View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21128_low_33 (Length: 254)
Name: NF21128_low_33
Description: NF21128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21128_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 13394072 - 13393838
Alignment:
| Q |
1 |
cagcacataacaaaggcactttcccattactattgtatacacattcagatttagttcccttttcttttccatttgtattcatccatgtcacctatcatat |
100 |
Q |
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| T |
13394072 |
cagcacataacaaaggcactttcccattactattgtatacacattcagatttagttcccttttcttttccatttgtattcatccatgtcacctatcatat |
13393973 |
T |
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| Q |
101 |
caaccccaccaaattacattaaacttcatgaaaatttcatgcacatccttaccctcttggtggtatgtaactactaattgttagnnnnnnnatttaacga |
200 |
Q |
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| T |
13393972 |
caaccccaccaaattacattaaacttcatgaaaatttcatgcacatccttaccctcttggtggtatgtaactactaattgttagtttttttatttaacga |
13393873 |
T |
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| Q |
201 |
attgaagcgacaatgaccggattgaaagtttatcc |
235 |
Q |
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| T |
13393872 |
attgaagcgacatggaccggattgaaagtttatcc |
13393838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 137
Target Start/End: Complemental strand, 13397173 - 13397038
Alignment:
| Q |
5 |
acataacaaaggcactttcccattactattgtatacacattcagatttagttcccttttcttttccatttgtattcat---ccatgtcacctatcatatc |
101 |
Q |
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||||| |||||| ||||| || |||| |||||| |||||||| ||||| |||||| |||||||||| | ||||||| ||||||||||||| ||||| |
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| T |
13397173 |
acatagcaaaggtactttaccgttaccattgtaagcacattcatatttatctcccttatcttttccatctttattcataatccatgtcacctattatatc |
13397074 |
T |
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| Q |
102 |
aaccccaccaaattacattaaacttcatgaaaattt |
137 |
Q |
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| T |
13397073 |
atcatcaccaaattatattaaacttcatgaaaattt |
13397038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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