View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21128_low_1 (Length: 679)

Name: NF21128_low_1
Description: NF21128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21128_low_1
NF21128_low_1
[»] chr3 (27 HSPs)
chr3 (1-335)||(22437710-22438045)
chr3 (47-209)||(22445661-22445821)
chr3 (333-437)||(22359368-22359472)
chr3 (333-437)||(22369270-22369374)
chr3 (333-437)||(22438082-22438186)
chr3 (333-441)||(22446408-22446516)
chr3 (601-679)||(22448953-22449031)
chr3 (204-335)||(22446251-22446371)
chr3 (208-332)||(22449273-22449392)
chr3 (210-335)||(22449048-22449169)
chr3 (601-679)||(22438028-22438106)
chr3 (601-679)||(22446354-22446432)
chr3 (601-679)||(22449209-22449287)
chr3 (459-577)||(22438551-22438664)
chr3 (602-679)||(22440065-22440142)
chr3 (212-335)||(22439964-22440082)
chr3 (2-48)||(22445576-22445622)
chr3 (459-505)||(22446764-22446810)
chr3 (601-679)||(22359310-22359392)
chr3 (1-51)||(22359093-22359143)
chr3 (1-51)||(22368995-22369045)
chr3 (601-679)||(22369212-22369294)
chr3 (520-568)||(7272562-7272610)
chr3 (298-335)||(22359290-22359327)
chr3 (298-335)||(22369192-22369229)
chr3 (520-565)||(22446817-22446862)
chr3 (520-565)||(23626248-23626293)
[»] chr2 (9 HSPs)
chr2 (520-566)||(38358268-38358314)
chr2 (520-565)||(25641086-25641132)
chr2 (520-557)||(7318404-7318441)
chr2 (520-557)||(9468539-9468576)
chr2 (520-557)||(11093978-11094015)
chr2 (520-565)||(19272663-19272708)
chr2 (520-569)||(31122282-31122331)
chr2 (520-565)||(38127764-38127809)
chr2 (520-568)||(36525600-36525648)
[»] chr6 (5 HSPs)
chr6 (520-565)||(9222655-9222700)
chr6 (520-565)||(18591122-18591167)
chr6 (520-566)||(20504420-20504466)
chr6 (520-565)||(8237987-8238032)
chr6 (520-560)||(14291406-14291446)
[»] chr4 (8 HSPs)
chr4 (520-561)||(17494565-17494606)
chr4 (520-565)||(28951117-28951162)
chr4 (520-566)||(5514358-5514404)
chr4 (520-565)||(29104160-29104205)
chr4 (520-565)||(31226510-31226555)
chr4 (520-565)||(51353444-51353489)
chr4 (520-564)||(17696394-17696437)
chr4 (521-565)||(49300739-49300783)
[»] chr1 (5 HSPs)
chr1 (520-565)||(21853561-21853606)
chr1 (520-558)||(11336291-11336329)
chr1 (520-558)||(11494310-11494348)
chr1 (520-565)||(1824516-1824561)
chr1 (520-568)||(972842-972890)
[»] chr7 (4 HSPs)
chr7 (520-565)||(5864774-5864820)
chr7 (520-566)||(24478025-24478071)
chr7 (520-557)||(24233629-24233666)
chr7 (520-557)||(38608003-38608040)
[»] scaffold0430 (1 HSPs)
scaffold0430 (520-565)||(12812-12857)
[»] scaffold0179 (1 HSPs)
scaffold0179 (520-557)||(2741-2778)
[»] scaffold0022 (1 HSPs)
scaffold0022 (520-565)||(63360-63405)
[»] chr8 (2 HSPs)
chr8 (520-565)||(25653705-25653750)
chr8 (520-565)||(34227328-34227373)
[»] chr5 (3 HSPs)
chr5 (520-565)||(4413928-4413973)
chr5 (520-565)||(12148237-12148282)
chr5 (528-568)||(32717022-32717062)


Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 22437710 - 22438045
Alignment:
Q  1 tgaggaaaaagctattagtccttcaagattatataacataaagatcattga------gttcatgtgaattattgagctcttagtgtttattaattaaccg 94  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||    
T  22437710 tgaggaaaaagctcatagtccttcaagattatataacataaagatcattgacttcgagttcatgtgaattattgagctcttagtgtttattaattaaccg 22437809  T
Q  95 gtagttaaacaatgcatctcaatcttagttttatttannnnnnncctcagatcacaatctcagtagttaaataattctaaagattgtcaactctcctctt 194  Q
    |||||||||||||||||||||||||||||||||||||       || ||||||||||||||||||||||||||||||||||||||||||||||| |        
T  22437810 gtagttaaacaatgcatctcaatcttagttttatttatttttttccacagatcacaatctcagtagttaaataattctaaagattgtcaactcttc---- 22437905  T
Q  195 gagtggggataaataatttagttttgaatgggcaataggctatgcaatgtgaggtgtagtttaaccattttaaagccttagtcaaaagaaagactttgtt 294  Q
     ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22437906 -agtggggataaataatttagttttgaatgggcaattggctatgcaatgtgaggtgtagtttaaccattttaaagccttagtcaaaagaaagactttgtt 22438004  T
