View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21128_low_35 (Length: 250)

Name: NF21128_low_35
Description: NF21128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21128_low_35
NF21128_low_35
[»] chr4 (33 HSPs)
chr4 (11-246)||(34968012-34968249)
chr4 (214-250)||(56497607-56497643)
chr4 (214-248)||(12698623-12698657)
chr4 (214-247)||(10006366-10006399)
chr4 (214-246)||(14542763-14542795)
chr4 (214-246)||(47806259-47806291)
chr4 (214-246)||(49308846-49308878)
chr4 (213-243)||(6087772-6087802)
chr4 (213-250)||(7967624-7967661)
chr4 (213-250)||(38416082-38416119)
chr4 (213-250)||(50442747-50442783)
chr4 (213-250)||(53190320-53190357)
chr4 (213-249)||(2228396-2228432)
chr4 (214-246)||(3580740-3580772)
chr4 (214-246)||(3936653-3936685)
chr4 (214-250)||(9028071-9028107)
chr4 (214-242)||(11144672-11144700)
chr4 (214-250)||(16737097-16737133)
chr4 (214-250)||(18635556-18635592)
chr4 (214-246)||(24664994-24665026)
chr4 (214-246)||(24785465-24785497)
chr4 (214-246)||(24822769-24822801)
chr4 (214-250)||(25978343-25978379)
chr4 (214-246)||(29808271-29808303)
chr4 (214-246)||(32737738-32737770)
chr4 (214-246)||(34834009-34834041)
chr4 (214-246)||(37800857-37800889)
chr4 (214-246)||(44221473-44221505)
chr4 (214-250)||(48226497-48226533)
chr4 (214-246)||(49473671-49473703)
chr4 (214-250)||(49949360-49949395)
chr4 (214-246)||(52132305-52132337)
chr4 (214-250)||(52270029-52270065)
[»] chr3 (37 HSPs)
chr3 (214-250)||(53996325-53996361)
chr3 (213-250)||(14771356-14771393)
chr3 (214-246)||(13829080-13829112)
chr3 (214-250)||(17588388-17588424)
chr3 (214-250)||(21513314-21513350)
chr3 (214-246)||(25505704-25505736)
chr3 (214-250)||(28130933-28130969)
chr3 (214-246)||(35191820-35191852)
chr3 (213-249)||(39408264-39408300)
chr3 (214-250)||(52575973-52576009)
chr3 (214-246)||(53207996-53208028)
chr3 (214-248)||(7938750-7938784)
chr3 (214-247)||(8139741-8139774)
chr3 (214-243)||(8238590-8238619)
chr3 (213-250)||(15507270-15507307)
chr3 (214-243)||(25441506-25441535)
chr3 (213-246)||(25902805-25902838)
chr3 (213-250)||(35126268-35126305)
chr3 (214-243)||(35347301-35347330)
chr3 (213-250)||(48315023-48315060)
chr3 (213-250)||(48376860-48376897)
chr3 (213-250)||(49223026-49223062)
chr3 (214-243)||(49975811-49975840)
chr3 (213-250)||(55066599-55066636)
chr3 (214-246)||(1149072-1149104)
chr3 (214-250)||(1757668-1757704)
chr3 (214-242)||(2153508-2153536)
chr3 (214-250)||(4760133-4760169)
chr3 (214-246)||(12976605-12976637)
chr3 (214-246)||(19939044-19939076)
chr3 (214-246)||(21914074-21914106)
chr3 (214-250)||(21925717-21925753)
chr3 (214-250)||(25727966-25728002)
chr3 (214-246)||(25730428-25730460)
chr3 (214-246)||(42074129-42074161)
chr3 (214-246)||(45096052-45096084)
chr3 (214-246)||(54230102-54230134)
[»] chr2 (24 HSPs)
chr2 (214-250)||(6579280-6579316)
chr2 (213-246)||(27152378-27152411)
chr2 (214-246)||(2256997-2257029)
chr2 (214-250)||(20455917-20455953)
chr2 (214-250)||(21258642-21258678)
chr2 (214-245)||(18782544-18782575)
chr2 (213-247)||(12619369-12619403)
chr2 (213-246)||(15654872-15654905)
chr2 (213-250)||(20239368-20239405)
chr2 (214-243)||(23407024-23407053)
chr2 (214-243)||(24592852-24592881)
chr2 (214-242)||(833076-833104)
chr2 (214-242)||(4122020-4122048)
chr2 (214-246)||(12124571-12124603)
chr2 (218-246)||(12599868-12599896)
chr2 (214-242)||(16204824-16204852)
chr2 (214-250)||(19179049-19179085)
chr2 (214-246)||(24393271-24393303)
chr2 (214-246)||(24593402-24593434)
chr2 (214-246)||(25274832-25274864)
chr2 (214-246)||(35685064-35685096)
chr2 (214-246)||(35727463-35727495)
chr2 (214-246)||(41526779-41526811)
chr2 (214-250)||(41778943-41778979)
[»] chr8 (13 HSPs)
chr8 (213-250)||(7839117-7839154)
chr8 (214-246)||(30623319-30623351)
chr8 (214-246)||(38763518-38763550)
chr8 (214-249)||(19778091-19778126)
chr8 (213-250)||(13958836-13958873)
chr8 (214-243)||(39821910-39821939)
chr8 (214-246)||(1244708-1244740)
chr8 (214-250)||(1877661-1877697)
chr8 (214-250)||(4830034-4830070)
chr8 (214-250)||(19488326-19488362)
chr8 (214-250)||(27571848-27571884)
chr8 (214-246)||(36122549-36122581)
chr8 (214-250)||(45396590-45396626)
[»] chr7 (23 HSPs)
chr7 (213-250)||(1046581-1046618)
chr7 (214-246)||(6384877-6384909)
chr7 (214-246)||(7872751-7872783)
chr7 (214-246)||(26009302-26009334)
chr7 (214-250)||(37624569-37624605)
chr7 (214-245)||(37864451-37864482)
chr7 (218-249)||(45979143-45979174)
