttctatactgttgtatttggattttc-aaattctattatccaccgaagttgttactaggttgagtcacgaccatgtcgctctctttaagaag 7737916  T
Q  174 tttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
          ||| ||||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||    
T  7737915 ------ttttgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataa 7737855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 35639166 - 35639001
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||||||||| |||||| |||||||||||||||| ||||||||||||||||| ||||||||||||  |||| |||| | ||| ||||||| |||    
T  35639166 tgttgtttttggatttccaaactattgtatttggattttc-aaattctattatctaccgaagttgttactaagttgaatcacgatcaggtcgctcttttt 35639068  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || |||      ||||||||||||| ||||||||||||||| |||  |||||| |||||||||||||| ||||    
T  35639067 aagacg------tttcgtggcactgcccaaaattgtgcaagacagcgtatcaaccacgccgcctccaggataa 35639001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 29677694 - 29677858
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||| | ||||||||||||| ||||||||| ||||| |||||||| ||    
T  29677694 tgttgtttttggattt-caaactgttgtatttggattt-ccaaattctattatctagcgaagttgttactaggttgagtcacgaccaggtcgctctcatt 29677791  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || ||       ||| ||||||||| | |||||||||||||||| |||||||| || ||||||| ||| ||||    
T  29677792 aagac------atttagtggcactgccaaaaattgtgcaaggcaaactatcaaccaagccgcctacaggataa 29677858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 30631505 - 30631670
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||||||||| ||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| ||||||||| |  || || ||||||||    
T  30631505 tgttgtttttggatttccaaactgttgtatttggattt-ccaagttctattatctaccgaagttgttactaggttgagtcacgattaggtcactctcttt 30631603  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || ||      ||||||||||| || | |||||||||||||  |||||||||| |||||| ||||||| ||||    
T  30631604 aaaac------ttttcgtggcattgccaaaaattgtgcaagaaagactatcaaccacgccacctccaggataa 30631670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 25497498 - 25497329
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaa---attctattatctaccaaagttgttactagattgagtcacaaccagatcgctctc 164  Q
    |||| ||||||||||| |||||| |||||||| ||||| | ||   ||||||||||||||| || |||||||||| ||||||||| ||||| ||||||||    
T  25497498 tgttgtttttggatttccaaactattgtatttagatttccaaactcattctattatctaccgaaattgttactaggttgagtcacgaccaggtcgctctc 25497399  T
Q  165 tttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||||| |||      ||||||  ||||| ||||| ||||||||| ||||||||||| |||||||||||||| ||||    
T  25497398 tttaagacg------tttcgtaacactgcccaaatttgtgcaagtcagactatcaaccacgccgcctccaggataa 25497329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 155
Target Start/End: Complemental strand, 15489883 - 15489797
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccag 155  Q
    |||| ||||||||||| |||  ||||||||| | |||||| ||||||||||||||||| ||||||||||||| ||||||||| |||||    
T  15489883 tgttgtttttggatttccaatatgttgtattagaattttc-aaattctattatctaccgaagttgttactaggttgagtcacgaccag 15489797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 118 - 235
Target Start/End: Complemental strand, 19578534 - 19578423
Alignment:
Q  118 tatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactat 217  Q
    |||||||| ||||||||| ||| ||||||||| ||||||||||||||||||| |||      ||| ||||||||  | |||||||||||||| |||||||    
T  19578534 tatctaccgaagttgttattaggttgagtcacgaccagatcgctctctttaagacg------ttttgtggcactacctaaaattgtgcaaggaagactat 19578441  T
Q  218 caatcacgccgcctccag 235  Q
    ||| || || ||||||||    
T  19578440 caaccatgctgcctccag 19578423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 21523784 - 21523735
Alignment:
Q  180 tttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgc 229  Q
    ||||||||||||| |||||||||||||||| |||||||||| ||||||||    
T  21523784 tttcgtggcactgcccaaaattgtgcaagggagactatcaaccacgccgc 21523735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 233
Target Start/End: Complemental strand, 40847712 - 40847606
Alignment:
Q  121 ctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaa 220  Q
    ||||| ||||||||||||||||||||||| ||||  ||| ||||||||| |||      ||| |||||||||  |||| |||||||||||| ||||||||    
T  40847712 ctaccgaagttgttactagattgagtcacgaccatgtcgttctctttaagacg------ttttgtggcactgttcaaagttgtgcaaggcaaactatcaa 40847619  T
Q  221 tcacgccgcctcc 233  Q
     |||||| |||||    
T  40847618 ccacgccacctcc 40847606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 20711358 - 20711408
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctatt 118  Q
    |||| ||||||||||| ||||||||||||||| | ||||||||||||||||    
T  20711358 tgttgtttttggatttacaaactgttgtattttggttttccaaattctatt 20711408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 40847780 - 40847742
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattt 105  Q
    ||||| ||||| |||||||||||||||||||||||||||    
T  40847780 ttgttgtttttagattttcaaactgttgtatttggattt 40847742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 160031 - 160075
Alignment:
Q  133 ttactagattgagtcacaaccagatcgctctctttaatacgtttc 177  Q
    ||||||| ||||| ||| ||||| |||||||||||||||||||||    
T  160031 ttactaggttgagacacgaccaggtcgctctctttaatacgtttc 160075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 7571388 - 7571222
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||    
T  7571388 ttgttgtttttggatttccaaactgttgtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctctt 7571290  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| |||      ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||    
T  7571289 taagacg------tttcgtggcactgcccaaaattgtgcaagacagactatcaatcacgccgcctccaggataa 7571222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 73 - 240
Target Start/End: Complemental strand, 758532 - 758372
Alignment:
Q  73 tttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatac 172  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||| ||    
T  758532 tttttggatttccaaactgttgtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccagatcgctctctttaagac 758434  T
Q  173 gtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    |      ||||||||||||  ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  758433 g------tttcgtggcactacccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 758372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 67 - 240
Target Start/End: Original strand, 3672509 - 3672675
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||    
T  3672509 ttgttgtttttggatttccaaactgttgtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctctt 3672607  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| |||      |||| |||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  3672608 taagacg------tttcatggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 3672675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 67 - 240
Target Start/End: Original strand, 3692541 - 3692707
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||    
T  3692541 ttgttgtttttggatttccaaactgttgtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctctt 3692639  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| |||      |||| |||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  3692640 taagacg------tttcatggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 3692707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 23666293 - 23666127
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| |||||| |||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||    
T  23666293 ttgttgtttttgaatttccaaactgttgtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctctt 23666195  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| |||      ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  23666194 taagacg------tttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 23666127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 24038541 - 24038375
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| |||||| |||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||    
T  24038541 ttgttgtttttgaatttccaaactgttgtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctctt 24038443  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| |||      ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  24038442 taagacg------tttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 24038375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 39775897 - 39775732
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||| |||||| ||||||||| ||||| |||||||||||    
T  39775897 tgttgtttttggatttccaaactgttgtatttggattt-ccaaattctattatctaccgaagttgctactaggttgagtcacgaccaggtcgctctcttt 39775799  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || |||      ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  39775798 aagacg------tttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 39775732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 18467149 - 18467314
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| |||||| |||| ||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||| ||||| |||||||||||    
T  18467149 tgttgtttttgaatttccaaactgatgtatttggattttc-aaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctcttt 18467247  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || |||      ||||||||||||| |||||||||||||||||||||||| || |||||||||||||| ||||    
T  18467248 aagacg------tttcgtggcactgcccaaaattgtgcaaggcagactattaaccacgccgcctccaggataa 18467314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 73 - 240
Target Start/End: Complemental strand, 49971588 - 49971428
Alignment:
Q  73 tttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatac 172  Q
    ||||||||||| ||||||||||||||||||||| |||| || ||||||||||| ||||||||||||| ||||||||| ||||| ||| ||||||||| ||    
T  49971588 tttttggatttccaaactgttgtatttggattt-ccaagttttattatctaccgaagttgttactaggttgagtcacgaccaggtcgatctctttaagac 49971490  T
Q  173 gtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    |      ||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||    
T  49971489 g------tttcgtggcactatccaaaattgtgcaaggcagactatcaatcacgccgcctccaggataa 49971428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 74 - 240
Target Start/End: Original strand, 8883100 - 8883259
Alignment:
Q  74 ttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacg 173  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| | ||||||| ||||| ||||||||||||| |||    
T  8883100 ttttggatttccaaactgttgtatttggattttc-aaattctattatctaccgaagttgttactaggtcgagtcacgaccaggtcgctctctttaagacg 8883198  T
Q  174 tttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
          ||||||||||||| ||||||||||||||| ||||||||||| ||||| |||||||| ||||    
T  8883199 ------tttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgctgcctccaggataa 8883259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 73 - 232
Target Start/End: Original strand, 3033573 - 3033725
Alignment:
Q  73 tttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatac 172  Q
    ||||||||||| |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||||| ||    
T  3033573 tttttggatttccaaactgtagtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctctttaagac 3033671  T
Q  173 gtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctc 232  Q
    |      |||| |||||||| ||||||||||||||||||||||||||| ||| |||||||    
T  3033672 g------tttcatggcactgcccaaaattgtgcaaggcagactatcaaccacaccgcctc 3033725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 73 - 240
Target Start/End: Complemental strand, 12966037 - 12965877
Alignment:
Q  73 tttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatac 172  Q
    |||||| |||||||||| ||||||||||| ||| ||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||    
T  12966037 tttttgaattttcaaaccgttgtatttgggttt-ccaaattctatgatctaccgaagttgttactagattgagtcacaaccaggtcgctctctttaagac 12965939  T
Q  173 gtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    |      |||  |||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||    
T  12965938 g------ttttatggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataa 12965877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 67 - 240
Target Start/End: Original strand, 3418917 - 3419084
Alignment:
Q  67 ttgttatttttgg-attttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctct 165  Q
    ||||| ||||||| |||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||  |||||||||    
T  3418917 ttgttgtttttggtatttccaaactgttgtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaagtcgctctct 3419015  T
Q  166 ttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    |||| |||      ||||||||||||| ||||||||||||||||||||||||||| |||||| ||| ||| ||||    
T  3419016 ttaagacg------tttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccaccttcaggataa 3419084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 74 - 240
Target Start/End: Original strand, 8887860 - 8888019
Alignment:
Q  74 ttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacg 173  Q
    |||||||||| |||||||||||||||| |||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||||| |||    
T  8887860 ttttggatttccaaactgttgtatttgaattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacg 8887958  T
Q  174 tttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| |||      |||||| ||||||||||||||| |||| |||||| |||||||||||||| ||||    
T  8887959 ttttgtt------gcactgtccaaaattgtgcaagacagattatcaaccacgccgcctccaggataa 8888019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 14438864 - 14438699
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||||||||  ||||||||||||||||||||| |||| |||||||||||||| ||||||||||||| ||||||||| ||||| |||| ||||||    
T  14438864 tgttgtttttggattcccaaactgttgtatttggattt-ccaagttctattatctaccgaagttgttactaggttgagtcacgaccaggtcgccctcttt 14438766  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || |||      ||||||||||||  ||||||||||||||||||||| ||||| |||||||||||||| ||||    
T  14438765 aagacg------tttcgtggcactacccaaaattgtgcaaggcagacaatcaaccacgccgcctccaggataa 14438699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 29350164 - 29350329
