View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21128_low_10 (Length: 453)
Name: NF21128_low_10
Description: NF21128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21128_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 22 - 303
Target Start/End: Original strand, 3702930 - 3703212
Alignment:
| Q |
22 |
gtggctttgtataagataagatgtatggttagattcagagttgtaactcaattatatacactttcatagccaaataagagatcaattaataaaa-ttgca |
120 |
Q |
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| T |
3702930 |
gtggctttgtataagataagatgtatggttagattcagagttgtaactcaattatatacactttcatagccaaataagagatcaattaataaaaattgca |
3703029 |
T |
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| Q |
121 |
acattcttttgtttcatgtattattttgtatcattcatagtttacaatttatctgaagatcagttgatatagttaagttacatcagtattttaaaagcac |
220 |
Q |
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| T |
3703030 |
acattcttttctttcatgtattattttgtatcattcatagtttacaatttatctgaagatcagttgatatagttaagttacatcagtattttaaaagcac |
3703129 |
T |
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| Q |
221 |
acttcttaataatacttgttatcaagatatttgatagtccatgccaataataaaatctaacttctgcaaatgtatacacacaa |
303 |
Q |
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| T |
3703130 |
acttcttaataatacttcttatcaagatatttgatagtccatgccaataataaaatctaacttctgcaaatgtatacatacaa |
3703212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 86 - 215
Target Start/End: Original strand, 3699346 - 3699475
Alignment:
| Q |
86 |
catagccaaataagagatcaattaataaaattgcaacattcttttgtttcatgtattattttgtatcattcatagtttacaatttatctgaagatcagtt |
185 |
Q |
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| T |
3699346 |
catagccaaataagagatcaattaataaaattgcaacattcttttgtttcatggattattttgtatcattcctagtttacaatttattagaagatcaatt |
3699445 |
T |
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| Q |
186 |
gatatagttaagttacatcagtattttaaa |
215 |
Q |
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| T |
3699446 |
gatatagttcagttacatcattgttttaaa |
3699475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 419
Target Start/End: Original strand, 3703386 - 3703420
Alignment:
| Q |
385 |
tcacttgcatcattccttctaccacatatgttacc |
419 |
Q |
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| T |
3703386 |
tcacttgcatcattccctctaccacatatgttacc |
3703420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 3699255 - 3699283
Alignment:
| Q |
19 |
gaagtggctttgtataagataagatgtat |
47 |
Q |
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| T |
3699255 |
gaagtggctttgtataagataagatgtat |
3699283 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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