chr7 (214-248)||(2618705-2618739)
chr7 (214-248)||(6768708-6768742)
chr7 (214-243)||(5041365-5041394)
chr7 (213-246)||(22690039-22690072)
chr7 (214-243)||(37230034-37230063)
chr7 (214-246)||(2916128-2916160)
chr7 (214-246)||(9522938-9522970)
chr7 (214-250)||(14671196-14671232)
chr7 (212-248)||(16198407-16198443)
chr7 (214-246)||(21050225-21050257)
chr7 (214-250)||(22777359-22777394)
chr7 (214-246)||(31292772-31292804)
chr7 (214-250)||(41029298-41029334)
chr7 (214-250)||(45425479-45425515)
chr7 (214-246)||(46987112-46987144)
chr7 (214-250)||(48527216-48527252)
[»] chr5 (22 HSPs)
chr5 (213-250)||(7215775-7215812)
chr5 (213-250)||(11017201-11017238)
chr5 (214-246)||(25607061-25607093)
chr5 (214-250)||(26590733-26590769)
chr5 (214-246)||(31708149-31708181)
chr5 (214-250)||(32339761-32339797)
chr5 (214-250)||(42708001-42708037)
chr5 (214-249)||(11647223-11647258)
chr5 (215-246)||(17465398-17465429)
chr5 (214-249)||(32675293-32675328)
chr5 (214-248)||(42005131-42005165)
chr5 (214-243)||(6489033-6489062)
chr5 (213-249)||(5974225-5974261)
chr5 (214-246)||(6624802-6624834)
chr5 (214-246)||(12611038-12611070)
chr5 (214-250)||(13580741-13580777)
chr5 (215-243)||(24408522-24408550)
chr5 (214-250)||(36683469-36683505)
chr5 (214-246)||(37614343-37614375)
chr5 (214-246)||(37791080-37791112)
chr5 (214-246)||(37932356-37932388)
chr5 (214-246)||(42168948-42168980)
[»] scaffold0066 (1 HSPs)
scaffold0066 (214-250)||(17530-17566)
[»] scaffold0026 (1 HSPs)
scaffold0026 (214-250)||(75351-75387)
[»] chr6 (13 HSPs)
chr6 (214-246)||(12808895-12808927)
chr6 (213-248)||(30639427-30639462)
chr6 (214-248)||(4450288-4450322)
chr6 (213-243)||(9977082-9977112)
chr6 (215-249)||(10496971-10497005)
chr6 (214-243)||(334166-334195)
chr6 (214-243)||(15155761-15155790)
chr6 (214-243)||(20744164-20744193)
chr6 (214-246)||(655752-655784)
chr6 (214-246)||(2726420-2726452)
chr6 (214-246)||(9111073-9111105)
chr6 (214-250)||(14679151-14679187)
chr6 (214-246)||(28592690-28592722)
[»] chr1 (30 HSPs)
chr1 (214-246)||(10132447-10132479)
chr1 (214-250)||(16580798-16580834)
chr1 (213-249)||(34485902-34485938)
chr1 (214-250)||(38448865-38448901)
chr1 (214-250)||(39949838-39949874)
chr1 (216-246)||(5033571-5033601)
chr1 (216-246)||(5280659-5280689)
chr1 (214-248)||(6809800-6809834)
chr1 (215-249)||(7610169-7610203)
chr1 (214-248)||(40613049-40613083)
chr1 (214-243)||(3481587-3481616)
chr1 (214-243)||(10356720-10356749)
chr1 (214-243)||(11681249-11681278)
chr1 (214-243)||(16033456-16033485)
chr1 (213-246)||(42416828-42416861)
chr1 (214-250)||(14880854-14880890)
chr1 (214-246)||(21400026-21400058)
chr1 (214-250)||(23405357-23405393)
chr1 (214-250)||(28832170-28832206)
chr1 (214-246)||(29233977-29234009)
chr1 (214-246)||(29251780-29251812)
chr1 (214-246)||(29798119-29798151)
chr1 (214-246)||(29987115-29987147)
chr1 (214-246)||(30937501-30937533)
chr1 (214-246)||(32944762-32944794)
chr1 (214-246)||(38862128-38862160)
chr1 (214-246)||(41973281-41973313)
chr1 (222-250)||(45383121-45383149)
chr1 (214-246)||(45481519-45481551)
chr1 (214-250)||(50638915-50638951)
[»] scaffold0044 (1 HSPs)
scaffold0044 (214-243)||(42340-42369)
[»] scaffold0016 (1 HSPs)
scaffold0016 (214-243)||(99063-99092)
[»] scaffold0008 (1 HSPs)
scaffold0008 (214-243)||(122917-122946)
[»] scaffold0154 (1 HSPs)
scaffold0154 (214-250)||(37561-37597)


Alignment Details
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 34968249 - 34968012
Alignment:
Q  11 ttatactataatttctatataatgacatttattgatcaattttattctttaactt--acatgttaaggtatctctttatttagtagaaaaaagcatctca 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  34968249 ttatactataatttctatataatgacatttattgatcaattttattctttaacttttacatgttaaggtatctctttatttagtagaaaaaagcatctca 34968150  T
Q  109 ttttttatatnnnnnnnnnnnnnnnnnnnngtatctctcatcattttctcttgaaaccttccttctctcttacctaatttattatttattctccactaaa 208  Q
    ||||||||||                    ||||||||||||||||||||||||||| |||||||||||||| ||| ||||| |||||||||||||||||    
T  34968149 ttttttatataaaaaaattaatgaaaaatggtatctctcatcattttctcttgaaactttccttctctcttaactattttatcatttattctccactaaa 34968050  T
Q  209 cgattaatgcataatatatgcaaggtctggggttcgaa 246  Q
     ||||||||||||||||||| ||||| || ||||||||    
T  34968049 tgattaatgcataatatatgtaaggtttgaggttcgaa 34968012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 56497643 - 56497607
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||||||||||||||||||||||||||    