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||  ||||| |||||    
T  29350164 tgttgtttttggatttccaaactgttgtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccatgtcgctttcttt 29350262  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || |||      ||||||||||||| ||||||||||||||||||||| ||| | || ||||||||||| ||||    
T  29350263 aagacg------tttcgtggcactgcccaaaattgtgcaaggcagaccatctaccatgccgcctccaggataa 29350329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 67 - 234
Target Start/End: Original strand, 20519977 - 20520137
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| |||| | |||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||| ||||||||| ||||| || |||||||    
T  20519977 ttgttgttttcgaattttcaaactgttgtatttggattt-ccaaattctattatctagcgaagttgttactaggttgagtcacgaccaggtcactctctt 20520075  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctcca 234  Q
    ||| |||      ||||||||||||| |||| ||||||||||| |||||||||| |||||||||||||    
T  20520076 taagacg------tttcgtggcactgcccaagattgtgcaagggagactatcaaccacgccgcctcca 20520137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 8069603 - 8069768
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctatt-atctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    |||| ||||||||||| ||||| ||||||||||||||| |||||||||||| ||||||| ||||||||||||| ||||||||| ||||| ||||||||||    
T  8069603 tgttgtttttggatttccaaacagttgtatttggattt-ccaaattctatttatctaccgaagttgttactaggttgagtcacgaccaggtcgctctctt 8069701  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| |||      ||||||||||||| || |||||||||||| ||||||||||| |||||||||||||| ||||    
T  8069702 taagacg------tttcgtggcactgtcc-aaattgtgcaagacagactatcaaccacgccgcctccaggataa 8069768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 73 - 232
Target Start/End: Original strand, 29715573 - 29715725
Alignment:
Q  73 tttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatac 172  Q
    ||||||||||| ||||||||||||||| ||||| ||||||||||||||||||| ||||||||| ||| ||||||||| ||||||||||||| ||||| ||    
T  29715573 tttttggatttccaaactgttgtatttagattt-ccaaattctattatctaccgaagttgttattaggttgagtcacgaccagatcgctctttttaagac 29715671  T
Q  173 gtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctc 232  Q
    |      ||||||| ||||| |||||||||||| ||| |||||||||| |||||||||||    
T  29715672 g------tttcgtgacactgtccaaaattgtgctaggaagactatcaaccacgccgcctc 29715725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 67 - 240
Target Start/End: Original strand, 18471931 - 18472096
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| |||||| ||||  |||||| ||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||    
T  18471931 ttgttgtttttgaatttctaaactgatgtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctctt 18472029  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||  |       | |||||||||||| | ||||||||||||||||||||||||| |||||||||||||| ||||    
T  18472030 tacga-------tgttcgtggcactgcctaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 18472096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 75 - 234
Target Start/End: Complemental strand, 3657402 - 3657250
Alignment:
Q  75 tttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgt 174  Q
    |||||||||||||||||||||||||| |||| | ||||||||||||||||| ||||||||||||  ||||||||| |  |||||||||||||||| |||     
T  3657402 tttggattttcaaactgttgtatttgaattt-ctaaattctattatctaccgaagttgttactatgttgagtcacgattagatcgctctctttaagacg- 3657305  T
Q  175 ttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctcca 234  Q
         |||||||||||||  |||||||||||||| ||||||||||| || ||| ||||||    
T  3657304 -----tttcgtggcactgttcaaaattgtgcaagacagactatcaaccatgccacctcca 3657250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 73 - 240
Target Start/End: Original strand, 55431244 - 55431404
Alignment:
Q  73 tttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatac 172  Q
    ||||||||||| ||||| ||||||||||||||| |||||||||||||||| |  ||||||||| ||| ||||||||| | ||| ||||||||||||| ||    
T  55431244 tttttggatttccaaacagttgtatttggattt-ccaaattctattatctgctgaagttgttattaggttgagtcacgatcaggtcgctctctttaagac 55431342  T
Q  173 gtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    |      ||||||| ||||| | |||||| |||||||||||||||||| |||||||||||||| ||||    
T  55431343 g------tttcgtgacactgtcaaaaattatgcaaggcagactatcaaccacgccgcctccaggataa 55431404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 90 - 240
Target Start/End: Complemental strand, 32474825 - 32474684
Alignment:
Q  90 tgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggca 189  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||| ||| ||||| ||||||||  ||| |||      ||||||||||    
T  32474825 tgttgtttttggattt-ccaaattctattatctaccgaagttgttactagattgagccacgaccaggtcgctctc--taagacg------tttcgtggca 32474735  T
Q  190 ctgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| ||||||||||||||| ||||||||||| ||||||| |||||| ||||    
T  32474734 ctgcccaaaattgtgcaagacagactatcaaccacgccgtctccaggataa 32474684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 74 - 179
Target Start/End: Original strand, 27708808 - 27708912
Alignment:
Q  74 ttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacg 173  Q
    |||| ||||| ||||||||||||||||||||| |||||||||||||| |||| ||||||||||||| ||||||||| ||||| ||| ||||||||| |||    
T  27708808 tttttgatttccaaactgttgtatttggattt-ccaaattctattatataccgaagttgttactaggttgagtcacgaccaggtcgttctctttaagacg 27708906  T
Q  174 tttcgt 179  Q
    ||||||    
T  27708907 tttcgt 27708912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 23661620 - 23661468
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| |||||| |||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||          
T  23661620 ttgttgtttttgaatttccaaactgttgtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgc------ 23661528  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
                  |||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  23661527 --------------ttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 23661468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 67 - 176
Target Start/End: Complemental strand, 2207877 - 2207769
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| |||||||||||| ||||||||||||||| |||||  |||||||||||| || | ||||||| ||||||||||||||| ||||| ||||||| ||    
T  2207877 ttgttgtttttggatttttaaactgttgtatttgaattttt-aaattctattatttatcgaagttgtcactagattgagtcacgaccaggtcgctctttt 2207779  T
Q  167 taatacgttt 176  Q
    ||| ||||||    
T  2207778 taagacgttt 2207769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 240
Target Start/End: Complemental strand, 12112761 - 12112645
Alignment:
Q  118 tatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactat 217  Q
    |||||||| ||||||||||||| |||| |||| || || ||||||||||||| |||||||||      ||||||| ||||| ||||||||| ||||||||    
T  12112761 tatctaccgaagttgttactaggttgaatcacgactaggtcgctctctttaagacgtttcgt------ggcactgtccaaagttgtgcaagacagactat 12112668  T
Q  218 caatcacgccgcctccagaataa 240  Q
    ||| ||| |||||||||| ||||    
T  12112667 caaccacaccgcctccaggataa 12112645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 232
Target Start/End: Complemental strand, 12971744 - 12971645
Alignment:
Q  127 aagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgc 226  Q
    ||||||||||||| |||| |||| ||||| || |||||||||| |||||||||      |||| || ||||||||||||||| |||| ||||||||||||    
T  12971744 aagttgttactaggttgactcacgaccaggtctctctctttaagacgtttcgt------ggcattgcccaaaattgtgcaagacagattatcaatcacgc 12971651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 25726908 - 25726853
Alignment:
Q  122 taccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcg 178  Q
    |||||||||||| ||||||||||||||| ||||| ||||||||||||| ||||||||    
T  25726908 taccaaagttgt-actagattgagtcacgaccaggtcgctctctttaagacgtttcg 25726853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 27708965 - 27709025
Alignment:
Q  180 tttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    |||| |||||||| |||||||| ||||||| |||||||||| |||||||||||||| ||||    
T  27708965 tttcatggcactgcccaaaattatgcaaggtagactatcaaccacgccgcctccaggataa 27709025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 179
Target Start/End: Original strand, 26962058 - 26962096
Alignment:
Q  141 ttgagtcacaaccagatcgctctctttaatacgtttcgt 179  Q
    ||||||||| ||||||||||||||||||| |||||||||    
T  26962058 ttgagtcacgaccagatcgctctctttaagacgtttcgt 26962096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 16013650 - 16013693
Alignment:
Q  74 ttttggattttcaaactgttgtatttggattttccaaattctatt 118  Q
    |||||||||| |||||||||||||||||| |||||||| ||||||    
T  16013650 ttttggatttccaaactgttgtatttgga-tttccaaagtctatt 16013693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 220
Target Start/End: Original strand, 20507686 - 20507722
Alignment:
Q  184 gtggcactgaccaaaattgtgcaaggcagactatcaa 220  Q
    |||||||||  ||||||||||||||||||||||||||    
T  20507686 gtggcactgctcaaaattgtgcaaggcagactatcaa 20507722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 7030 - 7195
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| |||||||||||    
T  7030 tgttgtttttggatttccaaactgttgtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctcttt 7128  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || |||      ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  7129 aagacg------tttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 7195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 35)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 12102950 - 12103116
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||| || ||||| |||||||||||    
T  12102950 tgttgtttttggatttccaaactgttgtatttggatttcccaaattctattatctaccgaagttgttactaggttgagttacgaccaggtcgctctcttt 12103049  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || |||      ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  12103050 aagacg------tttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 12103116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 7451684 - 7451849
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||| ||||||||| ||||| |||||||||||    
T  7451684 tgttgtttttggattttcaaactgttgtatttgaattttc-aaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctcttt 7451782  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || |||      ||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||| ||||    
T  7451783 aagacg------tttcgtggcactgtccaaaattgtgcaaggcagactatcaaccacgctgcctccaggataa 7451849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 29168142 - 29167977
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||||||||| |||||||||||||||| |||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| |||||||||||    
T  29168142 tgttgtttttggatttccaaactgttgtatttgaattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctcttt 29168044  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || |||      ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  29168043 aagacg------tttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 29167977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 73 - 240
Target Start/End: Original strand, 36423568 - 36423728
Alignment:
Q  73 tttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatac 172  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||| ||||||| | ||||| ||||||||||||| ||    
T  36423568 tttttggattttcaaactgttgtatttggattt-ccaaaatctattatctaccgaagttgttactaggttgagtcgcgaccaggtcgctctctttaagac 36423666  T
Q  173 gtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    |      ||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  36423667 g------tttcgcggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccagaataa 36423728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 67 - 240
Target Start/End: Original strand, 556620 - 556786
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| ||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||    
T  556620 ttgttgtttttggatttccaaacagttgtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctctt 556718  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| |||      ||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  556719 taagacg------ttttgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 556786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 67 - 240
Target Start/End: Original strand, 561392 - 561558
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| ||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||    
T  561392 ttgttgtttttggatttccaaacagttgtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctctt 561490  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| |||      ||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  561491 taagacg------ttttgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 561558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 67 - 240
Target Start/End: Original strand, 39518335 - 39518501
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||| | ||||||||||||| ||||||||| ||||| ||||||||||    
T  39518335 ttgttgtttttggatttccaaactgttgtatttggattt-ccaaattctattatctatcgaagttgttactaggttgagtcacgaccaggtcgctctctt 39518433  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| |||      ||||||||||| | ||||||||||||| ||||||||||||| |||||||||||||| ||||    
T  39518434 taagacg------tttcgtggcaccgcccaaaattgtgcatggcagactatcaaccacgccgcctccaggataa 39518501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 67 - 240
Target Start/End: Original strand, 42001359 - 42001525
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| ||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||    
T  42001359 ttgttgtttttggatttccaaacagttgtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctctt 42001457  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| |||      ||||||||||||| ||||||||||| ||| ||||||||||| |||||||||||||| ||||    
T  42001458 taagacg------tttcgtggcactgcccaaaattgtgtaagacagactatcaaccacgccgcctccaggataa 42001525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 64 - 240
