View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21128_low_12 (Length: 428)

Name: NF21128_low_12
Description: NF21128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21128_low_12
NF21128_low_12
[»] chr2 (6 HSPs)
chr2 (130-250)||(12853325-12853444)
chr2 (337-413)||(6707558-6707634)
chr2 (337-413)||(12853530-12853606)
chr2 (145-250)||(6707719-6707823)
chr2 (130-250)||(23178102-23178223)
chr2 (130-250)||(23589359-23589480)
[»] chr1 (5 HSPs)
chr1 (145-278)||(26055663-26055795)
chr1 (337-413)||(26055531-26055607)
chr1 (173-242)||(1616476-1616544)
chr1 (156-196)||(50678686-50678726)
chr1 (166-214)||(25786791-25786838)
[»] chr3 (3 HSPs)
chr3 (337-413)||(11220065-11220141)
chr3 (130-250)||(11219860-11219977)
chr3 (166-214)||(42633135-42633182)
[»] scaffold1974 (1 HSPs)
scaffold1974 (145-250)||(196-299)
[»] scaffold1878 (1 HSPs)
scaffold1878 (145-250)||(975-1078)
[»] scaffold0290 (1 HSPs)
scaffold0290 (145-250)||(9108-9211)
[»] chr6 (1 HSPs)
chr6 (145-250)||(34083791-34083895)
[»] chr8 (1 HSPs)
chr8 (151-250)||(45541956-45542054)
[»] scaffold0051 (1 HSPs)
scaffold0051 (151-245)||(39468-39561)
[»] chr5 (2 HSPs)
chr5 (130-203)||(21387982-21388054)
chr5 (156-250)||(18694064-18694154)
[»] chr4 (1 HSPs)
chr4 (145-276)||(44303115-44303239)
[»] scaffold0007 (1 HSPs)
scaffold0007 (166-214)||(145515-145562)


Alignment Details
Target: chr2 (Bit Score: 83; Significance: 4e-39; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 130 - 250
Target Start/End: Original strand, 12853325 - 12853444
Alignment:
Q  130 gaattaaaatcctgattttcttctacaaaaatccagaaatcatcatcaatagcagcaacaacacatcaagaaatcaaattcaaccnnnnnnnaattcttt 229  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||       ||||||||    
T  12853325 gaattaaaatcctgatttttttctacaaaaatctagaaatcatcatcaatatcagcaacaacacatcaagaaatcaaattcaacc-ttttttaattcttt 12853423  T
Q  230 tcatcatcatcatcatgaatt 250  Q
    |||||||||||||||||||||    
T  12853424 tcatcatcatcatcatgaatt 12853444  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 337 - 413
Target Start/End: Complemental strand, 6707634 - 6707558
Alignment:
Q  337 ttatctctccttgttgcatgattctaaatcaaacacaacaccacacccaacaccgaaacacacaaattagatggaac 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6707634 ttatctctccttgttgcatgattctaaatcaaacacaacaccacacccaacaccgaaacacacaaattagatggaac 6707558  T

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Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 337 - 413
Target Start/End: Original strand, 12853530 - 12853606
Alignment:
Q  337 ttatctctccttgttgcatgattctaaatcaaacacaacaccacacccaacaccgaaacacacaaattagatggaac 413  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12853530 ttatctctccttgttgcatgattctaaatcaaacacaacaccacacccaacaccgaaacacacaaattagatggaac 12853606  T

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Target: chr2; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 145 - 250
Target Start/End: Complemental strand, 6707823 - 6707719
Alignment:
Q  145 ttttcttctacaaaaatccagaaatcatcatcaatagcagcaacaacacatcaagaaatcaaattcaaccnnnnnnnaattcttttcatcatcatcatca 244  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||        ||||||||||||||||||||||    
T  6707823 tttttttctacaaaaatccagaaatcatcatcaatagcagcaacaacacatcaaaaaatcaaattcaaccctttttt-attcttttcatcatcatcatca 6707725  T
Q  245 tgaatt 250  Q
    ||||||    
T  6707724 tgaatt 6707719  T

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Target: chr2; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 130 - 250
Target Start/End: Original strand, 23178102 - 23178223
Alignment:
Q  130 gaattaaaatcctgattttctt---ctacaaaaatccagaaatcatcatcaatagcagcaacaacacatcaagaaatcaaattcaaccnnnnnnnaattc 226  Q
    ||||||||| || |||||||||   |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||        ||||    
T  23178102 gaattaaaacccagattttctttttctacaaaaatccagaaatcatcatcaatag-agtaacaacacatcaagaaatcaaattcaaccctttttg-attc 23178199  T
Q  227 ttttcatcatcatcatcatgaatt 250  Q
    ||||||||||||||||||||||||    
T  23178200 ttttcatcatcatcatcatgaatt 23178223  T

