View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21128_low_29 (Length: 285)

Name: NF21128_low_29
Description: NF21128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21128_low_29
NF21128_low_29
[»] chr7 (3 HSPs)
chr7 (33-140)||(11508949-11509056)
chr7 (210-266)||(11508823-11508879)
chr7 (210-261)||(18147723-18147775)
[»] chr3 (3 HSPs)
chr3 (37-140)||(9733866-9733967)
chr3 (210-266)||(9733734-9733791)
chr3 (212-263)||(15777454-15777506)
[»] chr6 (1 HSPs)
chr6 (210-261)||(19769149-19769201)
[»] chr4 (2 HSPs)
chr4 (210-261)||(11153736-11153788)
chr4 (212-259)||(13884380-13884428)
[»] chr1 (1 HSPs)
chr1 (210-261)||(12786155-12786207)


Alignment Details
Target: chr7 (Bit Score: 104; Significance: 7e-52; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 33 - 140
Target Start/End: Complemental strand, 11509056 - 11508949
Alignment:
Q  33 ttcaaaaccatataaagtttagaagcaatcagaatccgattgcgagtagtcatggtttttattctcttaaagaaaaatcagaacatcactatatttcaat 132  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11509056 ttcaaaaccatataaagtttagaagtaatcagaatccgattgcgagtagtcatggtttttattctcttaaagaaaaatcagaacatcactatatttcaat 11508957  T
Q  133 cacaaatt 140  Q
    ||||||||    
T  11508956 cacaaatt 11508949  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 11508879 - 11508823
Alignment:
Q  210 cgaatttaatcatagatcatcaaagtaataagaaaataataaaaattaacaaccctt 266  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  11508879 cgaatttaatcatagatcatcaaaggaataagaaaataatgaaaattaacaaccctt 11508823  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 18147775 - 18147723
Alignment:
Q  210 cgaatttaatcatagatc-atcaaagtaataagaaaataataaaaattaacaa 261  Q
    |||||||||||||||||  ||||||| | |||||||| |||||||||||||||    
T  18147775 cgaatttaatcatagatttatcaaaggattaagaaaacaataaaaattaacaa 18147723  T

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Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 9733967 - 9733866
Alignment:
Q  37 aaaccatataaagtttagaagcaatcagaatccgattgcgagtagtcatggtttttattctcttaaagaaaaatcagaacatcactatatttcaatcaca 136  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||| ||||| ||||||||||| ||||||||||| ||    
T  9733967 aaaccatataaagtttagaagtaatcagaatccgattgcaagtagtcatgg-ttttattctcttaaa-aaaaaacagaacatcacaatatttcaatccca 9733870  T
Q  137 aatt 140  Q
    ||||    
T  9733869 aatt 9733866  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 9733791 - 9733734
Alignment:
Q  210 cgaatttaatcatagatcatcaaagtaataagaaaat-aataaaaattaacaaccctt 266  Q
    ||||||||||||||||||||| ||| ||||||||||| ||| ||||||||||||||||    
T  9733791 cgaatttaatcatagatcatcgaaggaataagaaaataaatgaaaattaacaaccctt 9733734  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 15777506 - 15777454
Alignment:
Q  212 aatttaatcatagat-catcaaagtaataagaaaataataaaaattaacaacc 263  Q
    ||||||||||||||| |||||||| |||||||||| | | |||||||||||||    
T  15777506 aatttaatcatagattcatcaaaggaataagaaaacattgaaaattaacaacc 15777454  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 19769201 - 19769149
Alignment:
Q  210 cgaatttaatcatagatc-atcaaagtaataagaaaataataaaaattaacaa 261  Q
    |||||||||||||||||  || |||| | ||||||||||||||||||||||||    
T  19769201 cgaatttaatcatagatttatgaaaggattaagaaaataataaaaattaacaa 19769149  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 11153736 - 11153788
Alignment:
Q  210 cgaatttaatcatagatc-atcaaagtaataagaaaataataaaaattaacaa 261  Q
    |||||||||||||||||  ||||||| | |||||||| |||||||||||||||    
T  11153736 cgaatttaatcatagatttatcaaaggattaagaaaacaataaaaattaacaa 11153788  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 259
Target Start/End: Complemental strand, 13884428 - 13884380
Alignment:
Q  212 aatttaatcatagat-catcaaagtaataagaaaataataaaaattaac 259  Q
    |||||||| |||||| |||||||| |||||||||||||| |||||||||    
T  13884428 aatttaattatagattcatcaaaggaataagaaaataatgaaaattaac 13884380  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 261
Target Start/End: Original strand, 12786155 - 12786207
Alignment:
Q  210 cgaatttaatcatagatc-atcaaagtaataagaaaataataaaaattaacaa 261  Q
    |||||||||||||||||  ||||||| | |||||||| |||||||||||||||    
T  12786155 cgaatttaatcatagatttatcaaaggattaagaaaacaataaaaattaacaa 12786207  T

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