Target Start/End: Complemental strand, 6514773 - 6514605
Alignment:
Q  64 atcttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctct 163  Q
    |||||||| |||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||  || ||||    
T  6514773 atcttgttgtttttg-attttaaaactgttgtatttggattt-ccaaattctattatctaccaaagttgttactaggttgagtcacgaccaagtcactct 6514676  T
Q  164 ctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    |||||| |||      ||||||||||||| |||||||| |||||||||||||||||| |||||||||||||| ||||    
T  6514675 ctttaagacg------tttcgtggcactgcccaaaattttgcaaggcagactatcaaccacgccgcctccaggataa 6514605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 12045309 - 12045143
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||||||||| ||||||||||||||| | ||||||||||||||||||||||| ||||||||||||| ||||||||| ||||| |||| ||||||    
T  12045309 tgttgtttttggatttccaaactgttgtattttggttttccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgccctcttt 12045210  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || |||      ||||||||||||| ||||||||||||||| ||||||||| | |||||||||||||| ||||    
T  12045209 aagacg------tttcgtggcactgcccaaaattgtgcaagacagactatcgaccacgccgcctccaggataa 12045143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 26667198 - 26667363
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||| ||||| |||||| ||||||||||| || ||||||||||||||||||| ||||||||||||| ||||||||| ||||| |||||||||||    
T  26667198 tgttgtttttagatttccaaactattgtatttggagtt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctcttt 26667296  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || |||      ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  26667297 aagacg------tttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 26667363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 26938795 - 26938960
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||| ||||| |||||| ||||||||||| || ||||||||||||||||||| ||||||||||||| ||||||||| ||||| |||||||||||    
T  26938795 tgttgtttttagatttccaaactattgtatttggagtt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctcttt 26938893  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || |||      ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  26938894 aagacg------tttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 26938960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 70 - 240
Target Start/End: Original strand, 36428637 - 36428800
Alignment:
Q  70 ttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaa 169  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||||||| | ||||||||||||| ||||||||| ||||| |||||||||||||    
T  36428637 ttatttttggatttccaaactgttgtatttggattt-ccaaattctattatctaacgaagttgttactaggttgagtcacgaccaggtcgctctctttaa 36428735  T
Q  170 tacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
     |||      ||| | || |||| ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  36428736 gacg------ttttgcggaactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 36428800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 67 - 240
Target Start/End: Original strand, 41996590 - 41996756
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| ||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| | ||||||||    
T  41996590 ttgttgtttttggatttccaaacagttgtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggttgctctctt 41996688  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| |||      ||||||||||||| ||||||||||| ||| ||||||||||| |||||||||||||| ||||    
T  41996689 taagacg------tttcgtggcactgcccaaaattgtgtaagacagactatcaaccacgccgcctccaggataa 41996756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 37248964 - 37248799
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||||||||| ||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| |||||||||||    
T  37248964 tgttgtttttggatttccaaactgttatatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctcttt 37248866  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || ||       ||||||||||||  | ||||||||||||||||||||||||| |||||||||||||| ||||    
T  37248865 aagac------atttcgtggcactacctaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 37248799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 12502070 - 12501903
Alignment:
Q  67 ttgttatttttggattttcaaactgtt-gtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctct 165  Q
    ||||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||  ||||||||||||| ||||||||  ||||| |||||||||    
T  12502070 ttgttgtttttggattttcaaactgttcgtatttggattt-ccaaattctattatctactgaagttgttactaggttgagtcatgaccaggtcgctctct 12501972  T
Q  166 ttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    |||| |||      ||||||||||||| ||||||||||||||  ||||||||||| |||||||||||||| ||||    
T  12501971 ttaagacg------tttcgtggcactgcccaaaattgtgcaaaacagactatcaaccacgccgcctccaggataa 12501903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 67 - 240
Target Start/End: Original strand, 39522973 - 39523140
Alignment:
Q  67 ttgttatttttggattttcaaactgtt-gtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctct 165  Q
    ||||| ||||||||||| ||||||||| |||||||||||| ||||||||||||||||| | ||||||||||||| ||||||||| ||||| |||||||||    
T  39522973 ttgttgtttttggatttccaaactgttagtatttggattt-ccaaattctattatctatcgaagttgttactaggttgagtcacgaccaggtcgctctct 39523071  T
Q  166 ttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    |||| |||      ||||||||||| | ||||||||||||||| ||||||||||| |||||||||||||| ||||    
T  39523072 ttaagacg------tttcgtggcaccgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataa 39523140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 90 - 240
Target Start/End: Complemental strand, 36942412 - 36942269
Alignment:
Q  90 tgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggca 189  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||||| |||      |||| |||||    
T  36942412 tgttgtttttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacg------tttcatggca 36942320  T
Q  190 ctgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  36942319 ctgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 36942269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 10759992 - 10759824
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaa---attctattatctaccaaagttgttactagattgagtcacaaccagatcgctctc 164  Q
    |||| ||||||||||| ||||||||||||||||||||| | ||   ||||||||||||||| ||||||||||||| ||||||||| ||||| |||||||     
T  10759992 tgttgtttttggatttccaaactgttgtatttggatttccaaattcattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctct- 10759894  T
Q  165 tttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||||| |||      ||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  10759893 tttaagacg------ttttgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 10759824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 68 - 232
Target Start/End: Original strand, 3665857 - 3666015
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||||||||| ||||||||||||||| | |||| ||||||||||| |||||| ||||||||||||| ||||||||| || || ||||||||||     
T  3665857 tgttgtttttggatttccaaactgttgtattttggtttttcaaattctattttctaccgaagttgttactaggttgagtcacgactaggtcgctctcttc 3665956  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctc 232  Q
    || |||      ||||||||||||| ||||||||||||||||||||||||||| |||||| ||||    
T  3665957 aagacg------tttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccacctc 3666015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 37652999 - 37652834
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||||||||| |||| |||||||||||||||| ||||||||||||||||||| ||||||||| ||| ||||||||| | ||| |||||||||||    
T  37652999 tgttgtttttggatttccaaattgttgtatttggattt-ccaaattctattatctaccgaagttgttattaggttgagtcacgatcaggtcgctctcttt 37652901  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || |||      ||||||| || || ||||||||||||||||||||||||||| |||||| ||||||| ||||    
T  37652900 aagacg------tttcgtgacattgtccaaaattgtgcaaggcagactatcaaccacgccacctccaggataa 37652834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 41587329 - 41587164
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| |||||||||||  ||||||||||||||| |||||| ||||||||||||||||| ||||||||||||| ||||||||| ||||| | |||||||||    
T  41587329 tgttgtttttggatttctaaactgttgtatttgaattttc-aaattctattatctaccgaagttgttactagtttgagtcacgaccaggttgctctcttt 41587231  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || |||      ||||||| |||||  |||||||||||||| ||||||||||| |||||||||||||| ||||    
T  41587230 aagacg------tttcgtgacactgttcaaaattgtgcaagacagactatcaaccacgccgcctccaggataa 41587164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 90 - 240
Target Start/End: Complemental strand, 36937658 - 36937515
Alignment:
Q  90 tgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggca 189  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||||| ||| ||||||||| ||||| ||||||||||||| |||      |||| |||||    
T  36937658 tgttgtttttggattt-ccaaattctattatctaccgaagttgttattaggttgagtcacgaccaggtcgctctctttaagacg------tttcatggca 36937566  T
Q  190 ctgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  36937565 ctgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 36937515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 74 - 240
Target Start/End: Complemental strand, 6155582 - 6155423
Alignment:
Q  74 ttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacg 173  Q
    |||||| ||| ||||||||||||||||||||| ||||||||||||||||||| || |||||||||| ||||||||| | ||| ||||||||||||| |||    
T  6155582 ttttggttttccaaactgttgtatttggattt-ccaaattctattatctaccgaaattgttactaggttgagtcacgatcaggtcgctctctttaagacg 6155484  T
Q  174 tttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
          ||||||||||||| |||||||| | |||| ||||||||||| ||| |||||||||| ||||    
T  6155483 ------tttcgtggcactgtccaaaattttacaagacagactatcaaccacaccgcctccaggataa 6155423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 66 - 240
Target Start/End: Complemental strand, 35680049 - 35679879
Alignment:
Q  66 cttgttatttttggattttcaaactgttgtatttggattttccaaattc----tattatctaccaaagttgttactagattgagtcacaaccagatcgct 161  Q
    |||||| |||||||||||||||| |||||||||||||||| ||||||||    ||||||||||| ||| ||||||||| ||||||||   | || |||||    
T  35680049 cttgttgtttttggattttcaaattgttgtatttggattt-ccaaattcattatattatctaccgaagctgttactaggttgagtcatggc-aggtcgct 35679952  T
Q  162 ctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    |||||||| |||||||||      ||||||| | ||||||||||||||||||||||||| |||||||||||||| ||||    
T  35679951 ctctttaagacgtttcgt------ggcactgtcaaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 35679879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 75 - 240
Target Start/End: Original strand, 40147828 - 40147986
Alignment:
Q  75 tttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgt 174  Q
    |||| |||| |||||| |||||||||||||| ||||||||||||||||| | ||||||||| ||| ||||||||  | ||| ||||||||||||| | |     
T  40147828 tttgaatttccaaactattgtatttggattt-ccaaattctattatctatcgaagttgttattaggttgagtcatgatcaggtcgctctctttaagatg- 40147925  T
Q  175 ttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
         ||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||    
T  40147926 -----tttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataa 40147986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 73 - 240
Target Start/End: Complemental strand, 11981443 - 11981284
Alignment:
Q  73 tttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattga-gtcacaaccagatcgctctctttaata 171  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||| ||||  | |  ||||| ||||| ||||||| |    
T  11981443 tttttggattttcaaactgttgtagttggattt-ccaaattctattatctaccgaagttgttactaggttgattttatgaccaggtcgctttctttaaga 11981345  T
Q  172 cgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||      ||| ||||||||| ||||||||||||||| ||||  ||||| |||||||||||||||||||    
T  11981344 cg------ttttgtggcactgcccaaaattgtgcaagacaga--atcaaccacgccgcctccagaataa 11981284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 12042102 - 12041936
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagat--tgagtcacaaccagatcgctctc 164  Q
    ||||| ||||||||||||||||||||  |||||||||||| |||||| | ||||||||  ||||||||||||| |  |||||||| ||||| ||| ||||    
T  12042102 ttgttgtttttggattttcaaactgt--tatttggatttt-caaattatgttatctactgaagttgttactaggtcatgagtcacgaccaggtcgttctc 12042006  T
Q  165 tttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||||| |||      ||||||||||||| |||||| | ||||||||| |||||||| |||||||||||||| ||||    
T  12042005 tttaagacg------tttcgtggcactgcccaaaaatatgcaaggcaaactatcaaccacgccgcctccaggataa 12041936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 234
Target Start/End: Complemental strand, 20181233 - 20181073
Alignment:
Q  68 tgttatttttggattttc-aaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    |||| ||||||||||||  |||| ||||||||||||||| ||||||||||||||||||  || |||||| ||| ||||||||| ||||| || |||||||    
T  20181233 tgttgtttttggattttttaaaccgttgtatttggattt-ccaaattctattatctactgaaattgttattaggttgagtcacgaccaggtcactctctt 20181135  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctcca 234  Q
    ||| |||      |||||||||| || |||||||| |||||| |||||||| || |||||| ||||||    
T  20181134 taagacg------tttcgtggcattgtccaaaattatgcaagacagactattaaccacgccacctcca 20181073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 133
Target Start/End: Complemental strand, 37550170 - 37550106
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgt 133  Q
    |||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||    
T  37550170 tgttgtttttggattttcaaattgttgtatttgga-tttccaaattctattatctaccgaagttgt 37550106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 141 - 240
Target Start/End: Complemental strand, 32461646 - 32461553
Alignment:
Q  141 ttgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||||||||| ||||| ||||||||||||| |||||| ||      ||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||    
T  32461646 ttgagtcacgaccaggtcgctctctttaagacgttttgt------ggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataa 32461553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 220