T  56497643 aatgcataatatatgcaaggtctggggttcgaatccc 56497607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 214 - 248
Target Start/End: Original strand, 12698623 - 12698657
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatc 248  Q
    |||||||||||||||||||||||||||||||||||    
T  12698623 aatgcataatatatgcaaggtctggggttcgaatc 12698657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 214 - 247
Target Start/End: Original strand, 10006366 - 10006399
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaat 247  Q
    ||||||||||||||||||||||||||||||||||    
T  10006366 aatgcataatatatgcaaggtctggggttcgaat 10006399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 14542795 - 14542763
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||||||||||||||    
T  14542795 aatgcataatatatgcaaggtctggggttcgaa 14542763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 47806291 - 47806259
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||||||||||||||    
T  47806291 aatgcataatatatgcaaggtctggggttcgaa 47806259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 49308846 - 49308878
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||||||||||||||    
T  49308846 aatgcataatatatgcaaggtctggggttcgaa 49308878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 243
Target Start/End: Original strand, 6087772 - 6087802
Alignment:
Q  213 taatgcataatatatgcaaggtctggggttc 243  Q
    |||||||||||||||||||||||||||||||    
T  6087772 taatgcataatatatgcaaggtctggggttc 6087802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 7967661 - 7967624
Alignment:
Q  213 taatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  7967661 taatgcataatatatgcaaagtctgggattcgaatccc 7967624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 38416082 - 38416119
Alignment:
Q  213 taatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||||||||||| || ||||||||||||    
T  38416082 taatgcataatatatgcaaggtatgaggttcgaatccc 38416119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 50442783 - 50442747
Alignment:
Q  213 taatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||||||||||||| |||||||||||||    
T  50442783 taatgcataatatatgcaaggtct-gggttcgaatccc 50442747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 53190320 - 53190357
Alignment:
Q  213 taatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||||||||||||  |||||||||||||    
T  53190320 taatgcataatatatgcaaggtccagggttcgaatccc 53190357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 2228432 - 2228396
Alignment:
Q  213 taatgcataatatatgcaaggtctggggttcgaatcc 249  Q
    |||||||||||||||| |||||||||| |||||||||    
T  2228432 taatgcataatatatgtaaggtctgggattcgaatcc 2228396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 3580740 - 3580772
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||||||| ||||||    
T  3580740 aatgcataatatatgcaaggtctgggattcgaa 3580772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 3936653 - 3936685
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||| ||||||||||    
T  3936653 aatgcataatatatgcaaggtccggggttcgaa 3936685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 9028107 - 9028071
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  9028107 aatgcataaaatatgtaaggtctggggttcgaatccc 9028071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 242
Target Start/End: Complemental strand, 11144700 - 11144672
Alignment:
Q  214 aatgcataatatatgcaaggtctggggtt 242  Q
    |||||||||||||||||||||||||||||    
T  11144700 aatgcataatatatgcaaggtctggggtt 11144672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 16737097 - 16737133
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  16737097 aatgcataatatatgcaaggtcgggggttcaaatccc 16737133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 18635556 - 18635592
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||| |||||||||||||| |||||||    
T  18635556 aatgcataatatatacaaggtctggggtttgaatccc 18635592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 24665026 - 24664994
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||| ||||||||||    
T  24665026 aatgcataatatatgcaaggtccggggttcgaa 24664994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 24785497 - 24785465
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||| ||||||||||||||||||    
T  24785497 aatgcataatatatacaaggtctggggttcgaa 24785465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 24822769 - 24822801
