View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21128_low_24 (Length: 316)

Name: NF21128_low_24
Description: NF21128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21128_low_24
NF21128_low_24
[»] chr3 (14 HSPs)
chr3 (2-299)||(22449067-22449373)
chr3 (132-299)||(22437937-22438118)
chr3 (132-294)||(22446275-22446444)
chr3 (136-237)||(22448945-22449046)
chr3 (132-239)||(22359293-22359404)
chr3 (132-239)||(22369195-22369306)
chr3 (2-104)||(22449289-22449390)
chr3 (15-104)||(22437920-22438008)
chr3 (1-102)||(22439964-22440064)
chr3 (145-299)||(22439979-22440142)
chr3 (1-104)||(22446257-22446353)
chr3 (201-298)||(22449044-22449150)
chr3 (1-29)||(22359281-22359309)
chr3 (1-29)||(22369183-22369211)


Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 2 - 299
Target Start/End: Original strand, 22449067 - 22449373
Alignment:
Q  2 aatctttaacctgagttaacaaagtctttctttcgaccaagactttaaaatggttaaagtacacctcacattgcatagccaatttgcccattcaaaacta 101  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22449067 aatctttaacctgagttaacaaagtctttcttttgaccaagactttaaaatggttaaagtacacctcacattgcatagccaatttgcccattcaaaacta 22449166  T
Q  102 aatggttaaagtacacctcacactgcacctgagtattaactctaattaaaaaagttagtcttctctttaactagtgacagttgaatcaattgggagtatt 201  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  22449167 aatggttaaagtacacctcacactgcacctgagcattaactctaattaaaaaagttagtcttctctttaactagtgacagttgaatcaattgggagtata 22449266  T
Q  202 gaacttaaaccatggttgaaataatctttaacctg---------agtctttcttttgactaagactttaaaatgattaaattacaccttacattgcatag 292  Q
    ||||| |||||||||||||||||||||||||||||         |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22449267 gaactgaaaccatggttgaaataatctttaacctgagttaacaaagtctttcttttgactaacactttaaaatgattaaattacaccttacattgcatag 22449366  T
Q  293 ccaattg 299  Q
    |||||||    
T  22449367 ccaattg 22449373  T

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Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 132 - 299
Target Start/End: Complemental strand, 22438118 - 22437937
Alignment:
Q  132 gagtattaactctaattaaaaaagttagtcttctctttaactagtgacagttgaatcaattgggagtattgaacttaaaccatggttgaaataatcttta 231  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  22438118 gagtattaactctaattaacaaagttagtcttctctttaactagtgacagttgaatcaattgggagtattaaacttaaaccatggttgaaacaatcttta 22438019  T
Q  232 acctg--------------agtctttcttttgactaagactttaaaatgattaaattacaccttacattgcatagccaattg 299  Q
    ||| |              ||||||||||||||||||| |||||||||| ||||| ||||||| ||||||||||||||||||    
T  22438018 accagagttaagttaacaaagtctttcttttgactaaggctttaaaatggttaaactacacctcacattgcatagccaattg 22437937  T

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Target: chr3; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 132 - 294
Target Start/End: Complemental strand, 22446444 - 22446275
Alignment:
Q  132 gagtattaactctaattaaaaaagttagtcttctctttaactagtgacagttgaatcaattgggagtattgaacttaaaccatggttgaaataatcttta 231  Q
    ||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  22446444 gagtattaattctaattaacaaagttagtcttttctttaactagtgacagttgaatcaatttggagtattgaacttaaaccatggttgaaacaatcttta 22446345  T
Q  232 acctg-------agtctttcttttgactaagactttaaaatgattaaattacaccttacattgcatagcc 294  Q
    ||| |       ||| ||||||||||| ||| |||||||||| ||||| ||||||| |||||||||||||    
T  22446344 accagttaacaaagtttttcttttgaccaagtctttaaaatggttaaactacacctcacattgcatagcc 22446275  T

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Target: chr3; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 136 - 237
Target Start/End: Original strand, 22448945 - 22449046
Alignment:
Q  136 attaactctaattaaaaaagttagtcttctctttaactagtgacagttgaatcaattgggagtattgaacttaaaccatggttgaaataatctttaacct 235  Q
    ||||||||||||||| |||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22448945 attaactctaattaagaaagctagtcttctctttaactagtgattgttgaatcaattgggagtattgaacttaaaccatggttgaaacaatctttaacct 22449044  T
Q  236 ga 237  Q
    ||    
T  22449045 ga 22449046  T

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Target: chr3; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 132 - 239
Target Start/End: Complemental strand, 22359404 - 22359293
Alignment:
Q  132 gagtattaactctaattaaaaaagttagtcttctctttaactagtgacagttgaatcaattgggagta----ttgaacttaaaccatggttgaaataatc 227  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |    || |||||||||||||||||||| ||||    
T  22359404 gagtattaactctaattaacaaagttagtcttctctttaactagtgacagttgaatcaattgggagaaagaattaaacttaaaccatggttgaaacaatc 22359305  T
Q  228 tttaacctgagt 239  Q
    ||||||||||||    
T  22359304 tttaacctgagt 22359293  T