Target Start/End: Complemental strand, 12102950 - 12102855
Alignment:
Q  119 atctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatc 218  Q
    ||||||| ||||||||||||| ||||||||| || || ||||||||||||| ||      |||| ||||||||| |||||||||||||||| ||||||||    
T  12102950 atctaccgaagttgttactaggttgagtcacgactaggtcgctctctttaagac------tttttgtggcactggccaaaattgtgcaaggaagactatc 12102857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 241
Target Start/End: Complemental strand, 15414992 - 15414884
Alignment:
Q  127 aagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgc 226  Q
    ||||||||||| | ||||||||| || ||| ||||||||||||      ||||||| ||||||||| |||||||||||  ||||||| |||||| |||||    
T  15414992 aagttgttacttggttgagtcacgactagaacgctctctttaag-----tcgtttt-gtggcactgcccaaaattgtgtgaggcagaatatcaaccacgc 15414899  T
Q  227 cgcctccagaataat 241  Q
    ||||||||| |||||    
T  15414898 cgcctccaggataat 15414884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 194 - 240
Target Start/End: Complemental strand, 37550082 - 37550036
Alignment:
Q  194 ccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||||||||||||||||||||||||||| |||||| ||||||| ||||    
T  37550082 ccaaaattgtgcaaggcagactatcaaccacgccacctccaggataa 37550036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 16116313 - 16116260
Alignment:
Q  180 tttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctcc 233  Q
    ||||||| ||||| ||||||||||||||| || |||||||| |||||| |||||    
T  16116313 tttcgtgacactgcccaaaattgtgcaagacaaactatcaaccacgccacctcc 16116260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 10056 - 9891
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| |||||||||||    
T  10056 tgttgtttttggatttccaaacagttgtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctcttt 9958  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || |||      ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  9957 aagacg------tttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 9891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 4000 - 4165
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| |||||||||||    
T  4000 tgttgtttttggatttccaaactgttgtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctcttt 4098  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || ||       ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  4099 aagac------atttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 4165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 149
Target Start/End: Complemental strand, 444102 - 444021
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcac 149  Q
    ||||| |||||||||||| ||||| ||||||||| |||||| |||||||||||| |||| ||||||||||||| |||| ||||    
T  444102 ttgttgtttttggatttttaaactcttgtatttgtattttc-aaattctattatttaccgaagttgttactaggttgaatcac 444021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 444007 - 443960
Alignment:
Q  180 tttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccg 228  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||||    
T  444007 tttcgtggcactg-ccaaaattgtgcaaggcagactatcaaccacgccg 443960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 13522163 - 13521996
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| ||||||||||||||||||||||||||| | ||||||||||||| || |||||| ||||||||||||| ||||||||| ||||| ||||||||||    
T  13522163 ttgttgtttttggattttcaaactgttgtattttggttttccaaattctgttttctaccgaagttgttactaggttgagtcacgaccaggtcgctctctt 13522064  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| |||      ||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||    
T  13522063 taagacg------tttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataa 13521996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 67 - 240
Target Start/End: Original strand, 31273446 - 31273612
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| |||||| |||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||    
T  31273446 ttgttgtttttgaatttccaaactgttgtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctctt 31273544  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| |||      ||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||    
T  31273545 taagacg------tttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataa 31273612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 73 - 240
Target Start/End: Original strand, 31268965 - 31269125
Alignment:
Q  73 tttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatac 172  Q
    |||||| |||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||||| ||    
T  31268965 tttttgaatttccaaactgttgtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctctttaagac 31269063  T
Q  173 gtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    |      ||||||||||||| | ||||||||||||||||||||||||| |||||||||||||| ||||    
T  31269064 g------tttcgtggcactgcctaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 31269125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 37264734 - 37264568
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| |||||| |||| ||||||||||||||||||||| ||||||||||||||||| | ||||||||||||| ||||||||| ||||| ||||||||||    
T  37264734 ttgttgtttttgaatttccaaactgttgtatttggattt-ccaaattctattatctatcgaagttgttactaggttgagtcacgaccaggtcgctctctt 37264636  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| |||      ||||||||||||| |||||||| |||||||||||||||||| |||||||||||||| ||||    
T  37264635 taagacg------tttcgtggcactgcccaaaattatgcaaggcagactatcaaccacgccgcctccaggataa 37264568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 67 - 240
Target Start/End: Original strand, 19106544 - 19106710
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| |||||||||||||||| || ||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||| ||||    
T  19106544 ttgttgtttttggattttcaaattgctgtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacaagcagatcgctttctt 19106642  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| |||      |||| | |||||| ||||||||||||||||| ||||||||| |||| ||||||||||||||    
T  19106643 taagacg------tttcatagcactgcccaaaattgtgcaaggctgactatcaaccacgtcgcctccagaataa 19106710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 37260047 - 37259881
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| |||||| |||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||| ||||    
T  37260047 ttgttgtttttgaatttccaaactgttgtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctttctt 37259949  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| |||      ||||||||||||   |||||||||||||||||||||||||| |||||||||||||| ||||    
T  37259948 taagacg------tttcgtggcactactcaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 37259881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 5271587 - 5271423
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| ||||||||||| |||||||||  ||||| |||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||    
T  5271587 ttgttgtttttggatttccaaactgtt--atttgaattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctctt 5271491  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| |||      ||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||    
T  5271490 taagacg------tttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataa 5271423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 16420956 - 16421120
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||||||||| ||||||||||||||| ||||| |  |||||||||||||||| ||||||||||||| ||||||||| ||||| |||||||| ||    
T  16420956 tgttgtttttggatttccaaactgttgtatttagatttcc--aattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctcatt 16421053  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || ||       ||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||| ||||    
T  16421054 aagac------atttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctacaggataa 16421120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 32082260 - 32082095
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||| ||||||||| |||||||| |||| ||    
T  32082260 ttgttgtttttggatttccaaactgttgtatttggattt-ccaaattctattatcaaccgaagttgttactaggttgagtcacgaccagatcactctttt 32082162  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| ||       |||| |||||||| |||||||||||||||||| |||||||| |||||||||||||| ||||    
T  32082161 taagac------atttcatggcactgtccaaaattgtgcaaggca-actatcaaccacgccgcctccaggataa 32082095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 68 - 232
Target Start/End: Original strand, 8693637 - 8693794
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||| |||| | ||||||||||||| ||||||||| ||||| |||||||||||    
T  8693637 tgttgtttttggattttcaaactgttgtatttggattt-ccaaattctattgtctatcgaagttgttactaggttgagtcacgaccaggtcgctctcttt 8693735  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctc 232  Q
    || |||      ||||||||| ||  ||||||||||||||| || |||||||| |||||||||||    
T  8693736 aagacg------tttcgtggcgctacccaaaattgtgcaagacatactatcaaccacgccgcctc 8693794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 73 - 240
Target Start/End: Original strand, 51697844 - 51698008
Alignment:
Q  73 tttttggattttcaaactgttgtatttggattttccaa---attctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaa 169  Q
    |||||||||||||||||| |||||||||||||| | ||   ||||||||||||||| ||||||||||||| ||||||||| ||||||||||||| |||||    
T  51697844 tttttggattttcaaactattgtatttggatttccaaattcattctattatctaccgaagttgttactaggttgagtcacgaccagatcgctctttttaa 51697943  T
Q  170 tacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
     |||      |||| || |||||  |||||||||||||||||||||||||| |||||||||||||| ||||    
T  51697944 gacg------tttcatgacactgctcaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 51698008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 5928388 - 5928223
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||| ||||| |||||||||||||||||| |||| ||||||||||||||||| |||||||||| || ||||||||| ||||| |||||||||||    
T  5928388 tgttgtttttagatttccaaactgttgtatttggagtttc-aaattctattatctaccgaagttgttaccaggttgagtcacgaccaggtcgctctcttt 5928290  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || | |      ||| |||||||||  |||||||||||||||||||||||||| ||| |||||||||| ||||    
T  5928289 aagatg------tttagtggcactgctcaaaattgtgcaaggcagactatcaaccacaccgcctccaggataa 5928223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 8030645 - 8030480
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| |||||| ||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||| |||| |||||| ||| |||||||||||    
T  8030645 tgttgtttttgaattttcaaactgttgtatttgaattttc-aaattctattatctaccgaagttgttactaggttgaatcacaatcaggtcgctctcttt 8030547  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || |||      ||| ||||||||| |||||||||||||||  ||||||||||  |||| |||||||| ||||    
T  8030546 aagacg------ttttgtggcactgcccaaaattgtgcaagatagactatcaacaacgctgcctccaggataa 8030480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 88 - 240
Target Start/End: Original strand, 31765828 - 31765977
Alignment:
Q  88 actgttgtatttggattttccaaattctatta----tctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttc 183  Q
    |||||||| ||||||||| |||||||||||||    |||||| ||||||||||||| ||||||||||||||| || |||||||||| |||||||          
T  31765828 actgttgtttttggattt-ccaaattctattaattatctaccgaagttgttactaggttgagtcacaaccaggtcactctctttaagacgtttc------ 31765920  T
Q  184 gtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  31765921 gtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 31765977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 86 - 240
Target Start/End: Original strand, 13059354 - 13059501
Alignment:
Q  86 aaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgt 185  Q
    |||||||||||||||||||||| ||||||||||||||||| ||||| ||||||| ||||||||  ||||||||||||||||||| |||      ||||||    
T  13059354 aaactgttgtatttggattttc-aaattctattatctaccgaagttattactaggttgagtcatgaccagatcgctctctttaagacg------tttcgt 13059446  T
Q  186 ggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    |||||||   ||||||||||||| ||||||||||| ||| ||||||| |||||||    
T  13059447 ggcactgcataaaattgtgcaagacagactatcaaccactccgcctctagaataa 13059501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 12824065 - 12823899
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| ||||| |||||  |||||||||||||||||||| |||||||||||| |||||| ||||||||| ||| ||||||||  ||||| ||||||||||    
T  12824065 ttgttgttttttgatttctaaactgttgtatttggattt-ccaaattctattttctaccgaagttgttattaggttgagtcatgaccaggtcgctctctt 12823967  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| ||       ||||||||||||| ||||||||||||||| || |||||||| |||||||||||||| ||||    
T  12823966 taagac------atttcgtggcactgcccaaaattgtgcaagacaaactatcaaccacgccgcctccaggataa 12823899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 73 - 234
Target Start/End: Complemental strand, 33469137 - 33468983
Alignment:
Q  73 tttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatac 172  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||  ||||||||||||| ||||||||| || || ||| ||||||||| ||    
T  33469137 tttttggatttccaaactgttgtatttggattttc-aaattctattatctactgaagttgttactaggttgagtcacgactaggtcgttctctttaagac 33469039  T
Q  173 gtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctcca 234  Q
    |      ||| ||||||||| ||||| |||||||||||||||| |||| |||||| ||||||    
T  33469038 g------ttttgtggcactgcccaaagttgtgcaaggcagactgtcaaccacgccacctcca 33468983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 67 - 240
Target Start/End: Original strand, 55251646 - 55251810
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| ||||| ||||| ||||||||||||||||||||| |  ||||||||||||||   ||||||||||||| ||||||||| ||||| ||||||| ||    
T  55251646 ttgttgtttttcgatttccaaactgttgtatttggatttcc--aattctattatctattgaagttgttactaggttgagtcacgaccaggtcgctct-tt 55251742  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| |||      ||||||||||||| ||||||||||||||| ||||||||||| |||||| ||||||| ||||    
T  55251743 taagacg------tttcgtggcactgtccaaaattgtgcaagacagactatcaaccacgccacctccaggataa 55251810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 67 - 169
