View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21128_low_2 (Length: 656)

Name: NF21128_low_2
Description: NF21128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21128_low_2
NF21128_low_2
[»] chr6 (4 HSPs)
chr6 (505-562)||(28699333-28699390)
chr6 (518-550)||(34925139-34925171)
chr6 (163-237)||(26210747-26210821)
chr6 (517-550)||(34929503-34929536)
[»] chr8 (2 HSPs)
chr8 (164-220)||(27505696-27505752)
chr8 (163-237)||(29802714-29802788)
[»] chr3 (3 HSPs)
chr3 (187-237)||(9281470-9281520)
chr3 (163-220)||(22755517-22755574)
chr3 (182-220)||(28389278-28389316)
[»] chr5 (1 HSPs)
chr5 (151-231)||(34278746-34278827)
[»] chr4 (2 HSPs)
chr4 (163-220)||(20651426-20651483)
chr4 (209-237)||(19525946-19525974)


Alignment Details
Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 505 - 562
Target Start/End: Complemental strand, 28699390 - 28699333
Alignment:
Q  505 aacacattcaaatagttatataggaaatagtacagaataacaagaccaagattccaga 562  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28699390 aacacattcaaatagctatataggaaatagtacagaataacaagaccaagattccaga 28699333  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 518 - 550
Target Start/End: Original strand, 34925139 - 34925171
Alignment:
Q  518 agttatataggaaatagtacagaataacaagac 550  Q
    |||||||||||||||||||||||||||||||||    
T  34925139 agttatataggaaatagtacagaataacaagac 34925171  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 163 - 237
Target Start/End: Complemental strand, 26210821 - 26210747
Alignment:
Q  163 aaaataaggtcaaattatcttatatgaatagtacacattttgaaattaggtcatttaatataggacggagggagt 237  Q
    ||||||||||||||| || ||||| ||| | ||   ||||| |||||||||||||||||||||||  ||||||||    
T  26210821 aaaataaggtcaaatcatgttatacgaacaatatgtatttttaaattaggtcatttaatataggaaagagggagt 26210747  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 550
Target Start/End: Original strand, 34929503 - 34929536
Alignment:
Q  517 tagttatataggaaatagtacagaataacaagac 550  Q
    |||| |||||||||||||||||||||||||||||    
T  34929503 tagtcatataggaaatagtacagaataacaagac 34929536  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 27505752 - 27505696
Alignment:
Q  164 aaataaggtcaaattatcttatatgaatagtacacattttgaaattaggtcatttaa 220  Q
    |||||||||||||  || ||||||||||||||||| |||| ||||||||||||||||    
T  27505752 aaataaggtcaaagcatgttatatgaatagtacacttttttaaattaggtcatttaa 27505696  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 237
Target Start/End: Original strand, 29802714 - 29802788
Alignment:
Q  163 aaaataaggtcaaattatcttatatgaatagtacacattttgaaattaggtcatttaatataggacggagggagt 237  Q
    |||||| |||||||  || ||||||||||| |||||||||| |||||||||||| ||| || ||| |||||||||    
T  29802714 aaaatatggtcaaaacatattatatgaataatacacattttcaaattaggtcatataaaatgggatggagggagt 29802788  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 9281470 - 9281520
Alignment:
Q  187 tgaatagtacacattttgaaattaggtcatttaatataggacggagggagt 237  Q
    ||||||||| ||||||| |||||||||||||||| || |||||||||||||    
T  9281470 tgaatagtagacattttcaaattaggtcatttaaaatgggacggagggagt 9281520  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 22755574 - 22755517
Alignment:
Q  163 aaaataaggtcaaattatcttatatgaatagtacacattttgaaattaggtcatttaa 220  Q
    |||||| |||||||  || |||| |||||||| |||||||||||||||||||||||||    
T  22755574 aaaatatggtcaaaacatgttatgtgaatagtgcacattttgaaattaggtcatttaa 22755517  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 28389278 - 28389316
Alignment:
Q  182 ttatatgaatagtacacattttgaaattaggtcatttaa 220  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  28389278 ttatatgaatagtacacatttttaaagtaggtcatttaa 28389316  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 231
Target Start/End: Original strand, 34278746 - 34278827
Alignment:
Q  151 atattttagtagaaaa-taaggtcaaattatcttatatgaatagtacacattttgaaattaggtcatttaatataggacgga 231  Q
    |||| ||||||||||| ||||||||||  || ||||||||| | |||||||||| |||||||||||| ||| || |||||||    
T  34278746 atatattagtagaaaaataaggtcaaaacatgttatatgaacaatacacattttaaaattaggtcatataaaatgggacgga 34278827  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 20651483 - 20651426
Alignment:
Q  163 aaaataaggtcaaattatcttatatgaatagtacacattttgaaattaggtcatttaa 220  Q
    |||||| | ||||| ||| ||||||||||||| |||||||| ||||||| ||||||||    
T  20651483 aaaatatgatcaaaatatattatatgaatagttcacatttttaaattagatcatttaa 20651426  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 209 - 237
Target Start/End: Original strand, 19525946 - 19525974
Alignment:
Q  209 taggtcatttaatataggacggagggagt 237  Q
    |||||||||||||||||||||||||||||    
T  19525946 taggtcatttaatataggacggagggagt 19525974  T

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