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||| ||||||||||||||||||    
T  24822769 aatgcataatatatacaaggtctggggttcgaa 24822801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 25978343 - 25978379
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||||||||||| | ||||||||||||    
T  25978343 aatgcataatatatgcaaggtccgaggttcgaatccc 25978379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 29808303 - 29808271
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    ||||||||||||||||||||| |||||||||||    
T  29808303 aatgcataatatatgcaaggtatggggttcgaa 29808271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 32737770 - 32737738
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||| ||||||||||||||||||||||||||||    
T  32737770 aatgtataatatatgcaaggtctggggttcgaa 32737738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 34834041 - 34834009
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||| ||||||||||    
T  34834041 aatgcataatatatgcaaggtccggggttcgaa 34834009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 37800857 - 37800889
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||| ||||||||||||||||    
T  37800857 aatgcataatatatgcgaggtctggggttcgaa 37800889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 44221473 - 44221505
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||||| ||||||||    
T  44221473 aatgcataatatatgcaaggtctgaggttcgaa 44221505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 48226533 - 48226497
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  48226533 aatgcataaaatatgcaaggtctggggttcaaatccc 48226497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 49473671 - 49473703
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||| ||||||||||    
T  49473671 aatgcataatatatgcaaggtccggggttcgaa 49473703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 49949360 - 49949395
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    ||||||||||||||||||||||| |||||||||||||    
T  49949360 aatgcataatatatgcaaggtct-gggttcgaatccc 49949395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 52132337 - 52132305
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||||| ||||||||    
T  52132337 aatgcataatatatgcaaggtctgtggttcgaa 52132305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 52270065 - 52270029
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    ||||||||||||||||||||||||||  |||||||||    
T  52270065 aatgcataatatatgcaaggtctgggcctcgaatccc 52270029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 53996325 - 53996361
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||||||||||||||||||||||||||    
T  53996325 aatgcataatatatgcaaggtctggggttcgaatccc 53996361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 14771356 - 14771393
Alignment:
Q  213 taatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  14771356 taatgcataatatatgcaaggtctgaggttcgaatccc 14771393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 13829112 - 13829080
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||||||||||||||    
T  13829112 aatgcataatatatgcaaggtctggggttcgaa 13829080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 17588388 - 17588424
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    ||||||||||||||||||| |||||||||||||||||    
T  17588388 aatgcataatatatgcaagatctggggttcgaatccc 17588424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 21513314 - 21513350
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||| ||||||||||||||||||||||||||    
T  21513314 aatgcataatttatgcaaggtctggggttcgaatccc 21513350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 25505736 - 25505704
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||||||||||||||    
T  25505736 aatgcataatatatgcaaggtctggggttcgaa 25505704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 28130969 - 28130933
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    ||||||||||||||||||||||||||||| |||||||    
T  28130969 aatgcataatatatgcaaggtctggggtttgaatccc 28130933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 35191852 - 35191820
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||||||||||||||    
T  35191852 aatgcataatatatgcaaggtctggggttcgaa 35191820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 39408300 - 39408264
Alignment:
Q  213 taatgcataatatatgcaaggtctggggttcgaatcc 249  Q
    ||||| |||||||||||||||||||||||||||||||    