Target Start/End: Complemental strand, 32221267 - 32221166
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||| || |||||||||| ||||||||| ||||| ||||||||||    
T  32221267 ttgttgtttttggattttcaaattgttgtatttggattttc-aaattctattatctaccgaaattgttactaggttgagtcacgaccaggtcgctctctt 32221169  T
Q  167 taa 169  Q
    |||    
T  32221168 taa 32221166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 84 - 240
Target Start/End: Original strand, 47574566 - 47574716
Alignment:
Q  84 tcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttc 183  Q
    |||||||||||||||| ||||||||||||||||||||||||| || |||||| ||| ||||||||||| ||| ||||||||||||| |||      ||||    
T  47574566 tcaaactgttgtattttgattttccaaattctattatctaccgaatttgttattaggttgagtcacaatcaggtcgctctctttaagacg------tttc 47574659  T
Q  184 gtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
     || ||||  ||||||||||||||| || | ||||||||||||||| ||||| ||||    
T  47574660 ttgacactacccaaaattgtgcaagacaaaatatcaatcacgccgcatccaggataa 47574716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 19101903 - 19102068
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| |||||||||||  |||||||||||||||||||| ||||||||||||||||| ||||||||||||||| || |||||| || || || |||| |||    
T  19101903 tgttgtttttggatttataaactgttgtatttggattt-ccaaattctattatctatcaaagttgttactaggttaagtcacgacgaggtcactctgttt 19102001  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || |||      ||||||||||||   |||||||||||||  ||||||||||| |||| ||||||||| ||||    
T  19102002 aagacg------tttcgtggcactactcaaaattgtgcaaaacagactatcaaccacgtcgcctccaggataa 19102068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 104 - 240
Target Start/End: Complemental strand, 33463490 - 33463360
Alignment:
Q  104 tttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgt 203  Q
    |||||||||||||||||||| | ||||||||||||| ||||||||| ||||| ||||||||||||| |||      ||||||||||||| ||||| ||||    
T  33463490 tttccaaattctattatctatcgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacg------tttcgtggcactgtccaaagttgt 33463397  T
Q  204 gcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    |||||||||| | |||| | |||||||||||| ||||    
T  33463396 gcaaggcagattgtcaaccccgccgcctccaggataa 33463360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 74 - 219
Target Start/End: Original strand, 51696931 - 51697072
Alignment:
Q  74 ttttggattttcaaactgttgtatttggattttccaa---attctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaat 170  Q
    |||||||||| |||||| |||||||||||||||| ||   ||||||||||||| |||| |||||||||| ||||||||| ||||| |||||||| ||||     
T  51696931 ttttggatttccaaacttttgtatttggattttcaaattcattctattatctatcaaa-ttgttactaggttgagtcacgaccaggtcgctctccttaag 51697029  T
Q  171 acgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatca 219  Q
    |||      |||| |||||||| ||||||||||||||||||||||||||    
T  51697030 acg------tttcatggcactgcccaaaattgtgcaaggcagactatca 51697072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 127 - 240
Target Start/End: Complemental strand, 42758866 - 42758759
Alignment:
Q  127 aagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgc 226  Q
    ||||||||||||| ||||||||| ||||| ||||||||||||| | |||||||      ||||||| ||||||||||||||| ||||||||||| ||||     
T  42758866 aagttgttactaggttgagtcacgaccaggtcgctctctttaagatgtttcgt------ggcactgcccaaaattgtgcaagacagactatcaaccacgt 42758773  T
Q  227 cgcctccagaataa 240  Q
    ||||||||||||||    
T  42758772 cgcctccagaataa 42758759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 240
Target Start/End: Original strand, 12874514 - 12874630
Alignment:
Q  118 tatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactat 217  Q
    |||||||  ||||||||| ||| ||||||||||| ||||||||||||||||| ||  ||||      |||||||| | |||||||||||| |||||| ||    
T  12874514 tatctactgaagttgttattaggttgagtcacaatcagatcgctctctttaagacaattcg------tggcactgtctaaaattgtgcaaagcagaccat 12874607  T
Q  218 caatcacgccgcctccagaataa 240  Q
    |||||||||||||||||| ||||    
T  12874608 caatcacgccgcctccaggataa 12874630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 240
Target Start/End: Original strand, 12878214 - 12878330
Alignment:
Q  118 tatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactat 217  Q
    |||||||  ||||||||||||| ||||||||| | ||| ||||||||||||| |||||||||      | ||||   ||||||||||||| |||||||||    
T  12878214 tatctacggaagttgttactaggttgagtcacgatcaggtcgctctctttaagacgtttcgt------gacacttttcaaaattgtgcaaagcagactat 12878307  T
Q  218 caatcacgccgcctccagaataa 240  Q
    |||||||||| ||||||||||||    
T  12878308 caatcacgccacctccagaataa 12878330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 240
Target Start/End: Original strand, 47244192 - 47244339
Alignment:
Q  86 aaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgt 185  Q
    ||||||||||||||||| |||||||||| ||||||||| | ||||||||| ||| ||||||||| | ||| |||| |||||||| |||      ||||||    
T  47244192 aaactgttgtatttgga-tttccaaattatattatctatcgaagttgttagtaggttgagtcacgatcaggtcgccctctttaagacg------tttcgt 47244284  T
Q  186 ggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    |||||||  ||||||| |  |||  |||||||||| |||||||||||||| ||||    
T  47244285 ggcactgttcaaaattattgaagaaagactatcaaccacgccgcctccaggataa 47244339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 31729451 - 31729391
Alignment:
Q  180 tttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||||||||||||  ||||||||||||||||||||| |||||||||||||||||||| ||||    
T  31729451 tttcgtggcactacccaaaattgtgcaaggcagacaatcaatcacgccgcctccaggataa 31729391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 55810311 - 55810260
Alignment:
Q  73 tttttggattttcaaactgttgtatttggattttccaaattctattatctacc 125  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  55810311 tttttggattttcaaactgttgtatttgga-tttccaaattctattatctacc 55810260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 6070563 - 6070613
Alignment:
Q  119 atctaccaaagttgttactagattgagtcacaaccagatcgctctctttaa 169  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  6070563 atctaccaaagttgttactagattgagtcatgaccagatcgctctctttaa 6070613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 117
Target Start/End: Complemental strand, 8652179 - 8652129
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctat 117  Q
    ||||| ||||||||||| ||||||||||||||| |||||||||||||||||    
T  8652179 ttgttgtttttggatttccaaactgttgtattttgattttccaaattctat 8652129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 117
Target Start/End: Complemental strand, 8663986 - 8663936
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctat 117  Q
    ||||| ||||||||||| ||||||||||||||| |||||||||||||||||    
T  8663986 ttgttgtttttggatttccaaactgttgtattttgattttccaaattctat 8663936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 234
Target Start/End: Complemental strand, 13065888 - 13065778
Alignment:
Q  118 tatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactat 217  Q
    |||||||| ||||||||||||| ||||||||| || |  ||||||||||||| |||      |||| |||||||| ||||| ||||| |||| |||||||    
T  13065888 tatctaccgaagttgttactaggttgagtcacgactatgtcgctctctttaagacg------tttcatggcactgcccaaagttgtgaaagggagactat 13065795  T
Q  218 caatcacgccgcctcca 234  Q
    ||| ||||| |||||||    
T  13065794 caaccacgcagcctcca 13065778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 240
Target Start/End: Original strand, 2819818 - 2819935
Alignment:
Q  117 ttatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagacta 216  Q
    ||||||| | ||||||||||||||||||||||| ||||| ||| | ||||||| | |      |||||||| |||| |||||||||||||||| ||||||    
T  2819818 ttatctatcgaagttgttactagattgagtcacgaccaggtcgttttctttaagatg------tttcgtggtactgtccaaaattgtgcaaggtagacta 2819911  T
Q  217 tcaatcacgccgcctccagaataa 240  Q
    || | || ||||| ||||| ||||    
T  2819912 tctaccatgccgcgtccaggataa 2819935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 31729541 - 31729485
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctac 124  Q
    ||||| ||||||||||| ||||||| |||||||||| ||||||| |||||||||||||    
T  31729541 ttgttgtttttggatttccaaactgctgtatttgga-tttccaagttctattatctac 31729485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 48276807 - 48276653
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| |||||||||||| ||| ||||||||||||| |||||||||||    ||||||| ||||  ||||||| |||| |||| | ||| |||||||||||    
T  48276807 tgttctttttggatttttaaattgttgtatttgga-tttccaaattc----atctacccaagt--ttactaggttgaatcacgatcaggtcgctctcttt 48276715  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || |||||| |||      ||||||  |||||||||||||     |||||||| |||||||||||||| ||||    
T  48276714 aagacgttttgtt------gcactgttcaaaattgtgcaa-----actatcaaccacgccgcctccaggataa 48276653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 16953116 - 16953176
Alignment:
Q  180 tttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    |||||||| |||  ||||||||||||||||||||||||||| |||  ||||||||| ||||    
T  16953116 tttcgtggtactacccaaaattgtgcaaggcagactatcaaccacaacgcctccaggataa 16953176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 23093106 - 23093155
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctatt 118  Q
    ||||| ||||||||||  ||||||||||||||||| |||||||||||||||    
T  23093106 tgttagttttggatttcaaaactgttgtatttgga-tttccaaattctatt 23093155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 24490030 - 24490067
Alignment:
Q  141 ttgagtcacaaccagatcgctctctttaatacgtttcg 178  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  24490030 ttgagtcacgaccagatcgctctctttaagacgtttcg 24490067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 23192987 - 23192821
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||    
T  23192987 ttgttgtttttggattttcaaactgttgtgtttgg-ttttccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctctt 23192889  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| |||      ||||||||||||| |||||||||| |||||||||||||||| |||||| ||||||| ||||    
T  23192888 taagacg------tttcgtggcactgcccaaaattgtacaaggcagactatcaaccacgcctcctccaggataa 23192821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 19799182 - 19799017
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||| ||||||||| | |||||||||||||||    
T  19799182 tgttgtttttggattttcaaactgttgtatttggattttc-aaattctattatctatcgaagttgttactaggttgagtcacgatcagatcgctctcttt 19799084  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || |||      ||||||||||||  ||||||||||||||| ||||||||||| |||||||||||||| ||||    
T  19799083 aagacg------tttcgtggcactatccaaaattgtgcaagacagactatcaaccacgccgcctccaggataa 19799017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 67 - 232
Target Start/End: Complemental strand, 26927892 - 26927734
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||| ||||||||| || |  ||||||||||    
T  26927892 ttgttgtttttggattttcaaactgttgtatttggattttt-aaattctattatctaccgaagttgttactaggttgagtcacgactaagtcgctctctt 26927794  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctc 232  Q
    ||| |||      |||||||||| || ||||||||||||||||||||||||||| |||||||||||    
T  26927793 taagacg------tttcgtggcattgcccaaaattgtgcaaggcagactatcaaccacgccgcctc 26927734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 33301349 - 33301184
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||||||||| ||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||| |||| ||||| ||| |||||||    
T  33301349 tgttgtttttggatttccaatctgttgtatttggattt-ccaaattctattatctatcaaagttgttactagcttgaatcacgaccaggtcgttctcttt 33301251  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || |||      ||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||    
T  33301250 aagacg------tttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataa 33301184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 73 - 220
Target Start/End: Original strand, 3094045 - 3094185
Alignment:
Q  73 tttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatac 172  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||||| ||    
T  3094045 tttttggatttccaaactgttgtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctctttaagac 3094143  T
Q  173 gtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaa 220  Q
    |      |||| |||||||| |||||||||||||||||||||||||||    
T  3094144 g------tttcatggcactgcccaaaattgtgcaaggcagactatcaa 3094185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 67 - 233
Target Start/End: Complemental strand, 16649782 - 16649624
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||  ||||||||| ||||| ||||||||||    
T  16649782 ttgttgtttttggattttcaaactgttgtatttgaattt-ccaaattctattatctaccgaagttgttactaagttgagtcacgaccaggtcgctctctt 16649684  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctcc 233  Q
    ||| ||||||       ||||||||| |||||||||||||||  |||||||||| ||||||||||||    
T  16649683 taagacgttt-------gtggcactgtccaaaattgtgcaagatagactatcaaccacgccgcctcc 16649624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 67 - 232
Target Start/End: Original strand, 40165905 - 40166063
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| ||||| ||||||||||||||||||||||||||  ||| ||||||||||||||| ||||||||||||| ||||||||| ||||  ||||||||||    
T  40165905 ttgttgtttttagattttcaaactgttgtatttggatta-ccatattctattatctaccgaagttgttactaggttgagtcacgaccatgtcgctctctt 40166003  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctc 232  Q
    ||| |||      ||||||||||||| ||||||||||||||||||||||| |||  ||||||||||    
T  40166004 taagacg------tttcgtggcactgcccaaaattgtgcaaggcagactaacaacaacgccgcctc 40166063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 47455555 - 47455390
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||||||||| ||||| ||||||||||||||| ||||||||||||||| ||| ||||||||| ||| ||||||||| ||||| |||||||||||    
T  47455555 tgttgtttttggatttccaaacagttgtatttggattt-ccaaattctattatccaccgaagttgttattaggttgagtcacgaccaggtcgctctcttt 47455457  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || |||      |||||||||| || ||||||||||||||| |||| |||||| |||||||||||||| ||||    
T  47455456 aagacg------tttcgtggcaatgtccaaaattgtgcaagacagattatcaaccacgccgcctccaggataa 47455390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 67 - 234