Q  295 aacttaactctggttaaagattgtttcatccatggtttaag 335  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  22438005 aacttaactctggttaaagattgtttcaaccatggtttaag 22438045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 47 - 209
Target Start/End: Original strand, 22445661 - 22445821
Alignment:
Q  47 attgagttcatgtgaattattgagctcttagtgtttattaattaaccggtagttaaacaatgcatctcaatcttagttttatttannnnnnncctcagat 146  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||       || |||||    
T  22445661 attgagttcatgtgaattattgagctcttagtgtttattaattaacctgtagttaaacaatgcatctcaatcttagttatatttatttttttccacagat 22445760  T
Q  147 cacaatctcagtagttaaataattctaaagattgtcaactctcctcttgagtggggataaata 209  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||  |||||||||||||    
T  22445761 cacaatctcagtagttaaataattctaaagattgtcaactct--tcttcggtggggataaata 22445821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 333 - 437
Target Start/End: Original strand, 22359368 - 22359472
Alignment:
Q  333 aagagaagactaactttgttaattagatttaatactctcaatcaactaaacctagatccgtggctgattagcggtaccattttgaaaaaataaggattaa 432  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  22359368 aagagaagactaactttgttaattagagttaatactctcaatcaactaaacctagatccgtggctgattagctgtaccattttgaaaaaataagggttaa 22359467  T
Q  433 aaata 437  Q
    |||||    
T  22359468 aaata 22359472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 333 - 437
Target Start/End: Original strand, 22369270 - 22369374
Alignment:
Q  333 aagagaagactaactttgttaattagatttaatactctcaatcaactaaacctagatccgtggctgattagcggtaccattttgaaaaaataaggattaa 432  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  22369270 aagaaaagactaactttgttaattagagttaatactctcaatcaactaaacctagatccgtggctgattagctgtaccattttgaaaaaataagggttaa 22369369  T
Q  433 aaata 437  Q
    |||||    
T  22369370 aaata 22369374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 333 - 437
Target Start/End: Original strand, 22438082 - 22438186
Alignment:
Q  333 aagagaagactaactttgttaattagatttaatactctcaatcaactaaacctagatccgtggctgattagcggtaccattttgaaaaaataaggattaa 432  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  22438082 aagagaagactaactttgttaattagagttaatactctaaatcaactaaacctagatccgtggctgattagctgtaccattttgaaaaaataagggttaa 22438181  T
Q  433 aaata 437  Q
     ||||    
T  22438182 gaata 22438186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 333 - 441
Target Start/End: Original strand, 22446408 - 22446516
Alignment:
Q  333 aagagaagactaactttgttaattagatttaatactctcaatcaactaaacctagatccgtggctgattagcggtaccattttgaaaaaataaggattaa 432  Q
    |||| |||||||||||||||||||||| ||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  22446408 aagaaaagactaactttgttaattagaattaatactctcaatctactatacctagatccatggctgattagcggtaccattttgaaaaaataagggttaa 22446507  T
Q  433 aaataattt 441  Q
    |||||||||    
T  22446508 aaataattt 22446516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 601 - 679
Target Start/End: Original strand, 22448953 - 22449031
Alignment:
Q  601 taattaagaaagctagtcttctctttaactagtgattgttgaatcaattgggagtattgaacttaaaccatggttgaaa 679  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22448953 taattaagaaagctagtcttctctttaactagtgattgttgaatcaattgggagtattgaacttaaaccatggttgaaa 22449031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 204 - 335
Target Start/End: Original strand, 22446251 - 22446371
Alignment:
Q  204 taaataatttagttttgaatgggcaataggctatgcaatgtgaggtgtagtttaaccattttaaagccttagtcaaaagaaagactttgttaacttaact 303  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||           
T  22446251 taaataatttagttttgaatgggc----ggctatgcaatgtgaggtgtagtttaaccattttaaagacttggtcaaaagaaaaactttgttaa------- 22446339  T
Q  304 ctggttaaagattgtttcatccatggtttaag 335  Q
    ||||||||||||||||||| ||||||||||||    
T  22446340 ctggttaaagattgtttcaaccatggtttaag 22446371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 208 - 332
Target Start/End: Complemental strand, 22449392 - 22449273
Alignment:
Q  208 taatttagttttgaatgggcaataggctatgcaatgtgaggtgtagtttaaccattttaaagccttagtcaaaagaaagactttgttaacttaactctgg 307  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||| ||||| ||||||||||  ||||||||||||||||||||||||||| |     ||    
