View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21128_low_23 (Length: 317)
Name: NF21128_low_23
Description: NF21128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21128_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 217 - 304
Target Start/End: Original strand, 31787068 - 31787155
Alignment:
| Q |
217 |
taagtaaccaaaccattcagttgcatgcaatttcaaaccaacccaataatttcccaaacaagtattttctttccctctttcccgcttc |
304 |
Q |
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| T |
31787068 |
taagtaaccaaaccattcagttgcatgcaatttcaaaccaacccaataatttcccaaacaagtattttctttccctctttcccgcttc |
31787155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 201
Target Start/End: Complemental strand, 33648930 - 33648771
Alignment:
| Q |
37 |
accccattaatcttttcatttatttgtgggtgggtagtgattcattaatgcctattaatgtaaagtcacaatatctgtctttttcacattgaacgtgggt |
136 |
Q |
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| T |
33648930 |
acccaattaatcttttcattt---tgggggtgagtgctaattcattaatgcctattaatgtaaaatcgtcata-ctttgaatttcacattgaatgtgggt |
33648835 |
T |
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| Q |
137 |
gacattttcttcataaaattatgaaaaaatataaatattttaatgagtctaacaattttaccaaa |
201 |
Q |
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| T |
33648834 |
gacgttttcttcataaaattatga-aaaatataaatagtttgatgagggtaacaattttaccaaa |
33648771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 217 - 271
Target Start/End: Original strand, 31783528 - 31783584
Alignment:
| Q |
217 |
taagtaaccaaaccattcagttgca--tgcaatttcaaaccaacccaataatttccc |
271 |
Q |
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| T |
31783528 |
taagtaaccaaaccattcagttacaattccaatttcaaaccaacccaataacttccc |
31783584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 288
Target Start/End: Complemental strand, 32807030 - 32806964
Alignment:
| Q |
221 |
taaccaaaccattcagttgcatgcaatttcaaaccaacccaataatttcccaaacaagtattttcttt |
288 |
Q |
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| T |
32807030 |
taaccaaaccattcagttgcatgcaa-ttccaaccaactcaataacttcctaaacaagtcttctcttt |
32806964 |
T |
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