Target Start/End: Complemental strand, 51041631 - 51041473
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| ||||||||||| ||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||  ||||||||| ||||| ||||||| ||    
T  51041631 ttgttgtttttggatttccaaactgatgtatttggattt-ccaaattctattatctaccgaagttgttactaagttgagtcacgaccaggtcgctct-tt 51041534  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctcca 234  Q
    ||| |||      ||||||||||||| || |||||||||||||||||||||||| |||||||||||||    
T  51041533 taagacg------tttcgtggcactg-cccaaattgtgcaaggcagactatcaaccacgccgcctcca 51041473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 67 - 207
Target Start/End: Original strand, 25855096 - 25855229
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| |||||| |||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||    
T  25855096 ttgttgtttttgaatttccaaactgttgtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctctt 25855194  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaa 207  Q
    ||| |||      ||||||||||||| ||||||||||||||    
T  25855195 taagacg------tttcgtggcactgcccaaaattgtgcaa 25855229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 67 - 234
Target Start/End: Complemental strand, 47451395 - 47451235
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| ||||||||||| ||||| ||||||||||||||| ||||||||||||||| ||| || || ||||||| ||||||||| ||||| ||||||||||    
T  47451395 ttgttgtttttggatttccaaacagttgtatttggattt-ccaaattctattatccaccgaaattattactaggttgagtcacgaccaggtcgctctctt 47451297  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctcca 234  Q
    ||| |||      |||| |||||||| | ||||||||||||| ||||||||||| |||||||||||||    
T  47451296 taagacg------tttcatggcactgccaaaaattgtgcaagacagactatcaaccacgccgcctcca 47451235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 73 - 234
Target Start/End: Original strand, 38620624 - 38620777
Alignment:
Q  73 tttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatac 172  Q
    |||||| |||||||||||||||||||||||||| ||||||| ||||||||||| ||||| ||| ||| ||||||| | |||||||| |||||||||| ||    
T  38620624 tttttgaattttcaaactgttgtatttggattt-ccaaattttattatctaccgaagttattattaggttgagtcgcgaccagatcactctctttaagac 38620722  T
Q  173 gtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctcca 234  Q
    |||||||       ||| || |||||||||||||||||||||||||||  ||||||||||||    
T  38620723 gtttcgt-------gcattgtccaaaattgtgcaaggcagactatcaactacgccgcctcca 38620777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 68 - 232
Target Start/End: Original strand, 10135382 - 10135539
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| |||||| |||| ||||||  ||||||||||||| |||| |||||||||||||| ||||||||||||| ||||||||| ||||| |||||||||||    
T  10135382 tgttgtttttgtatttccaaactcctgtatttggattt-ccaagttctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctcttt 10135480  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctc 232  Q
    || |||      ||||||||||||  | ||||||||||||||||||| ||||| |||||||||||    
T  10135481 aagacg------tttcgtggcactacctaaaattgtgcaaggcagacaatcaaccacgccgcctc 10135539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 67 - 240
Target Start/End: Original strand, 16035527 - 16035699
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctat------tatctaccaaagttgttactagattgagtcacaaccagatcgc 160  Q
    ||||| ||||||||||| ||||||||||||||||||||||| ||||||||       |||||||||||||||||||||| ||||||||| ||||| ||||    
T  16035527 ttgttgtttttggatttccaaactgttgtatttggattttc-aaattctaaaatgaatatctaccaaagttgttactaggttgagtcacgaccaggtcgc 16035625  T
Q  161 tctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
     |||||||| |||      ||||||||||||| ||||| ||||||||| |||| |||||| |||||||||||||| ||||    
T  16035626 cctctttaacacg------tttcgtggcactgtccaaagttgtgcaagacagattatcaaccacgccgcctccaggataa 16035699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 73 - 240
Target Start/End: Complemental strand, 18784713 - 18784553
Alignment:
Q  73 tttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatac 172  Q
    ||||||||||| ||||||||||||| | | ||||| |||||||||| |||| | ||||||||||||| ||||||||| | ||| ||||||| ||||| ||    
T  18784713 tttttggatttccaaactgttgtatgttggttttctaaattctattttctagcgaagttgttactaggttgagtcacgatcaggtcgctct-tttaagac 18784615  T
Q  173 gtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
     ||||||      ||||||| | ||||||||||||||||||||||||| |||||||||||||||||||    
T  18784614 atttcgt------ggcactgcctaaaattgtgcaaggcagactatcaaccacgccgcctccagaataa 18784553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 75 - 175
Target Start/End: Original strand, 16832034 - 16832133
Alignment:
Q  75 tttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgt 174  Q
    ||||||||| ||||| ||||||||||||||| ||||||||||||||||||  |||||||||||| |||||||||| ||||| ||||||||||||| ||||    
T  16832034 tttggatttccaaaccgttgtatttggattt-ccaaattctattatctacttaagttgttactatattgagtcacgaccaggtcgctctctttaagacgt 16832132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 39588536 - 39588371
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||||||||| ||||  ||||||||||||||| ||||||| ||||||| ||| || |||||||||| || |||||| | ||| |||||||||||    
T  39588536 tgttgtttttggatttccaaatagttgtatttggattt-ccaaattatattatccaccgaaattgttactaggttaagtcacgatcaggtcgctctcttt 39588438  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || |||      ||||||||||||| ||||||||||||||| ||||||||| | ||||||  |||||| ||||    
T  39588437 aagacg------tttcgtggcactgtccaaaattgtgcaagacagactatctaccacgcctactccaggataa 39588371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 232
Target Start/End: Original strand, 10140014 - 10140172
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| |||||| |||  ||||||  ||||||||||||||| | || |||||||||||| ||||||||||||| ||||||||| | ||| ||||||||||    
T  10140014 ttgttgtttttgtattcccaaactactgtatttggattttcaagat-ctattatctaccgaagttgttactaggttgagtcacgatcaggtcgctctctt 10140112  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctc 232  Q
    ||| |||      ||||||||||||   |||||||||||||||||||| ||||| |||||| ||||    
T  10140113 taacacg------tttcgtggcactactcaaaattgtgcaaggcagacaatcaaccacgccacctc 10140172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 68 - 149
Target Start/End: Original strand, 25843738 - 25843818
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcac 149  Q
    |||| |||||| |||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||    
T  25843738 tgttgtttttgaatttccaaactgttgtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcac 25843818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 118 - 240
Target Start/End: Original strand, 11806334 - 11806450
Alignment:
Q  118 tatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactat 217  Q
    |||||| | ||||||||| ||| ||||||||||||||||||||||||||||| | |      ||||||| |||||  |||| | || |||||||||||||    
T  11806334 tatctatcgaagttgttattaggttgagtcacaaccagatcgctctctttaagatg------tttcgtgacactgcgcaaagtggtacaaggcagactat 11806427  T
Q  218 caatcacgccgcctccagaataa 240  Q
    ||| |||||||||| ||||||||    
T  11806428 caaccacgccgccttcagaataa 11806450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 240
Target Start/End: Original strand, 8900229 - 8900345
Alignment:
Q  118 tatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactat 217  Q
    |||||||| ||||||||||||| ||||||||| |||| |||||||||||||| |||      ||| ||| ||||| | ||| ||||||||  || |||||    
T  8900229 tatctaccgaagttgttactaggttgagtcacgaccatatcgctctctttaaaacg------ttttgtgacactgtctaaagttgtgcaaaacatactat 8900322  T
Q  218 caatcacgccgcctccagaataa 240  Q
    ||||||| |||||||||| ||||    
T  8900323 caatcacaccgcctccaggataa 8900345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 228
Target Start/End: Original strand, 12259971 - 12260075
Alignment:
Q  118 tatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactat 217  Q
    |||||||  ||||||||||| | ||||| ||| ||||  ||||||||||||| |||||||||      | ||||| ||||||||||||||| ||||||||    
T  12259971 tatctactgaagttgttacttggttgagacacgaccatgtcgctctctttaagacgtttcgt------gacactgcccaaaattgtgcaagacagactat 12260064  T
Q  218 caatcacgccg 228  Q
    ||| |||||||    
T  12260065 caaccacgccg 12260075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 234
Target Start/End: Original strand, 5346652 - 5346748
Alignment:
Q  132 gttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcct 231  Q
    |||||||| |||||| |||| ||| ||| ||||||||| |||||| ||      ||||||| ||||| |||| |||  ||||||||||||||||||||||    
T  5346652 gttactaggttgagttacaatcaggtcgttctctttaaaacgttttgt------ggcactgtccaaatttgtacaatacagactatcaatcacgccgcct 5346745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 46696595 - 46696645
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctatt 118  Q
    ||||| ||||||||||||||||||||| ||||| || |||||||||||||||    
T  46696595 ttgttgtttttggattttcaaactgttttatttaga-tttccaaattctatt 46696645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Original strand, 12906186 - 12906235
Alignment:
Q  180 tttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcc 230  Q
    ||||||||||||| |||||||||||||| |||||||||||| |||| ||||    
T  12906186 tttcgtggcactgcccaaaattgtgcaa-gcagactatcaaccacgacgcc 12906235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 178
Target Start/End: Complemental strand, 5602521 - 5602484
Alignment:
Q  141 ttgagtcacaaccagatcgctctctttaatacgtttcg 178  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  5602521 ttgagtcacgaccagatcgctctctttaagacgtttcg 5602484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Complemental strand, 27761902 - 27761858
Alignment:
Q  180 tttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacg 225  Q
    ||||||||||||| |||||||||||||| |||||||||||| ||||    
T  27761902 tttcgtggcactgtccaaaattgtgcaa-gcagactatcaaccacg 27761858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 28434749 - 28434705
Alignment:
Q  73 tttttggattttcaaactgttgtatttggattttccaaattctatt 118  Q
    |||||||||||||||||| ||||||||| ||||| |||||||||||    
T  28434749 tttttggattttcaaactattgtatttgaatttt-caaattctatt 28434705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 2493881 - 2493822
Alignment:
Q  180 tttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||||||||||||| |||||||||||||| ||| |||||||| |||| |||| |||| ||||    
T  2493881 tttcgtggcactgcccaaaattgtgcaa-gcaaactatcaaccacggcgcccccaggataa 2493822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 94; Significance: 5e-46; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 80 - 240
Target Start/End: Complemental strand, 11570906 - 11570753
Alignment:
Q  80 attttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgt 179  Q
    |||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||| |||          
T  11570906 attttcaaactgttgtatttggattt-cgaaattctattatctaccgaagttgttactaggttgagtcacaaccaggtcgctctctttaagacg------ 11570814  T
Q  180 tttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||| ||||    
T  11570813 tttcgtggcactgcccaaaattgtgcaaggcagacaatcaaccacgccgcctccaggataa 11570753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 6408030 - 6407864
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| | ||| ||||||||||    
T  6408030 ttgttgtttttggatttccaaactgttgtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgatcaggtcgctctctt 6407932  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
     || |||      ||||||||||||| |||||||||| ||| |||||||||||| |||||||||||||| ||||    
T  6407931 gaagacg------tttcgtggcactgcccaaaattgtacaaagcagactatcaaccacgccgcctccaggataa 6407864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 67 - 240
Target Start/End: Original strand, 21308959 - 21309122
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| ||||||||||||||||||||   |||||||||| ||||||||||||||||| | ||||||||||||| ||||||||| |||| |||||||||||    
T  21308959 ttgttgtttttggattttcaaactgt---atttggattt-ccaaattctattatctatcgaagttgttactaggttgagtcactaccatatcgctctctt 21309054  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| |||      |||| |||||||| |||||||||||||| |||||||||||| |||||||||||||| ||||    
T  21309055 taagacg------tttcatggcactgcccaaaattgtgcaatgcagactatcaaccacgccgcctccaggataa 21309122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 2700277 - 2700110
Alignment:
Q  67 ttgttatttttggattttcaaactgtt-gtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctct 165  Q
    ||||| |||||| |||||||||| ||| |||||||||||||| |||||||| |||||||| ||||||||||||| ||||||||| |||||||||||||||    
T  2700277 ttgttgtttttgaattttcaaaccgttagtatttggattttc-aaattctactatctaccgaagttgttactaggttgagtcacgaccagatcgctctct 2700179  T
Q  166 ttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    |||| |||      |||||||||||||  |||||||||||||| ||||||||||| |||||||| ||||| ||||    
T  2700178 ttaagacg------tttcgtggcactgttcaaaattgtgcaagacagactatcaaccacgccgcttccaggataa 2700110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 68 - 220
Target Start/End: Original strand, 19674239 - 19674384
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||| ||||||||| ||||| || ||||||||    
T  19674239 tgttgtttttggattttcaaactgttgtatttggattttc-aaattctattatttaccgaagttgttactaggttgagtcacgaccaggtcactctcttt 19674337  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaa 220  Q
    || |||      |||| |||||||| ||||||||||||||| |||||||||||    
T  19674338 aagacg------tttcatggcactgcccaaaattgtgcaagacagactatcaa 19674384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 73 - 240
Target Start/End: Original strand, 12688902 - 12689062
Alignment:
Q  73 tttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatac 172  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||| ||||||||  ||||| || |||||||||| ||    
T  12688902 tttttggattttcaaactgttgtatttggattt-ccaaattctattatccaccgaagttgttactaggttgagtcatgaccaggtcactctctttaagac 12689000  T
Q  173 gtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    |      ||| |||  |||| ||||||||||||||||||||||||||| ||||||| |||||| ||||    
T  12689001 g------ttttgtgatactgcccaaaattgtgcaaggcagactatcaaccacgccgtctccaggataa 12689062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 67 - 240