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Target: chr3; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 132 - 239
Target Start/End: Complemental strand, 22369306 - 22369195
Alignment:
Q  132 gagtattaactctaattaaaaaagttagtcttctctttaactagtgacagttgaatcaattgggagta----ttgaacttaaaccatggttgaaataatc 227  Q
    ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |    || |||||||||||||||||||| ||||    
T  22369306 gagtattaactctaattaacaaagttagtcttttctttaactagtgacagttgaatcaattgggagaaagaattaaacttaaaccatggttgaaacaatc 22369207  T
Q  228 tttaacctgagt 239  Q
    ||||||||||||    
T  22369206 tttaacctgagt 22369195  T

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Target: chr3; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 2 - 104
Target Start/End: Original strand, 22449289 - 22449390
Alignment:
Q  2 aatctttaacctgagttaacaaagtctttctttcgaccaagactttaaaatggttaaagtacacctcacattgcatagccaatttgcccattcaaaacta 101  Q
    ||||||||||||||||||||||||||||||||| ||| || ||||||||||| ||||| ||||||| ||||||||||||||| |||||||||||||||||    
T  22449289 aatctttaacctgagttaacaaagtctttcttttgactaacactttaaaatgattaaattacaccttacattgcatagccaa-ttgcccattcaaaacta 22449387  T
Q  102 aat 104  Q
    |||    
T  22449388 aat 22449390  T

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Target: chr3; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 15 - 104
Target Start/End: Complemental strand, 22438008 - 22437920
Alignment:
Q  15 agttaacaaagtctttctttcgaccaagactttaaaatggttaaagtacacctcacattgcatagccaatttgcccattcaaaactaaat 104  Q
    |||||||||||||||||||| ||| ||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  22438008 agttaacaaagtctttcttttgactaaggctttaaaatggttaaactacacctcacattgcatagccaa-ttgcccattcaaaactaaat 22437920  T

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Target: chr3; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 22440064 - 22439964
Alignment:
Q  1 caatctttaacctgagttaacaaagtctttctttcgaccaagactttaaaatggttaaagtacacctcacattgcatagccaatttgcccattcaaaact 100  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||   |||||||||||||||||||| ||| | ||||||||||    
T  22440064 caatctttaacctgagttaacaaagtctttcttttgtccaagactttaaaatggttaaagattacctcacattgcatagccaa-ttggcgattcaaaact 22439966  T
Q  101 aa 102  Q
    ||    
T  22439965 aa 22439964  T

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Target: chr3; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 145 - 299
Target Start/End: Complemental strand, 22440142 - 22439979
Alignment:
Q  145 aattaaaaaagttagtcttctctttaactagtgacagttgaatcaattgggagtattgaacttaaaccatggttgaaataatctttaacctg-------- 236  Q
    |||||| |||| || |||||||||||||||||||  ||||||||| |||||| |||| ||||||||||||||| |||| |||||||||||||            
T  22440142 aattaacaaagctaatcttctctttaactagtgattgttgaatcagttgggattattaaacttaaaccatggtggaaacaatctttaacctgagttaaca 22440043  T
Q  237 -agtctttcttttgactaagactttaaaatgattaaattacaccttacattgcatagccaattg 299  Q
     ||||||||||||| | |||||||||||||| |||||    |||| ||||||||||||||||||    
T  22440042 aagtctttcttttgtccaagactttaaaatggttaaagattacctcacattgcatagccaattg 22439979  T

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Target: chr3; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 22446353 - 22446257
Alignment:
Q  1 caatctttaacctgagttaacaaagtctttctttcgaccaagactttaaaatggttaaagtacacctcacattgcatagccaatttgcccattcaaaact 100  Q
    ||||||||||||  |||||||||||| ||||||| ||||||| |||||||||||||||| |||||||||||||||||||||     ||||||||||||||    
T  22446353 caatctttaacc--agttaacaaagtttttcttttgaccaagtctttaaaatggttaaactacacctcacattgcatagcc-----gcccattcaaaact 22446261  T

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Target: chr3; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 298
Target Start/End: Original strand, 22449044 - 22449150
Alignment:
Q  201 tgaacttaaaccatggttgaaataatctttaacctg---------agtctttcttttgactaagactttaaaatgattaaattacaccttacattgcata 291  Q
    |||||||| |||||||||||||||||||||||||||         ||||||||||||||| |||||||||||||| ||||| ||||||| ||||||||||    
T  22449044 tgaacttacaccatggttgaaataatctttaacctgagttaacaaagtctttcttttgaccaagactttaaaatggttaaagtacacctcacattgcata 22449143  T
Q  292 gccaatt 298  Q
    |||||||    
T  22449144 gccaatt 22449150  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 22359309 - 22359281
Alignment:
Q  1 caatctttaacctgagttaacaaagtctt 29  Q
    |||||||||||||||||||||||||||||    
T  22359309 caatctttaacctgagttaacaaagtctt 22359281  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 22369211 - 22369183
Alignment:
Q  1 caatctttaacctgagttaacaaagtctt 29  Q
    |||||||||||||||||||||||||||||    
T  22369211 caatctttaacctgagttaacaaagtctt 22369183  T

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