T  22449392 taatttagttttgaatgggcaattggctatgcaatgtaaggtgtaatttaatcattttaaagtgttagtcaaaagaaagactttgttaactca-----gg 22449298  T
Q  308 ttaaagattgtttcatccatggttt 332  Q
    ||||||||| ||||| |||||||||    
T  22449297 ttaaagattatttcaaccatggttt 22449273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 210 - 335
Target Start/End: Complemental strand, 22449169 - 22449048
Alignment:
Q  210 atttagttttgaatgggcaa-taggctatgcaatgtgaggtgtagtttaaccattttaaagccttagtcaaaagaaagactttgttaacttaactctggt 308  Q
    |||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||||||||| |     |||    
T  22449169 atttagttttgaatgggcaaattggctatgcaatgtgaggtgtactttaaccattttaaagtcttggtcaaaagaaagactttgttaactca-----ggt 22449075  T
Q  309 taaagattgtttcatccatggtttaag 335  Q
    |||||||| ||||| ||||||| ||||    
T  22449074 taaagattatttcaaccatggtgtaag 22449048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 601 - 679
Target Start/End: Complemental strand, 22438106 - 22438028
Alignment:
Q  601 taattaagaaagctagtcttctctttaactagtgattgttgaatcaattgggagtattgaacttaaaccatggttgaaa 679  Q
    ||||||| |||| ||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||    
T  22438106 taattaacaaagttagtcttctctttaactagtgacagttgaatcaattgggagtattaaacttaaaccatggttgaaa 22438028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 601 - 679
Target Start/End: Complemental strand, 22446432 - 22446354
Alignment:
Q  601 taattaagaaagctagtcttctctttaactagtgattgttgaatcaattgggagtattgaacttaaaccatggttgaaa 679  Q
    ||||||| |||| ||||||| ||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||    
T  22446432 taattaacaaagttagtcttttctttaactagtgacagttgaatcaatttggagtattgaacttaaaccatggttgaaa 22446354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 601 - 679
Target Start/End: Original strand, 22449209 - 22449287
Alignment:
Q  601 taattaagaaagctagtcttctctttaactagtgattgttgaatcaattgggagtattgaacttaaaccatggttgaaa 679  Q
    ||||||| |||| ||||||||||||||||||||||  |||||||||||||||||||| ||||| |||||||||||||||    
T  22449209 taattaaaaaagttagtcttctctttaactagtgacagttgaatcaattgggagtatagaactgaaaccatggttgaaa 22449287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 459 - 577
Target Start/End: Original strand, 22438551 - 22438664
Alignment:
Q  459 acggaatatagagaggaatgaaagtaaagaccgaattaattccgtctcttgaatnnnnnnnggttaatagtgttttaatccctataatataggtcatttc 558  Q
    ||||||||||||||||||||||||||||||||||||||||||||||     |||       ||||||||||| ||||| | ||||||||||| |||||||    
T  22438551 acggaatatagagaggaatgaaagtaaagaccgaattaattccgtc-----aataaaaaaaggttaatagtgctttaacctctataatatagatcatttc 22438645  T
Q  559 tggttttttctatcaaatg 577  Q
    ||||||| ||||| |||||    
T  22438646 tggttttctctatgaaatg 22438664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 602 - 679
Target Start/End: Complemental strand, 22440142 - 22440065
Alignment:
Q  602 aattaagaaagctagtcttctctttaactagtgattgttgaatcaattgggagtattgaacttaaaccatggttgaaa 679  Q
    |||||| ||||||| |||||||||||||||||||||||||||||| |||||| |||| ||||||||||||||| ||||    
T  22440142 aattaacaaagctaatcttctctttaactagtgattgttgaatcagttgggattattaaacttaaaccatggtggaaa 22440065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 212 - 335
Target Start/End: Original strand, 22439964 - 22440082
Alignment:
Q  212 ttagttttgaatgggcaataggctatgcaatgtgaggtgtagtttaaccattttaaagccttagtcaaaagaaagactttgttaacttaactctggttaa 311  Q
    |||||||||||| | |||| ||||||||||||||||||    |||||||||||||||| ||| | |||||||||||||||||||||| |     ||||||    
T  22439964 ttagttttgaatcgccaattggctatgcaatgtgaggtaatctttaaccattttaaagtcttggacaaaagaaagactttgttaactca-----ggttaa 22440058  T
Q  312 agattgtttcatccatggtttaag 335  Q
    ||||||||||  ||||||||||||    
T  22440059 agattgtttccaccatggtttaag 22440082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 2 - 48
Target Start/End: Original strand, 22445576 - 22445622
Alignment:
Q  2 gaggaaaaagctattagtccttcaagattatataacataaagatcat 48  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||    
T  22445576 gaggacaaagctattagtccttcaagattatataacataaagatcat 22445622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 459 - 505
Target Start/End: Original strand, 22446764 - 22446810
Alignment:
Q  459 acggaatatagagaggaatgaaagtaaagaccgaattaattccgtct 505  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||    
T  22446764 acggaatatagagaggaatgaaagtaaaggccgaattaattccgtct 22446810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 601 - 679
Target Start/End: Complemental strand, 22359392 - 22359310
Alignment:
Q  601 taattaagaaagctagtcttctctttaactagtgattgttgaatcaattgggagta----ttgaacttaaaccatggttgaaa 679  Q
    ||||||| |||| ||||||||||||||||||||||  ||||||||||||||||| |    || ||||||||||||||||||||    
T  22359392 taattaacaaagttagtcttctctttaactagtgacagttgaatcaattgggagaaagaattaaacttaaaccatggttgaaa 22359310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 22359093 - 22359143
Alignment:
Q  1 tgaggaaaaagctattagtccttcaagattatataacataaagatcattga 51  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||||||    
T  22359093 tgaggaaaaagctcatagtccttcaagattatatagcataaagatcattga 22359143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 22368995 - 22369045
Alignment:
Q  1 tgaggaaaaagctattagtccttcaagattatataacataaagatcattga 51  Q
    |||||||||||||  |||||||||||||||||||| |||||||||||||||    
T  22368995 tgaggaaaaagctcatagtccttcaagattatatagcataaagatcattga 22369045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 601 - 679
Target Start/End: Complemental strand, 22369294 - 22369212
Alignment:
Q  601 taattaagaaagctagtcttctctttaactagtgattgttgaatcaattgggagta----ttgaacttaaaccatggttgaaa 679  Q
    ||||||| |||| ||||||| ||||||||||||||  ||||||||||||||||| |    || ||||||||||||||||||||    
T  22369294 taattaacaaagttagtcttttctttaactagtgacagttgaatcaattgggagaaagaattaaacttaaaccatggttgaaa 22369212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 520 - 568
Target Start/End: Original strand, 7272562 - 7272610
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcatttctggttttttc 568  Q
    |||||||||| |||||  |||| ||||||||||||||||||||||||||    
T  7272562 ggttaatagtattttaccccctctaatataggtcatttctggttttttc 7272610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 335
Target Start/End: Original strand, 22359290 - 22359327
Alignment:
Q  298 ttaactctggttaaagattgtttcatccatggtttaag 335  Q
    ||||||| ||||||||||||||||| ||||||||||||    
T  22359290 ttaactcaggttaaagattgtttcaaccatggtttaag 22359327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 298 - 335
Target Start/End: Original strand, 22369192 - 22369229
Alignment:
Q  298 ttaactctggttaaagattgtttcatccatggtttaag 335  Q
    ||||||| ||||||||||||||||| ||||||||||||    
T  22369192 ttaactcaggttaaagattgtttcaaccatggtttaag 22369229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 565
Target Start/End: Original strand, 22446817 - 22446862
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcatttctggtttt 565  Q
    ||||||||||  ||||| |||||||||||||||||||||| |||||    
T  22446817 ggttaatagtactttaacccctataatataggtcatttctagtttt 22446862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 565
Target Start/End: Complemental strand, 23626293 - 23626248
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcatttctggtttt 565  Q
    ||||||||||||||||  |||| |||||||||||||||| ||||||    
T  23626293 ggttaatagtgttttaccccctgtaatataggtcatttccggtttt 23626248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 520 - 566
Target Start/End: Original strand, 38358268 - 38358314
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcatttctggttttt 566  Q
    |||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  38358268 ggttaatagtgttttactccctgtaataaaggtcatttctggttttt 38358314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 565
Target Start/End: Complemental strand, 25641132 - 25641086
Alignment:
Q  520 ggttaatagtgttttaatccc-tataatataggtcatttctggtttt 565  Q