Target Start/End: Original strand, 8747707 - 8747873
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||   ||||||||||||| ||||||||| ||||| ||||||||||    
T  8747707 ttgttgtttttggatttacaaactgttgtatttggattt-ccaaattctattatctattgaagttgttactaggttgagtcacgaccaggtcgctctctt 8747805  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| |||      || |||| ||||| ||||||||||||||| ||| |||||||  ||||||||||||| ||||    
T  8747806 taagacg------ttccgtgacactgcccaaaattgtgcaagacaggctatcaacaacgccgcctccaggataa 8747873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 68 - 179
Target Start/End: Complemental strand, 11534847 - 11534737
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||  ||||||||||||| ||||||||  ||||| |||||||||||    
T  11534847 tgttgtttttggattttcaaactgttgtatttggattt-cgaaattctattatctactgaagttgttactaggttgagtcaagaccaggtcgctctcttt 11534749  T
Q  168 aatacgtttcgt 179  Q
    || |||||||||    
T  11534748 aagacgtttcgt 11534737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 68 - 179
Target Start/End: Complemental strand, 11560357 - 11560247
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||  ||||||||||||| ||||||||  ||||| |||||||||||    
T  11560357 tgttgtttttggattttcaaactgttgtatttggattt-cgaaattctattatctactgaagttgttactaggttgagtcaagaccaggtcgctctcttt 11560259  T
Q  168 aatacgtttcgt 179  Q
    || |||||||||    
T  11560258 aagacgtttcgt 11560247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 33687772 - 33687607
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||||||||| ||||||||||||||||||||||  ||||| | ||||||||| || |||||| ||| |||||| || ||||| |||||||||||    
T  33687772 tgttgtttttggatttccaaactgttgtatttggattttt-aaattttgttatctaccgaaattgttattaggttgagttaccaccaggtcgctctcttt 33687674  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || |||      ||||||||||||| ||||||||||||||| ||||||||||| || |||| |||||| ||||    
T  33687673 aagacg------tttcgtggcactggccaaaattgtgcaagacagactatcaaccatgccgtctccaggataa 33687607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 74 - 179
Target Start/End: Original strand, 11427975 - 11428079
Alignment:
Q  74 ttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacg 173  Q
    |||||||||| |||||| |||||||||||||||| ||||| |||||| |||| ||||||||| ||||||||||||| ||||| ||||||||||||| |||    
T  11427975 ttttggatttccaaactattgtatttggattttc-aaattttattatttaccgaagttgttattagattgagtcacgaccaggtcgctctctttaagacg 11428073  T
Q  174 tttcgt 179  Q
    ||||||    
T  11428074 tttcgt 11428079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 118 - 240
Target Start/End: Complemental strand, 20748404 - 20748288
Alignment:
Q  118 tatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactat 217  Q
    |||||| ||||||||||||||| ||||||||| ||||| |||| |||||||| | ||||| |      || |||| ||||||||||||||||| ||||||    
T  20748404 tatctatcaaagttgttactaggttgagtcacgaccaggtcgccctctttaacatgtttcat------ggtactgtccaaaattgtgcaaggccgactat 20748311  T
Q  218 caatcacgccgcctccagaataa 240  Q
    ||| |||||||||||||||||||    
T  20748310 caaccacgccgcctccagaataa 20748288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 73 - 231
Target Start/End: Complemental strand, 12406527 - 12406366
Alignment:
Q  73 tttttggattttcaaactgttgtatttggattttccaaattctatt---------atctaccaaagttgttactagattgagtcacaaccagatcgctct 163  Q
    ||||||||||||||||||||||||||||||||||| |  || | ||         || |||| ||||||||||||||||||||||| ||||| |||||||    
T  12406527 tttttggattttcaaactgttgtatttggattttcaatttttttttttaaagaatatataccgaagttgttactagattgagtcacgaccaggtcgctct 12406428  T
Q  164 ctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcct 231  Q
    ||| || |||      |||||||||| || | ||| |||||||||| |||||||||||||||||||||    
T  12406427 cttaaagacg------tttcgtggcagtgcctaaagttgtgcaaggaagactatcaatcacgccgcct 12406366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 17964694 - 17964634
Alignment:
Q  73 tttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgtt 134  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||    
T  17964694 tttttggatttccaaactgttgtatttgga-tttccaaattctattatctaccgaagttgtt 17964634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 230
Target Start/End: Complemental strand, 25316740 - 25316580
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaa---attctattatctaccaaagttgttactagattgagtcacaaccagatcgctct 163  Q
    ||||| |||||| |||| |||||| || ||||||||||| | ||   ||||||||||||||| || |||||||||||||||||| | ||||| ||||||     
T  25316740 ttgttgtttttgaatttccaaactattatatttggatttccaaattcattctattatctaccgaaattgttactagattgagtcgcgaccaggtcgctca 25316641  T
Q  164 ctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcc 230  Q
     ||||| |||      ||| ||||||||| |||||||||||||| ||| ||||| || |||||||||    
T  25316640 atttaagacg------ttttgtggcactgcccaaaattgtgcaaagcaaactatgaaccacgccgcc 25316580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 230
Target Start/End: Complemental strand, 26204234 - 26204074
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaa---attctattatctaccaaagttgttactagattgagtcacaaccagatcgctct 163  Q
    ||||| |||||| |||| |||||| || ||||||||||| | ||   ||||||||||||||| || |||||||||||||||||| | ||||| ||||||     
T  26204234 ttgttgtttttgaatttccaaactattatatttggatttccaaattcattctattatctaccgaaattgttactagattgagtcgcgaccaggtcgctca 26204135  T
Q  164 ctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcc 230  Q
     ||||| |||      ||| ||||||||| |||||||||||||| ||| ||||| || |||||||||    
T  26204134 atttaagacg------ttttgtggcactgcccaaaattgtgcaaagcaaactatgaaccacgccgcc 26204074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 16836220 - 16836160
Alignment:
Q  180 tttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||||||||||||| |||||||||| |||||||||||||||| |||||||||||||| ||||    
T  16836220 tttcgtggcactgcccaaaattgtacaaggcagactatcaaccacgccgcctccaggataa 16836160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 17964623 - 17964563
Alignment:
Q  180 tttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||||||||||||  ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  17964623 tttcgtggcactatccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 17964563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 11614151 - 11614096
Alignment:
Q  185 tggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||||||||  |||||||||||||||||||||||||| |||||||||||||| ||||    
T  11614151 tggcactgctcaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 11614096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 240
Target Start/End: Complemental strand, 24589275 - 24589168
Alignment:
Q  127 aagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgc 226  Q
    ||||||||||||  ||||||||| | ||||||||||||||||| |||      ||||||| ||||  |||||||||||||||  |||||||||| |||||    
T  24589275 aagttgttactaagttgagtcacgatcagatcgctctctttaaaacg------tttcgtgacactttccaaaattgtgcaagatagactatcaaccacgc 24589182  T
Q  227 cgcctccagaataa 240  Q
    || |||||| ||||    
T  24589181 cgtctccaggataa 24589168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 240
Target Start/End: Complemental strand, 13736794 - 13736682
Alignment:
Q  122 taccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaat 221  Q
    |||| ||||||||||||| ||||||| | ||||| || |||||||||  |||||||||      ||||||| | |||||||||||||| |||||| |||     
T  13736794 taccgaagttgttactaggttgagtcgccaccaggtccctctctttacgacgtttcgt------ggcactgcctaaaattgtgcaaggaagactaccaac 13736701  T
Q  222 cacgccgcctccagaataa 240  Q
    ||| | |||||||| ||||    
T  13736700 cacactgcctccaggataa 13736682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 240
Target Start/End: Complemental strand, 29892381 - 29892265
Alignment:
Q  118 tatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactat 217  Q
    |||||| | ||||||||||||| |||||||||   ||| ||||||||||||| | |||| ||      ||||||| ||||||||||||||| || |||||    
T  29892381 tatctatcgaagttgttactaggttgagtcacggtcaggtcgctctctttaagaagtttggt------ggcactgcccaaaattgtgcaagacaaactat 29892288  T
Q  218 caatcacgccgcctccagaataa 240  Q
    ||| ||| || ||||||| ||||    
T  29892287 caaccacacctcctccaggataa 29892265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 2882866 - 2882824
Alignment:
Q  127 aagttgttactagattgagtcacaaccagatcgctctctttaa 169  Q
    ||||||||||||| ||||||||| |||| ||||||||||||||    
T  2882866 aagttgttactaggttgagtcacgaccatatcgctctctttaa 2882824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 14508932 - 14508976
Alignment:
Q  90 tgttgtatttggattttccaaattctattatctaccaaagttgtta 135  Q
    |||||| ||| ||||||| |||||||||||||||||||||||||||    
T  14508932 tgttgtctttagattttc-aaattctattatctaccaaagttgtta 14508976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 149
Target Start/End: Complemental strand, 19995472 - 19995440
Alignment:
Q  117 ttatctaccaaagttgttactagattgagtcac 149  Q
    ||||||||||||||||||||||| |||||||||    
T  19995472 ttatctaccaaagttgttactaggttgagtcac 19995440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 67 - 240
Target Start/End: Original strand, 17025860 - 17026026
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| ||||| |||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||    
T  17025860 ttgttgtttttagattttcaaattgttgtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctctt 17025958  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| |||      ||||||||||||| |||| |||||||||| |||||||||||||||| ||||||||| ||||    
T  17025959 taagacg------tttcgtggcactgcccaacattgtgcaagacagactatcaatcacgtcgcctccaggataa 17026026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 67 - 240
Target Start/End: Original strand, 17556352 - 17556518
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| ||||| |||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||    
T  17556352 ttgttgtttttagattttcaaattgttgtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctctt 17556450  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| |||      ||||||||||||| |||| |||||||||| |||||||||||||||| ||||||||| ||||    
T  17556451 taagacg------tttcgtggcactgcccaacattgtgcaagacagactatcaatcacgtcgcctccaggataa 17556518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 31450036 - 31449870
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| ||||||||||| |||| |||||||||||||||| ||||||||||||||||| | ||||||||||||| ||||||||| ||||| ||||||||||    
T  31450036 ttgttgtttttggatttccaaagtgttgtatttggattt-ccaaattctattatctatcgaagttgttactaggttgagtcacgaccaggtcgctctctt 31449938  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| |||      ||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||    
T  31449937 taagacg------tttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataa 31449870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 44926092 - 44925927
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||| ||||| ||||||| ||||||||||||||| ||||||| ||||||||| ||||||||||||| ||||||||| ||||| |||||||||||    
T  44926092 tgttgttttttgatttccaaactgctgtatttggattttc-aaattcttttatctaccgaagttgttactaggttgagtcacgaccaggtcgctctcttt 44925994  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || |||      ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  44925993 aaaacg------tttcgtggcactgcccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 44925927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 68 - 234
Target Start/End: Original strand, 33416473 - 33416632
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||||||||| |||||||||||||||| |||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||| |||||||    
T  33416473 tgttgtttttggatttccaaactgttgtatttgaattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcggtctcttt 33416571  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctcca 234  Q
    || |||      ||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||    
T  33416572 aagacg------tttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctcca 33416632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 67 - 232
Target Start/End: Original strand, 1807397 - 1807555
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| |||||||||||||||| ||||||||||| ||||||||| |||||||||||||| ||||||||||||| ||||||||| || || ||||||||||    
T  1807397 ttgttgtttttggattttcaaattgttgtatttgaattttccaa-ttctattatctaccgaagttgttactaggttgagtcacgactaggtcgctctctt 1807495  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctc 232  Q
    ||| |||      ||||||| ||||| ||||||||||||||||||||||||||| |||||||||||    
T  1807496 taagacg------tttcgtgacactgcccaaaattgtgcaaggcagactatcaaccacgccgcctc 1807555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 73 - 220
Target Start/End: Complemental strand, 4238479 - 4238339
Alignment:
Q  73 tttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatac 172  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||||| ||    
T  4238479 tttttggatttccaaactgttgtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctctttaacac 4238381  T
Q  173 gtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaa 220  Q
    |      |||| |||||||| |||||||||||||||||||||||||||    
T  4238380 g------tttcatggcactgcccaaaattgtgcaaggcagactatcaa 4238339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 18876536 - 18876371
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| ||||||||||| ||||||| ||||||||||||| |||||||||||||| |||| ||||||||||||| ||||||||| ||||| ||||||| ||    
T  18876536 ttgttgtttttggatttccaaactgctgtatttggattt-ccaaattctattatataccgaagttgttactaggttgagtcacgaccaggtcgctct-tt 18876439  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| |||      ||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||    
T  18876438 taagacg------tttcgtggcactgcccaaaattgtgcaagacagactatcaaccacgccgcctccaggataa 18876371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 73 - 220
Target Start/End: Complemental strand, 4243218 - 4243078
Alignment:
Q  73 tttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatac 172  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||| | ||||||||||||| ||||||||| ||||| ||||||||||||| ||    
T  4243218 tttttggatttccaaactgttgtatttggattt-ccaaattctattatctatcgaagttgttactaggttgagtcacgaccaggtcgctctctttaacac 4243120  T