T  39408300 taatgtataatatatgcaaggtctggggttcgaatcc 39408264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 52575973 - 52576009
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    ||||||||| |||||||||||||||||||||||||||    
T  52575973 aatgcataaaatatgcaaggtctggggttcgaatccc 52576009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 53207996 - 53208028
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||||||||||||||    
T  53207996 aatgcataatatatgcaaggtctggggttcgaa 53208028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Original strand, 7938750 - 7938784
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatc 248  Q
    |||||||||||||| ||||||||||||||||||||    
T  7938750 aatgcataatatatacaaggtctggggttcgaatc 7938784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 247
Target Start/End: Original strand, 8139741 - 8139774
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaat 247  Q
    |||||||||||||||||||||||| |||||||||    
T  8139741 aatgcataatatatgcaaggtctgaggttcgaat 8139774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 243
Target Start/End: Original strand, 8238590 - 8238619
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttc 243  Q
    ||||||||||||||||||||||||||||||    
T  8238590 aatgcataatatatgcaaggtctggggttc 8238619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 15507307 - 15507270
Alignment:
Q  213 taatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  15507307 taatgcataatatatgtaaggtctgaggttcgaatccc 15507270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 243
Target Start/End: Complemental strand, 25441535 - 25441506
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttc 243  Q
    ||||||||||||||||||||||||||||||    
T  25441535 aatgcataatatatgcaaggtctggggttc 25441506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 213 - 246
Target Start/End: Original strand, 25902805 - 25902838
Alignment:
Q  213 taatgcataatatatgcaaggtctggggttcgaa 246  Q
    ||||| ||||||||||||||||||||||||||||    
T  25902805 taatgtataatatatgcaaggtctggggttcgaa 25902838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 35126305 - 35126268
Alignment:
Q  213 taatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  35126305 taatgcataatatatgcaagatctggggttcaaatccc 35126268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 243
Target Start/End: Complemental strand, 35347330 - 35347301
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttc 243  Q
    ||||||||||||||||||||||||||||||    
T  35347330 aatgcataatatatgcaaggtctggggttc 35347301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 48315060 - 48315023
Alignment:
Q  213 taatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  48315060 taatgcataatatatgcaaggtccggggttcaaatccc 48315023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 48376860 - 48376897
Alignment:
Q  213 taatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  48376860 taatgcataatatatgtaaggtttggggttcgaatccc 48376897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 49223062 - 49223026
Alignment:
Q  213 taatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||||||||||| |||||||||||||||    
T  49223062 taatgcataatatatgcaaggt-tggggttcgaatccc 49223026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 243
Target Start/End: Complemental strand, 49975840 - 49975811
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttc 243  Q
    ||||||||||||||||||||||||||||||    
T  49975840 aatgcataatatatgcaaggtctggggttc 49975811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 55066636 - 55066599
Alignment:
Q  213 taatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  55066636 taatgcataatatatgcatggtctggggttcaaatccc 55066599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 1149104 - 1149072
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    ||||||||||||||||||||||| |||||||||    
T  1149104 aatgcataatatatgcaaggtctagggttcgaa 1149072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 1757704 - 1757668
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  1757704 aatgcataatatatgcaacgtctgggattcgaatccc 1757668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 242
Target Start/End: Complemental strand, 2153536 - 2153508
Alignment:
Q  214 aatgcataatatatgcaaggtctggggtt 242  Q
    |||||||||||||||||||||||||||||    
T  2153536 aatgcataatatatgcaaggtctggggtt 2153508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 4760133 - 4760169