    ||||||||||||||| ||||| ||||||||| |||||||||||||||    
T  25641132 ggttaatagtgtttttatcccctataatataagtcatttctggtttt 25641086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 557
Target Start/End: Complemental strand, 7318441 - 7318404
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcattt 557  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  7318441 ggttaatagtgttttatcccctataatataggtcattt 7318404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 557
Target Start/End: Complemental strand, 9468576 - 9468539
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcattt 557  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  9468576 ggttaatagtgttttacaccctataatataggtcattt 9468539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 557
Target Start/End: Original strand, 11093978 - 11094015
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcattt 557  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  11093978 ggttaatagtgttttaccccctataatataggtcattt 11094015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 565
Target Start/End: Original strand, 19272663 - 19272708
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcatttctggtttt 565  Q
    ||||||||||||||||  |||| |||||||||||||||| ||||||    
T  19272663 ggttaatagtgttttatcccctgtaatataggtcatttccggtttt 19272708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 569
Target Start/End: Complemental strand, 31122331 - 31122282
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcatttctggttttttct 569  Q
    ||||||||||||||||  || |||||||||||||||||  ||||||||||    
T  31122331 ggttaatagtgttttaccccttataatataggtcattttcggttttttct 31122282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 565
Target Start/End: Original strand, 38127764 - 38127809
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcatttctggtttt 565  Q
    ||||||||||||||||  |||| |||||||||||||||| ||||||    
T  38127764 ggttaatagtgttttaccccctgtaatataggtcatttccggtttt 38127809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 520 - 568
Target Start/End: Complemental strand, 36525648 - 36525600
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcatttctggttttttc 568  Q
    ||||||||||||||||  |||| |||||||||||||||  |||||||||    
T  36525648 ggttaatagtgttttaccccctgtaatataggtcattttcggttttttc 36525600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 520 - 565
Target Start/End: Complemental strand, 9222700 - 9222655
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcatttctggtttt 565  Q
    ||||||||||||||||  |||||||||||||| |||||||||||||    
T  9222700 ggttaatagtgttttaccccctataatataggacatttctggtttt 9222655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 520 - 565
Target Start/End: Original strand, 18591122 - 18591167
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcatttctggtttt 565  Q
    ||||||||||||||||  ||||||||||||||||||||| ||||||    
T  18591122 ggttaatagtgttttatcccctataatataggtcatttccggtttt 18591167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 566
Target Start/End: Complemental strand, 20504466 - 20504420
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcatttctggttttt 566  Q
    ||||||||||||||||  || | ||||||||||||||||||||||||    
T  20504466 ggttaatagtgttttaccccatgtaatataggtcatttctggttttt 20504420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 565
Target Start/End: Complemental strand, 8238032 - 8237987
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcatttctggtttt 565  Q
    ||||||||||||||||  |||| |||||||||||||||| ||||||    
T  8238032 ggttaatagtgttttaccccctgtaatataggtcatttccggtttt 8237987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 520 - 560
Target Start/End: Complemental strand, 14291446 - 14291406
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcatttctg 560  Q
    |||||||||||||||| ||||| ||||||||| ||||||||    
T  14291446 ggttaatagtgttttactccctgtaatataggccatttctg 14291406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 520 - 561
