View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21128_low_34 (Length: 251)
Name: NF21128_low_34
Description: NF21128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21128_low_34 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 25535336 - 25535103
Alignment:
| Q |
18 |
aaagctaatgagcttattgatgagcttaagaggtggtgtccgaattattacattggcgatgtgagtgtcacttatatacattggttttttgagcaagaaa |
117 |
Q |
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| T |
25535336 |
aaagctaatgagcttattgatgagcttaagaggtggtgtccgaattattacattggcgatgtgagtgtcacttatatacattggttttttgagcaagaaa |
25535237 |
T |
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| Q |
118 |
gagataaggaggctatggagtgttataactccttattgaaccgcaagtgtatgatgagacctaaaacttgcaatatgctcttggagattttgttcaggtt |
217 |
Q |
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| T |
25535236 |
gagataaggaggctatggagtgttataactccttattgaaccgcaagtgtatgatgagacctaaaacttgcaatatgctcttggagattttgctcaggtt |
25535137 |
T |
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| Q |
218 |
tggnnnnnnnnccgaggcttgggacttgtttcat |
251 |
Q |
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| T |
25535136 |
tggaaaaaaaaccgaggcttgggacttgtttcat |
25535103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 21 - 200
Target Start/End: Original strand, 25515112 - 25515294
Alignment:
| Q |
21 |
gctaatgagcttattgatgagcttaagaggtggtgtccgaattattacattggcgatgtgagtgtcacttatatacattggttttttgagcaagaaagag |
120 |
Q |
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| T |
25515112 |
gctaatgagcttattgatgaccttaagaggtggtgtccgaattattacaacggcgttgtgagtgccacttatatgcagtggtgctttgtacaaagaagag |
25515211 |
T |
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| Q |
121 |
ataaggaggctatggagtgttataactccttattgaaccgcaagtgt---atgatgagacctaaaacttgcaatatgctcttg |
200 |
Q |
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| T |
25515212 |
agaaggaggctatggagtgttataactccttattgaaccgcaagtgtacgatgatgagacctgaaacttgcaatattctcttg |
25515294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 251
Target Start/End: Complemental strand, 25527301 - 25527071
Alignment:
| Q |
21 |
gctaatgagcttattgatgagcttaagaggtggtgtccgaattattacattggcgatgtgagtgtcacttatatacattggttttttgagcaagaaagag |
120 |
Q |
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| T |
25527301 |
gctaatgagtttattgatgagcttaagataaggtgtccatattaccaccatggtgttgtgagtgccacttacatgaattggtttcttaagcaaggaagag |
25527202 |
T |
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| Q |
121 |
ataaggaggctatggagtgttataactccttattgaaccgcaagtgtatgatgagacctaaaacttgcaatatgctcttggagattttgttcaggtttgg |
220 |
Q |
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| T |
25527201 |
ataaggacgccatggagtgttataagtctttattgaaccgcaagtgtaggatgagacctgaaactggcgatgttctcttggaggttttgctcaagtatgg |
25527102 |
T |
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| Q |
221 |
nnnnnnnnccgaggcttgggacttgtttcat |
251 |
Q |
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| T |
25527101 |
aaagaaaactgaggcttgggacttgtttcat |
25527071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 191
Target Start/End: Complemental strand, 25538248 - 25538156
Alignment:
| Q |
99 |
tggttttttgagcaagaaagagataaggaggctatggagtgttataactccttattgaaccgcaagtgtatgatgagacctaaaacttgcaat |
191 |
Q |
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| T |
25538248 |
tggttttttaaggagggaagagaaaaggaagccatggagtcttatgactccttattgaaccacaagtttaggatgagacctgaaacttgcaat |
25538156 |
T |
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