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||||||||||||| | ||||||||||    
T  4760133 aatgcataatatatgcaaggtctgagattcgaatccc 4760169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 12976637 - 12976605
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||||||| ||||||    
T  12976637 aatgcataatatatgcaaggtctgggattcgaa 12976605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 19939076 - 19939044
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    ||||||||||||||| |||||||||||||||||    
T  19939076 aatgcataatatatgaaaggtctggggttcgaa 19939044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 21914106 - 21914074
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    ||||||||||||||||||||| |||||||||||    
T  21914106 aatgcataatatatgcaaggtatggggttcgaa 21914074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 21925717 - 21925753
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    ||||||||||||| ||||||| |||||||||||||||    
T  21925717 aatgcataatataggcaaggtttggggttcgaatccc 21925753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 25728002 - 25727966
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  25728002 aatgcataatatatgcaaggtccggggttcaaatccc 25727966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 25730428 - 25730460
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||| ||||||||||||||||||    
T  25730428 aatgcataatatatacaaggtctggggttcgaa 25730460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 42074129 - 42074161
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||||| ||||||||    
T  42074129 aatgcataatatatgcaaggtctgaggttcgaa 42074161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 45096052 - 45096084
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||||| ||||||||    
T  45096052 aatgcataatatatgcaaggtctgtggttcgaa 45096084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 54230134 - 54230102
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    ||||||||||||||||||||| |||||||||||    
T  54230134 aatgcataatatatgcaaggtttggggttcgaa 54230102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 6579316 - 6579280
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||||||||||||||||||||||||||    
T  6579316 aatgcataatatatgcaaggtctggggttcgaatccc 6579280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 213 - 246
Target Start/End: Original strand, 27152378 - 27152411
Alignment:
Q  213 taatgcataatatatgcaaggtctggggttcgaa 246  Q
    ||||||||||||||||||||||||||||||||||    
T  27152378 taatgcataatatatgcaaggtctggggttcgaa 27152411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 2256997 - 2257029
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||||||||||||||    
T  2256997 aatgcataatatatgcaaggtctggggttcgaa 2257029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 20455917 - 20455953
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||||||||||| ||||||||||||||    
T  20455917 aatgcataatatatgcaaggtccggggttcgaatccc 20455953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 21258642 - 21258678
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    ||||||| |||||||||||||||||||||||||||||    
T  21258642 aatgcatgatatatgcaaggtctggggttcgaatccc 21258678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 245
Target Start/End: Complemental strand, 18782575 - 18782544
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcga 245  Q
    ||||||||||||||||||||||||||||||||    
T  18782575 aatgcataatatatgcaaggtctggggttcga 18782544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 247
Target Start/End: Original strand, 12619369 - 12619403
Alignment:
Q  213 taatgcataatatatgcaaggtctggggttcgaat 247  Q
    |||||||||||||||||||| ||||||||||||||    
T  12619369 taatgcataatatatgcaagatctggggttcgaat 12619403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 213 - 246
Target Start/End: Complemental strand, 15654905 - 15654872
Alignment:
Q  213 taatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||| |||||||||||||||||||||||    
T  15654905 taatgcataaaatatgcaaggtctggggttcgaa 15654872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 20239368 - 20239405
Alignment:
Q  213 taatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  20239368 taatgcataatatatgcaaggtctaaggttcgaatccc 20239405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 243
Target Start/End: Complemental strand, 23407053 - 23407024