Q  173 gtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaa 220  Q
    |      |||| |||||||| |||||||||||||||||||||||||||    
T  4243119 g------tttcatggcactgcccaaaattgtgcaaggcagactatcaa 4243078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 38182406 - 38182241
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| |||||| ||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||| || ||||||||| ||||| ||||||||||    
T  38182406 ttgttgtttttgaattgtcaaactgttgtatttggattt-ccaaattctattatctaccgaagttgttac-aggttgagtcacgaccaggtcgctctctt 38182309  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| |||      ||||||||||||  |||| ||||||||||||||| |||||| |||||||||||||| ||||    
T  38182308 taaaacg------tttcgtggcacttcccaagattgtgcaaggcagattatcaaccacgccgcctccaggataa 38182241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 67 - 208
Target Start/End: Complemental strand, 40130856 - 40130722
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||    
T  40130856 ttgttgtttttggatttccaaactgttgtatttggattt-ccaaattctattatctaccgaagttgttactaggttgagtcacgaccaggtcgctctctt 40130758  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaag 208  Q
    ||| |||      ||||||||||||| |||||||||||||||    
T  40130757 taagacg------tttcgtggcactgcccaaaattgtgcaag 40130722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 67 - 231
Target Start/End: Original strand, 34118391 - 34118548
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| ||||||||||| ||||||  ||||||| ||||| ||||||||||||||||||  ||||||||||||| ||||||||| ||||| ||||||||||    
T  34118391 ttgttgtttttggatttccaaactaatgtatttagattt-ccaaattctattatctactgaagttgttactaggttgagtcacgaccaggtcgctctctt 34118489  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcct 231  Q
    ||| |||      |||| |||||||| ||||||||||||||||||||||||||| |||| |||||    
T  34118490 taagacg------tttcatggcactgcccaaaattgtgcaaggcagactatcaaccacgtcgcct 34118548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 67 - 240
Target Start/End: Complemental strand, 1911139 - 1910973
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| | ||||||||| ||| || |||||| | ||| ||||||||||    
T  1911139 ttgttgtttttggatttccaaactgttgtatttggattttc-aaattctattatctatcgaagttgttattaggttaagtcacgatcaggtcgctctctt 1911041  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| |||      ||||||||||||   ||||||||||||| |||||||||||| ||||| |||||||| ||||    
T  1911040 taagacg------tttcgtggcactagtcaaaattgtgcaaagcagactatcaaccacgctgcctccagtataa 1910973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 73 - 228
Target Start/End: Complemental strand, 28559818 - 28559670
Alignment:
Q  73 tttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatac 172  Q
    ||||||||||| |||||||||||||||||||||   ||||| ||||||||||| ||||||||||||| ||||||||| || |  ||||||||| ||| ||    
T  28559818 tttttggatttccaaactgttgtatttggatttat-aaattatattatctaccgaagttgttactaggttgagtcacgacaatgtcgctctctataagac 28559720  T
Q  173 gtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccg 228  Q
    |      ||||||||||||| |||||||||||||||||| |||||||| |||||||    
T  28559719 g------tttcgtggcactgtccaaaattgtgcaaggcaaactatcaaccacgccg 28559670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 127 - 234
Target Start/End: Complemental strand, 40125996 - 40125895
Alignment:
Q  127 aagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgc 226  Q
    ||||||||||||| ||||||||| ||||||||||||||||||| |||||||||      ||||||| ||||||||||||||||||||||||||| |||||    
T  40125996 aagttgttactaggttgagtcacgaccagatcgctctctttaagacgtttcgt------ggcactgcccaaaattgtgcaaggcagactatcaaccacgc 40125903  T
Q  227 cgcctcca 234  Q
    ||||||||    
T  40125902 cgcctcca 40125895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 117 - 240
Target Start/End: Original strand, 19166608 - 19166725
Alignment:
Q  117 ttatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagacta 216  Q
    ||||||||| ||||||||||||| ||||||||| ||||  ||||||||||||| |||||||      ||||||||| ||||||||||||| |||||||||    
T  19166608 ttatctaccgaagttgttactaggttgagtcacgaccatgtcgctctctttaagacgtttc------gtggcactgcccaaaattgtgcacggcagacta 19166701  T
Q  217 tcaatcacgccgcctccagaataa 240  Q
    |||| |||||||||||||| ||||    
T  19166702 tcaaccacgccgcctccaggataa 19166725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 118 - 234
Target Start/End: Original strand, 24090602 - 24090712
Alignment:
Q  118 tatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactat 217  Q
    |||||||| ||||||||||||| ||||||||| ||||| ||||||||||||| |||      ||||||||||||| ||||| |||||||||||||| |||    
T  24090602 tatctaccgaagttgttactaggttgagtcacgaccaggtcgctctctttaagacg------tttcgtggcactgcccaaagttgtgcaaggcagaatat 24090695  T
Q  218 caatcacgccgcctcca 234  Q
    |||||||| ||||||||    
T  24090696 caatcacgtcgcctcca 24090712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 111 - 232
Target Start/End: Complemental strand, 2355586 - 2355471
Alignment:
Q  111 attctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggc 210  Q
    ||||||||||||||||||||||||||||||||||||||| |||| ||| |||| ||||| |||      ||||||| ||||   |||||||||||||| |    
T  2355586 attctattatctaccaaagttgttactagattgagtcaccaccatatcactctttttaagacg------tttcgtgacacttttcaaaattgtgcaagac 2355493  T
Q  211 agactatcaatcacgccgcctc 232  Q
    |||||||||| |||||||||||    
T  2355492 agactatcaaccacgccgcctc 2355471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 127 - 240
Target Start/End: Complemental strand, 15875779 - 15875672
Alignment:
Q  127 aagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgc 226  Q
    |||||||||||| ||||||| || ||||| ||||||||||||  |||||||||      ||||||| ||||||||||||||||||||||||||| |||||    
T  15875779 aagttgttactaaattgagttacgaccaggtcgctctctttaggacgtttcgt------ggcactgcccaaaattgtgcaaggcagactatcaaccacgc 15875686  T
Q  227 cgcctccagaataa 240  Q
    ||||||||| ||||    
T  15875685 cgcctccaggataa 15875672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 68 - 149
Target Start/End: Original strand, 19915073 - 19915153
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcac 149  Q
    |||| ||||||||||| |||||||||||||||| |||| ||||||||||||||||||| ||||||||||||| |||||||||    
T  19915073 tgttgtttttggatttacaaactgttgtatttgtattt-ccaaattctattatctaccgaagttgttactaggttgagtcac 19915153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 115 - 240
Target Start/End: Original strand, 36683551 - 36683670
Alignment:
Q  115 tattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagac 214  Q
    |||||||||||  |||||||||||| ||||||||  || || ||||||||||||| |||||||      ||||||||| ||||||||||| |||||||||    
T  36683551 tattatctaccggagttgttactaggttgagtcatgactaggtcgctctctttaagacgtttc------gtggcactgcccaaaattgtgtaaggcagac 36683644  T
Q  215 tatcaatcacgccgcctccagaataa 240  Q
    |||||| ||||| |||||||| ||||    
T  36683645 tatcaaccacgctgcctccaggataa 36683670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 234
Target Start/End: Complemental strand, 17953992 - 17953883
Alignment:
Q  119 atctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatc 218  Q
    ||||||| ||||||||||||| |||||| || ||||  ||||| ||||||| |||||||||      ||||||| ||||||||||||||| |||| ||||    
T  17953992 atctaccgaagttgttactaggttgagtaacgaccatgtcgctttctttaagacgtttcgt------ggcactgcccaaaattgtgcaagacagaatatc 17953899  T
Q  219 aatcacgccgcctcca 234  Q
    || |||||||||||||    
T  17953898 aaccacgccgcctcca 17953883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 232
Target Start/End: Complemental strand, 23548752 - 23548644
Alignment:
Q  118 tatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactat 217  Q
    |||||||| ||||||||||||| ||||||||| ||| | ||||||||| ||| |||      |||||||||||||   ||||||||||||||| ||||||    
T  23548752 tatctaccgaagttgttactaggttgagtcacgacctggtcgctctctataagacg------tttcgtggcactgtgtaaaattgtgcaaggcggactat 23548659  T
Q  218 caatcacgccgcctc 232  Q
    ||| |||| ||||||    
T  23548658 caaccacgtcgcctc 23548644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 43302880 - 43302722
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||||||||||||||||||||||| |||| ||||||| ||||||         ||||||||| |||  ||||| || ||| | ||| |||||||    
T  43302880 tgttgtttttggattttcaaactgttgtatatgga-tttccaagttctat--------gaagttgttattaggctgagttacgacccggtcgttctcttt 43302790  T
Q  168 aatacgtttcgttttcgtggcactgacc-aaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || |||      ||||||||||||| || |||||||||||||| |||||||||| |||||||||||||| ||||    
T  43302789 aagacg------tttcgtggcactgtccaaaaattgtgcaaggtagactatcaaccacgccgcctccaggataa 43302722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 12820370 - 12820430
Alignment:
Q  180 tttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||||||||||||| | |||||||||||| ||| |||||||||||| |||||||||| ||||    
T  12820370 tttcgtggcactgcctaaaattgtgcaaagcaaactatcaatcacaccgcctccaggataa 12820430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 232
Target Start/End: Original strand, 2965606 - 2965713
Alignment:
Q  118 tatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactat 217  Q
    |||| |||||| |||||||||| | ||||||| ||||| ||||||||||||| |||      ||||||||||||| | ||||||||||||| || |||||    
T  2965606 tatccaccaaatttgttactaggt-gagtcacgaccaggtcgctctctttaaaacg------tttcgtggcactgcctaaaattgtgcaagacacactat 2965698  T
Q  218 caatcacgccgcctc 232  Q
    ||| ||| |||||||    
T  2965699 caaccacaccgcctc 2965713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 28565330 - 28565268
Alignment:
Q  76 ttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactag 139  Q
    |||||||||||||||||| ||||| || |||| ||||| ||||||||| | |||||||||||||    
T  28565330 ttggattttcaaactgttttattt-gaatttctaaattatattatctatcgaagttgttactag 28565268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 28572953 - 28572891
Alignment:
Q  76 ttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactag 139  Q
    |||||||||||||||||| ||||| || |||| ||||| ||||||||| | |||||||||||||    
T  28572953 ttggattttcaaactgttttattt-gaatttctaaattatattatctatcgaagttgttactag 28572891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 24673436 - 24673384
Alignment:
Q  127 aagttgttactagattgagtcacaaccagatcgctctctttaatacgtttcgt 179  Q
    ||||||||||||| |||||| || | ||||||||||| ||||| |||||||||    
T  24673436 aagttgttactaggttgagttacgatcagatcgctctttttaaaacgtttcgt 24673384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 232
Target Start/End: Original strand, 29220303 - 29220347
Alignment:
Q  188 cactgaccaaaattgtgcaaggcagactatcaatcacgccgcctc 232  Q
    |||||| ||||||||||||||| |||||||||| ||||| |||||    
T  29220303 cactgatcaaaattgtgcaaggtagactatcaaccacgctgcctc 29220347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 67 - 240
Target Start/End: Original strand, 35559 - 35725
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||  ||||||||||||| || ||| || ||||   |||||||||    
T  35559 ttgttatttttgcattttcaaactgttgtatttgga-tttccaaattctattatttactgaagttgttactaggttaagttacgaccatgccgctctctt 35657  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| |||      ||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||| ||||    
T  35658 taagacg------tttcgtgacactggccaaaattgtgcaaggcagactatcaaccacgccgcctccaggataa 35725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 166256 - 166090
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctcttt 167  Q
    |||| ||||||||||| ||||||||||||||| | ||||||||||||| || |||||| || ||| |||||| ||||||||||||||| |||||||||||    
T  166256 tgttgtttttggatttccaaactgttgtattttggttttccaaattctgttttctaccgaaattgatactaggttgagtcacaaccaggtcgctctcttt 166157  T
Q  168 aatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    || |||      ||||||||||||| | ||||||||||||| || |||||||| |||||||||||||| ||||    
T  166156 aagacg------tttcgtggcactgccaaaaattgtgcaagacatactatcaaccacgccgcctccaggataa 166090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 67 - 240
Target Start/End: Original strand, 82990 - 83157
Alignment:
Q  67 ttgttatttttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctt 166  Q
    ||||| |||||||||||  |||||||||||||| | ||||||||||||| || |||||| ||||||||||||| ||||||||| ||||| ||||||||||    
T  82990 ttgttgtttttggatttctaaactgttgtattttggttttccaaattctgttttctaccgaagttgttactaggttgagtcacgaccaggtcgctctctt 83089  T
Q  167 taatacgtttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||| |||      ||||||| |||   |||||||| |||||||||||||||||| || ||||||||||| ||||    
T  83090 taagacg------tttcgtgacaccacccaaaattatgcaaggcagactatcaaccatgccgcctccaggataa 83157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 75 - 240
Target Start/End: Original strand, 25332 - 25490
Alignment:
Q  75 tttggattttcaaactgttgtatttggattttccaaattctattatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaatacgt 174  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||| | ||||||||||||| |||||||||||  || || |||||||||| |||     
T  25332 tttggattttcaaactgctgtatttggattt-ccaaattctattatctatcgaagttgttactaggttgagtcacaattaggtcactctctttaagacg- 25429  T
Q  175 ttcgttttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
         || |||| |||||   ||||||||||||| ||||||||||| |||||||| ||||| ||||    
T  25430 -----ttacgtgacactgcgtaaaattgtgcaagacagactatcaaccacgccgcgtccaggataa 25490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 3966 - 4017
Alignment:
Q  118 tatctaccaaagttgttactagattgagtcacaaccagatcgctctctttaa 169  Q
    |||||||| ||||||||||||| ||||||||| |||| ||||||||||||||    
T  3966 tatctaccgaagttgttactaggttgagtcacgaccatatcgctctctttaa 4017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 15197 - 15247
Alignment:
Q  68 tgttatttttggattttcaaactgttgtatttggattttccaaattctatt 118  Q
    |||| ||||||||||| ||||||||||||||| | ||||||||||||||||    
T  15197 tgttgtttttggatttacaaactgttgtattttggttttccaaattctatt 15247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 255848 - 255908
Alignment:
Q  180 tttcgtggcactgaccaaaattgtgcaaggcagactatcaatcacgccgcctccagaataa 240  Q
    ||||||||||||  ||||||||||||||| || ||||||||  | ||||||||||| ||||    
T  255848 tttcgtggcactacccaaaattgtgcaagacatactatcaactatgccgcctccaggataa 255908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University