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Target: chr2; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 130 - 250
Target Start/End: Original strand, 23589359 - 23589480
Alignment:
Q  130 gaattaaaatcctgattttctt---ctacaaaaatccagaaatcatcatcaatagcagcaacaacacatcaagaaatcaaattcaaccnnnnnnnaattc 226  Q
    ||||||||| || |||||||||   |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||        ||||    
T  23589359 gaattaaaacccagattttctttttctacaaaaatccagaaatcatcatcaatag-agtaacaacacatcaagaaatcaaattcaaccctttttg-attc 23589456  T
Q  227 ttttcatcatcatcatcatgaatt 250  Q
    ||||||||||||||||||||||||    
T  23589457 ttttcatcatcatcatcatgaatt 23589480  T

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Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 145 - 278
Target Start/End: Complemental strand, 26055795 - 26055663
Alignment:
Q  145 ttttcttctacaaaaatccagaaatcatcatcaatagcagcaacaacacatcaagaaatcaaattcaaccnnnnnnnaattcttttcatcatcatcatca 244  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||    
T  26055795 tttttttctacaaaaatccagaaatcatcatcaatagcagcaacaacacatcaagaaatcaaattcaaccctttttg-attcttttcatcatcatcatca 26055697  T
Q  245 tgaattnnnnnnnntggatttctccaaattcagc 278  Q
    ||||||        ||||||||||||||||||||    
T  26055696 tgaattaaaaaaaatggatttctccaaattcagc 26055663  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 337 - 413
Target Start/End: Complemental strand, 26055607 - 26055531
Alignment:
Q  337 ttatctctccttgttgcatgattctaaatcaaacacaacaccacacccaacaccgaaacacacaaattagatggaac 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26055607 ttatctctccttgttgcatgattctaaatcaaacacaacaccacacccaacaccgaaacgcacaaattagatggaac 26055531  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 1616476 - 1616544
Alignment:
Q  173 catcaatagcagcaacaacacatcaagaaatcaaattcaaccnnnnnnnaattcttttcatcatcatcat 242  Q
    |||||||||||||||||||||||||| |||||||||||||||       |||||||||||||||||||||    
T  1616476 catcaatagcagcaacaacacatcaaaaaatcaaattcaacc-cttttgaattcttttcatcatcatcat 1616544  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 196
Target Start/End: Original strand, 50678686 - 50678726
Alignment:
Q  156 aaaaatccagaaatcatcatcaatagcagcaacaacacatc 196  Q
    |||||||||||||||||||||| |||||| |||||||||||    
T  50678686 aaaaatccagaaatcatcatcagtagcagaaacaacacatc 50678726  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 25786838 - 25786791
Alignment:
Q  166 aaatcatcatcaatagcagcaacaacacatcaagaaatcaaattcaacc 214  Q
    ||||||||||||||||| ||| ||||||||| |||||||| ||||||||    
T  25786838 aaatcatcatcaatagc-gcatcaacacatcgagaaatcatattcaacc 25786791  T

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Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 337 - 413
Target Start/End: Original strand, 11220065 - 11220141
Alignment:
Q  337 ttatctctccttgttgcatgattctaaatcaaacacaacaccacacccaacaccgaaacacacaaattagatggaac 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  11220065 ttatctctccttgttgcatgattctaaatcaaacacaacaccacacccaacaccgaatcgcacaaattagatggaac 11220141  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 130 - 250
Target Start/End: Original strand, 11219860 - 11219977
Alignment:
Q  130 gaattaaaatcctgattttcttctacaaaaatccagaaatcatcatcaatagcagcaacaacacatcaagaaatcaaattcaaccnnnnnnnaattcttt 229  Q
    ||||||||| ||||||||| ||||| ||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||        |||||||    
T  11219860 gaattaaaaccctgatttttttctaaaaaaatccagaaatcatcatctatagcagcaaca--acatcaagaaatcaaattcaaccatttttg-attcttt 11219956  T
Q  230 tcatcatcatcatcatgaatt 250  Q
    |||||||||||||||||||||    
T  11219957 tcatcatcatcatcatgaatt 11219977  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 42633135 - 42633182
Alignment:
Q  166 aaatcatcatcaatagcagcaacaacacatcaagaaatcaaattcaacc 214  Q
    ||||||||||||||||| ||| |||||||||||||||||| ||||||||    
T  42633135 aaatcatcatcaatagc-gcatcaacacatcaagaaatcatattcaacc 42633182  T

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Target: scaffold1974 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold1974
Description:

Target: scaffold1974; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 145 - 250
Target Start/End: Complemental strand, 299 - 196
Alignment:
Q  145 ttttcttctacaaaaatccagaaatcatcatcaatagcagcaacaacacatcaagaaatcaaattcaaccnnnnnnnaattcttttcatcatcatcatca 244  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  299 tttttttctacaaaaatccagaaatcatcatcaatag-agcaacaacacatcaagaaatcaaattcaacc-ctttttaattcttttcatcatcatcatca 202  T
Q  245 tgaatt 250  Q
    ||||||    
T  201 tgaatt 196  T

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Target: scaffold1878 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold1878
Description:

Target: scaffold1878; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 145 - 250
Target Start/End: Original strand, 975 - 1078
Alignment:
Q  145 ttttcttctacaaaaatccagaaatcatcatcaatagcagcaacaacacatcaagaaatcaaattcaaccnnnnnnnaattcttttcatcatcatcatca 244  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  975 tttttttctacaaaaatccagaaatcatcatcaatag-agcaacaacacatcaagaaatcaaattcaacc-ctttttaattcttttcatcatcatcatca 1072  T
Q  245 tgaatt 250  Q
    ||||||    
T  1073 tgaatt 1078  T

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Target: scaffold0290 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 145 - 250
Target Start/End: Complemental strand, 9211 - 9108
Alignment:
Q  145 ttttcttctacaaaaatccagaaatcatcatcaatagcagcaacaacacatcaagaaatcaaattcaaccnnnnnnnaattcttttcatcatcatcatca 244  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  9211 tttttttctacaaaaatccagaaatcatcatcaatag-agcaacaacacatcaagaaatcaaattcaacc-ctttttaattcttttcatcatcatcatca 9114  T
Q  245 tgaatt 250  Q
    ||||||    
T  9113 tgaatt 9108  T

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Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 145 - 250
Target Start/End: Complemental strand, 34083895 - 34083791
Alignment:
Q  145 ttttcttctacaaaaatccagaaatcatcatcaatagcagcaacaacacatcaagaaatcaaattcaaccnnnnnnnaattcttttcatcatcatcatca 244  Q
    |||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||    
T  34083895 tttttttctacaaaaatctagaaattatcatcaatagcagcaacaacacatcaagaaatcaaattcaaccctttttt-attcttttcatcatcatcatca 34083797  T
Q  245 tgaatt 250  Q
    ||||||    
T  34083796 tgaatt 34083791  T

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Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 151 - 250
Target Start/End: Original strand, 45541956 - 45542054
Alignment:
Q  151 tctacaaaaatccagaaatcatcatcaatagcagcaacaacacatcaagaaatcaaattcaaccnnnnnnnaattcttttcatcatcatcatcatgaatt 250  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||        ||||||||||||||||||||||||||||    
T  45541956 tctacaaaaatcaagaaatcatcatcaatagcagcaacaacacatcaagaaatcaaaatcaaccatttttt-attcttttcatcatcatcatcatgaatt 45542054  T

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Target: scaffold0051 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 151 - 245
Target Start/End: Complemental strand, 39561 - 39468
Alignment:
Q  151 tctacaaaaatccagaaatcatcatcaatagcagcaacaacacatcaagaaatcaaattcaaccnnnnnnnaattcttttcatcatcatcatcat 245  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||        |||||||||||||||||||||||    
T  39561 tctacaaaaatcaagaaatcatcatcaatagcagcaacaacacatcaagaaatcaaagtcaaccctttttt-attcttttcatcatcatcatcat 39468  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 21387982 - 21388054
Alignment:
Q  130 gaattaaaatcctgattttcttctacaaaaatccagaaatcatcatcaatagcagcaacaacacatcaagaaat 203  Q
    ||||||||| || |||||| ||||  |||||||||||||||||| |||||||||||||||||||||||| ||||    
T  21387982 gaattaaaacccagatttt-ttcttaaaaaatccagaaatcatcgtcaatagcagcaacaacacatcaataaat 21388054  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 250
Target Start/End: Original strand, 18694064 - 18694154
Alignment:
Q  156 aaaaatccagaaatcatcatcaatagcagcaacaacacatcaagaaatcaaattcaaccnnnnnnnaattcttttcatcatcatcatcatgaatt 250  Q
    |||||||||||||||||||||| |||||   |||||||||||| |||| |  |||| ||       |||||||||||||||||||||||||||||    
T  18694064 aaaaatccagaaatcatcatcagtagca---acaacacatcaataaattattttcatcccttttt-aattcttttcatcatcatcatcatgaatt 18694154  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 145 - 276
Target Start/End: Original strand, 44303115 - 44303239
Alignment:
Q  145 ttttcttctacaaaaatccagaaatcatcatcaatagcagcaacaacacatcaagaaatcaaattcaaccnnnnnnnaattcttttcatcatcatcatca 244  Q
    |||| ||||| ||||| |||||||||||||||| |||||||||||||||      |||||||||||||||       ||||||||||||||||||| |||    
T  44303115 tttttttctaaaaaaaaccagaaatcatcatcattagcagcaacaacac------aaatcaaattcaacc-cattttaattcttttcatcatcatcttca 44303207  T
Q  245 tgaattnnnnnnnntggatttctccaaattca 276  Q
    ||||||        ||||||||||||||||||    
T  44303208 tgaattaaaaacaatggatttctccaaattca 44303239  T

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Target: scaffold0007 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 145562 - 145515
Alignment:
Q  166 aaatcatcatcaatagcagcaacaacacatcaagaaatcaaattcaacc 214  Q
    ||||||||||||||||| ||| ||||||||| |||||||| ||||||||    
T  145562 aaatcatcatcaatagc-gcatcaacacatcgagaaatcatattcaacc 145515  T

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