View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21128_low_3 (Length: 612)

Name: NF21128_low_3
Description: NF21128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21128_low_3
NF21128_low_3
[»] chr8 (2 HSPs)
chr8 (124-594)||(43601446-43601916)
chr8 (10-87)||(43601369-43601446)
[»] chr3 (1 HSPs)
chr3 (552-594)||(22239093-22239135)
[»] chr1 (1 HSPs)
chr1 (552-594)||(37560611-37560653)
[»] chr5 (1 HSPs)
chr5 (264-348)||(29259210-29259294)
[»] chr2 (2 HSPs)
chr2 (552-593)||(22436299-22436340)
chr2 (339-403)||(1175999-1176062)
[»] chr4 (1 HSPs)
chr4 (339-411)||(8440677-8440748)


Alignment Details
Target: chr8 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 124 - 594
Target Start/End: Original strand, 43601446 - 43601916
Alignment:
Q  124 taataaaatttgcggttacaaaaaacattttatcaagaatttgagttgttttagaaaataaattgtattatgagcttaactagtttatattccacattgg 223  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  43601446 taataaaatttgcggtttcaaaaaacattttatcaagaatttgagtttttttagaaaataaattgtattatgagcttaactagtttatattccacactgg 43601545  T
Q  224 tttgaattaagaaaaaatgagtaaaatagaggaaataattattagtcttagtagtgttgtggcagttttaagggattacttgcaatgcaagtattgtata 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43601546 tttgaattaagaaaaaatgagtaaaatagaggaaataattattagtcttagtagtgttgtggcagttttaagggattacttgcaatgcaagtattgtata 43601645  T
Q  324 cttttatgtttagcatttgagattggccatatatatgcctcccttgtatcattagagaattgaatgaaataaaaatttcacatcacaacctgaaacctgt 423  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  43601646 cttttatgtttagcatttgagattggccatatatatgcctcccttgtatcattagagaattgaatgaaataaaaatttcaaatcacaacctgaaacctgt 43601745  T
Q  424 ggttattataattttaatgatgctttgtgcgaagttgcaatggcaattggcaaatgctgatataaatctgggcatatgctagactgagtacaactgaaag 523  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  43601746 ggttattataattttaatgatgctttgtgcgaagttgcattggcaattggcaaatgctgctataaatctgggcatatgctagactgagtacaactgaaag 43601845  T
Q  524 ggaactgagaattatgtctccaattgatatgatatcttcaaattatgaaaattatttctgcaccaaaacac 594  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43601846 ggaactgagaattatgtctccaattgatatgatatcttcaaattatgaaaattatttctgcaccaaaacac 43601916  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 43601369 - 43601446
Alignment:
Q  10 agaagcaaaggaatataaatatgacataatggttaatgtgaatgagttaaggagtggagttataaagagacccgaggt 87  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43601369 agaaacaaaggaatataaatatgacataatggttaatgtgaatgagttaaggagtggagttataaagagacccgaggt 43601446  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 552 - 594
Target Start/End: Complemental strand, 22239135 - 22239093
Alignment:
Q  552 atgatatcttcaaattatgaaaattatttctgcaccaaaacac 594  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  22239135 atgatatcttaaaattatgaaaattatttctgcaccaaaacac 22239093  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 552 - 594
Target Start/End: Complemental strand, 37560653 - 37560611
Alignment:
Q  552 atgatatcttcaaattatgaaaattatttctgcaccaaaacac 594  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  37560653 atgatatcttaaaattatgaaaattatttctgcaccaaaacac 37560611  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 348
Target Start/End: Original strand, 29259210 - 29259294
Alignment:
Q  264 attagtcttagtagtgttgtggcagttttaagggattacttgcaatgcaagtattgtatacttttatgtttagcatttgagattg 348  Q
    ||||||||  ||||| |||||| |||||||||| |||||||| |||||||||| | ||| |||||   |||||||||||||||||    
T  29259210 attagtctcggtagttttgtggtagttttaaggaattacttgtaatgcaagtaatctattcttttggatttagcatttgagattg 29259294  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 552 - 593
Target Start/End: Complemental strand, 22436340 - 22436299
Alignment:
Q  552 atgatatcttcaaattatgaaaattatttctgcaccaaaaca 593  Q
    |||||||||| ||||||||||||| |||||||||||||||||    
T  22436340 atgatatcttaaaattatgaaaatgatttctgcaccaaaaca 22436299  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 339 - 403
Target Start/End: Original strand, 1175999 - 1176062
Alignment:
Q  339 tttgagattggccatatatatgcctcccttgtatcattagagaattgaatgaaataaaaatttca 403  Q
    |||||||||||| ||| ||| ||||||||||||||||||| ||| |||||||||| || ||||||    
T  1175999 tttgagattggctataaataagcctcccttgtatcattagcgaa-tgaatgaaatcaatatttca 1176062  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 339 - 411
Target Start/End: Original strand, 8440677 - 8440748
Alignment:
Q  339 tttgagattggccatatatatgcctcccttgtatcattagagaattgaatgaaataaaaatttcacatcacaa 411  Q
    ||||| |||||| ||| ||| ||||||||||||||||||||| || ||||||||| || ||||||||| ||||    
T  8440677 tttgaaattggctataaataagcctcccttgtatcattagag-atggaatgaaatcaatatttcacattacaa 8440748  T

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