Target Start/End: Complemental strand, 17494606 - 17494565
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcatttctgg 561  Q
    ||||||||||||||||| |||| |||||||||||||||||||    
T  17494606 ggttaatagtgttttaacccctgtaatataggtcatttctgg 17494565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 520 - 565
Target Start/End: Complemental strand, 28951162 - 28951117
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcatttctggtttt 565  Q
    |||||| |||||||||  ||||||||||||||||||||||||||||    
T  28951162 ggttaaaagtgttttaccccctataatataggtcatttctggtttt 28951117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 566
Target Start/End: Original strand, 5514358 - 5514404
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcatttctggttttt 566  Q
    |||||||||| ||||| |||||||||||||||||||||  |||||||    
T  5514358 ggttaatagtattttactccctataatataggtcattttcggttttt 5514404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 565
Target Start/End: Original strand, 29104160 - 29104205
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcatttctggtttt 565  Q
    ||||||||||||||||  |||| |||||||||||||||| ||||||    
T  29104160 ggttaatagtgttttaccccctgtaatataggtcatttccggtttt 29104205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 565
Target Start/End: Complemental strand, 31226555 - 31226510
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcatttctggtttt 565  Q
    ||||||||||||||||  |||| |||||||||||||||| ||||||    
T  31226555 ggttaatagtgttttaccccctgtaatataggtcatttccggtttt 31226510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 565
Target Start/End: Complemental strand, 51353489 - 51353444
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcatttctggtttt 565  Q
    ||||||||||| ||||  |||| |||||||||||||||||||||||    
T  51353489 ggttaatagtgatttaccccctgtaatataggtcatttctggtttt 51353444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 520 - 564
Target Start/End: Complemental strand, 17696437 - 17696394
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcatttctggttt 564  Q
    ||||||||||||||||  |||| ||||||||||||||||||||||    
T  17696437 ggttaatagtgttttac-ccctgtaatataggtcatttctggttt 17696394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 521 - 565
Target Start/End: Original strand, 49300739 - 49300783
Alignment:
Q  521 gttaatagtgttttaatccctataatataggtcatttctggtttt 565  Q
    |||||||||||||||  |||| |||||||||||||||| ||||||    
T  49300739 gttaatagtgttttaccccctgtaatataggtcatttccggtttt 49300783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 520 - 565
Target Start/End: Original strand, 21853561 - 21853606
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcatttctggtttt 565  Q
    ||||||||||||||||  ||||||||||||||||||||| ||||||    
T  21853561 ggttaatagtgttttaccccctataatataggtcatttccggtttt 21853606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 558
Target Start/End: Original strand, 11336291 - 11336329
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcatttc 558  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  11336291 ggttaatagtgttttatcccctataatataggtcatttc 11336329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 558
Target Start/End: Original strand, 11494310 - 11494348
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcatttc 558  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  11494310 ggttaatagtgttttatcccctataatataggtcatttc 11494348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 565
Target Start/End: Complemental strand, 1824561 - 1824516
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcatttctggtttt 565  Q
    ||||||||||||||| | |||| |||||||||||||||| ||||||    
T  1824561 ggttaatagtgttttcacccctgtaatataggtcatttccggtttt 1824516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 520 - 568
Target Start/End: Original strand, 972842 - 972890
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcatttctggttttttc 568  Q
    ||||||| ||||||||  |||| ||||||||||||||| ||||||||||    
