View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21128_low_25 (Length: 307)
Name: NF21128_low_25
Description: NF21128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21128_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 38149831 - 38149550
Alignment:
| Q |
18 |
agaaatagagcttggtaagaagtggttacagttctttgaccaggaacactaccattgcctggctgaatcaagactctgatgaagagattttcatcaatat |
117 |
Q |
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| T |
38149831 |
agaaatagagcttggtaagaagtggttacagttctttgaccaggaacactaccattgcctggctgaatcaagactctgatgaagagattttcatcaatat |
38149732 |
T |
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| Q |
118 |
ttggtgctacttgttgccatctataaagaagtttgtttccaccttgttctagactctttgttactgtgaaaactgtcacagtttttggcacaggaactaa |
217 |
Q |
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| T |
38149731 |
ttggtgctacttgttgccatctataaagaagtttgtttccaccttgttctagactctttgttactgtgaaaactgtcacagtttttggcacaggaactaa |
38149632 |
T |
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| Q |
218 |
tttgatcttccaccagagaataactccgaagctacctcctccgcctcctcttattgcccaaaataggtcttctccctttgct |
299 |
Q |
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| T |
38149631 |
tttgatcttccaccagagaataactccgaagctacctcctccgcctcctcttattgcccaaaataggtcttctcccattgct |
38149550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 89 - 293
Target Start/End: Complemental strand, 38145952 - 38145748
Alignment:
| Q |
89 |
gactctgatgaagagattttcatcaatatttggtgctacttgttgccatctataaagaagtttgtttccaccttgttctagactctttgttactgtgaaa |
188 |
Q |
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| T |
38145952 |
gactctaatgaagagattttcatcaataaaaggtgctacttcttgccatctatgaagaatttttgtagcaccttgttctagagttttagtgacagtaaaa |
38145853 |
T |
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| Q |
189 |
actgtcacagtttttggcacaggaactaatttgatcttccaccagagaataactccgaagctacctcctccgcctcctcttattgcccaaaataggtctt |
288 |
Q |
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| T |
38145852 |
actgtcactgttggtggaacaggaacaagctttatcttccaccaaagaagtataccaaagcttccacctccaccacctcttatagcccaaaatagatcct |
38145753 |
T |
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| Q |
289 |
ctccc |
293 |
Q |
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| T |
38145752 |
ctccc |
38145748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 237
Target Start/End: Original strand, 11786869 - 11787016
Alignment:
| Q |
90 |
actctgatgaagagattttcatcaatatttggtgctacttgttgccatctataaagaagtttgtttccaccttgttctagactctttgttactgtgaaaa |
189 |
Q |
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| T |
11786869 |
actctcataaagagattttcatcaatagttggtgctacttcttgccatttatgaacaatcttacttgcatcttgttctaagcttttggtaacggtaaaaa |
11786968 |
T |
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| Q |
190 |
ctgtcacagtttttggcacaggaactaatttgatcttccaccagagaa |
237 |
Q |
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| T |
11786969 |
ccgtcacggtttttggaacaggaacaagttttatcttccaccaaagaa |
11787016 |
T |
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