T  972842 ggttaatggtgttttaccccctgtaatataggtcatttttggttttttc 972890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 565
Target Start/End: Complemental strand, 5864820 - 5864774
Alignment:
Q  520 ggttaatagtgttttaatccc-tataatataggtcatttctggtttt 565  Q
    |||||||||||||||| |||| |||||||||||||||||| ||||||    
T  5864820 ggttaatagtgttttactcccctataatataggtcatttccggtttt 5864774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 566
Target Start/End: Original strand, 24478025 - 24478071
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcatttctggttttt 566  Q
    ||||||||||||||||  |||| |||||||||||||||| |||||||    
T  24478025 ggttaatagtgttttaccccctgtaatataggtcatttccggttttt 24478071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 557
Target Start/End: Complemental strand, 24233666 - 24233629
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcattt 557  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  24233666 ggttaatagtgttttaccccctataatataggtcattt 24233629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 557
Target Start/End: Complemental strand, 38608040 - 38608003
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcattt 557  Q
    |||||||||||||||  |||||||||||||||||||||    
T  38608040 ggttaatagtgtttttctccctataatataggtcattt 38608003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0430 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0430
Description:

Target: scaffold0430; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 565
Target Start/End: Complemental strand, 12857 - 12812
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcatttctggtttt 565  Q
    ||||||||||||||||  |||| |||||||||||||||| ||||||    
T  12857 ggttaatagtgttttaccccctttaatataggtcatttccggtttt 12812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 557
Target Start/End: Complemental strand, 2778 - 2741
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcattt 557  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  2778 ggttaatagtgttttaccccctataatataggtcattt 2741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 565
Target Start/End: Complemental strand, 63405 - 63360
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcatttctggtttt 565  Q
    ||||||||||||||||  |||| |||||||||||||||| ||||||    
T  63405 ggttaatagtgttttaccccctgtaatataggtcatttccggtttt 63360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 565
Target Start/End: Original strand, 25653705 - 25653750
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcatttctggtttt 565  Q
    ||||||||||||||||  |||| ||||||||||||||| |||||||    
T  25653705 ggttaatagtgttttaccccctgtaatataggtcatttttggtttt 25653750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 565
Target Start/End: Original strand, 34227328 - 34227373
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcatttctggtttt 565  Q
    ||||||||||||||||  |||| |||||||||||||||| ||||||    
T  34227328 ggttaatagtgttttaccccctgtaatataggtcatttccggtttt 34227373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 565
Target Start/End: Original strand, 4413928 - 4413973
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcatttctggtttt 565  Q
    ||||||||||||||||  |||| |||||||||||||||| ||||||    
T  4413928 ggttaatagtgttttaccccctgtaatataggtcatttccggtttt 4413973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 520 - 565
Target Start/End: Complemental strand, 12148282 - 12148237
Alignment:
Q  520 ggttaatagtgttttaatccctataatataggtcatttctggtttt 565  Q
    ||||||||||||||||  |||| |||||||||||||||| ||||||    
T  12148282 ggttaatagtgttttaccccctgtaatataggtcatttccggtttt 12148237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 528 - 568
Target Start/End: Complemental strand, 32717062 - 32717022
Alignment:
Q  528 gtgttttaatccctataatataggtcatttctggttttttc 568  Q
    ||||||||  |||||||||||||||||||| ||||||||||    
T  32717062 gtgttttaccccctataatataggtcatttttggttttttc 32717022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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