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttc 243  Q
    ||||||||||||||||||||||||||||||    
T  23407053 aatgcataatatatgcaaggtctggggttc 23407024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 243
Target Start/End: Complemental strand, 24592881 - 24592852
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttc 243  Q
    ||||||||||||||||||||||||||||||    
T  24592881 aatgcataatatatgcaaggtctggggttc 24592852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 242
Target Start/End: Complemental strand, 833104 - 833076
Alignment:
Q  214 aatgcataatatatgcaaggtctggggtt 242  Q
    |||||||||||||||||||||||||||||    
T  833104 aatgcataatatatgcaaggtctggggtt 833076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 242
Target Start/End: Complemental strand, 4122048 - 4122020
Alignment:
Q  214 aatgcataatatatgcaaggtctggggtt 242  Q
    |||||||||||||||||||||||||||||    
T  4122048 aatgcataatatatgcaaggtctggggtt 4122020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 12124571 - 12124603
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||| ||||||||||    
T  12124571 aatgcataatatatgcaaggtccggggttcgaa 12124603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 246
Target Start/End: Complemental strand, 12599896 - 12599868
Alignment:
Q  218 cataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||||||||||    
T  12599896 cataatatatgcaaggtctggggttcgaa 12599868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 242
Target Start/End: Complemental strand, 16204852 - 16204824
Alignment:
Q  214 aatgcataatatatgcaaggtctggggtt 242  Q
    |||||||||||||||||||||||||||||    
T  16204852 aatgcataatatatgcaaggtctggggtt 16204824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 19179085 - 19179049
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||||||||||||| | ||||||||||    
T  19179085 aatgcataatatatgcaaggtctgcgcttcgaatccc 19179049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 24393271 - 24393303
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||||| ||||||||    
T  24393271 aatgcataatatatgcaaggtctgaggttcgaa 24393303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 24593402 - 24593434
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||| ||||||||||    
T  24593402 aatgcataatatatgcaaggtccggggttcgaa 24593434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 25274864 - 25274832
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    ||||||||||||||| |||||||||||||||||    
T  25274864 aatgcataatatatgtaaggtctggggttcgaa 25274832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 35685096 - 35685064
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    ||||||||||||||||||||||| |||||||||    
T  35685096 aatgcataatatatgcaaggtctagggttcgaa 35685064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 35727463 - 35727495
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    ||||||||||||||||||||| |||||||||||    
T  35727463 aatgcataatatatgcaaggtttggggttcgaa 35727495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 41526811 - 41526779
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||| ||||||||||||||||||||||||    
T  41526811 aatgcatagtatatgcaaggtctggggttcgaa 41526779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 41778979 - 41778943
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||||||||||| | ||||||||||||    
T  41778979 aatgcataatatatgcaaggtccgaggttcgaatccc 41778943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 7839154 - 7839117
Alignment:
Q  213 taatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||||||||||| |||||||||||||||    
T  7839154 taatgcataatatatgcaaggtatggggttcgaatccc 7839117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 30623319 - 30623351
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||||||||||||||    
T  30623319 aatgcataatatatgcaaggtctggggttcgaa 30623351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 38763550 - 38763518
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||||||||||||||    
T  38763550 aatgcataatatatgcaaggtctggggttcgaa 38763518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 249
Target Start/End: Original strand, 19778091 - 19778126
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatcc 249  Q
    |||||||||||||||||||||| |||||||||||||    
T  19778091 aatgcataatatatgcaaggtccggggttcgaatcc 19778126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 13958836 - 13958873
Alignment:
Q  213 taatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  13958836 taatgcataatatatgtaaggtttggggttcgaatccc 13958873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 243
Target Start/End: Original strand, 39821910 - 39821939
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttc 243  Q
    ||||||||||||||||||||||||||||||    
T  39821910 aatgcataatatatgcaaggtctggggttc 39821939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 1244740 - 1244708
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||| ||||||||||||||||||    
T  1244740 aatgcataatatatacaaggtctggggttcgaa 1244708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 1877697 - 1877661
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    ||||||||||||||||||||||  |||||||||||||    
T  1877697 aatgcataatatatgcaaggtcacgggttcgaatccc 1877661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 4830034 - 4830070
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||||||||||  ||||||||||||||    
T  4830034 aatgcataatatatgcaaggttcggggttcgaatccc 4830070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 19488326 - 19488362
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||| |||||||||||| |||||||||    
T  19488326 aatgcataatatatacaaggtctggggctcgaatccc 19488362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 27571884 - 27571848
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  27571884 aatgcataatatatgcaaggtttggggttcaaatccc 27571848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 36122549 - 36122581
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    ||||||||||||||||||||||| |||||||||    
T  36122549 aatgcataatatatgcaaggtctagggttcgaa 36122581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 45396590 - 45396626
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    ||||||||||||||||||||||||  |||||||||||    
T  45396590 aatgcataatatatgcaaggtctgaagttcgaatccc 45396626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 1046581 - 1046618
Alignment:
Q  213 taatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||||| |||||||||||||||||||||    
T  1046581 taatgcataatatatgtaaggtctggggttcgaatccc 1046618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 6384877 - 6384909
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||||||||||||||    
T  6384877 aatgcataatatatgcaaggtctggggttcgaa 6384909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 7872783 - 7872751
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||||||||||||||    
T  7872783 aatgcataatatatgcaaggtctggggttcgaa 7872751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 26009302 - 26009334
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||||||||||||||    
T  26009302 aatgcataatatatgcaaggtctggggttcgaa 26009334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 37624569 - 37624605
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||||||||||| ||||||||||||||    
T  37624569 aatgcataatatatgcaaggtcgggggttcgaatccc 37624605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 245
Target Start/End: Original strand, 37864451 - 37864482
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcga 245  Q
    ||||||||||||||||||||||||||||||||    
T  37864451 aatgcataatatatgcaaggtctggggttcga 37864482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 218 - 249
Target Start/End: Original strand, 45979143 - 45979174
Alignment:
Q  218 cataatatatgcaaggtctggggttcgaatcc 249  Q
    ||||||||||||||||||||||||||||||||    
T  45979143 cataatatatgcaaggtctggggttcgaatcc 45979174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Original strand, 2618705 - 2618739
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatc 248  Q
    |||||||||||||||||||||| ||||||||||||    
T  2618705 aatgcataatatatgcaaggtccggggttcgaatc 2618739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 6768742 - 6768708
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatc 248  Q
    |||||||||||||||||||||||| ||||||||||    
T  6768742 aatgcataatatatgcaaggtctgaggttcgaatc 6768708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 243
Target Start/End: Original strand, 5041365 - 5041394
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttc 243  Q
    ||||||||||||||||||||||||||||||    
T  5041365 aatgcataatatatgcaaggtctggggttc 5041394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 213 - 246
Target Start/End: Complemental strand, 22690072 - 22690039
Alignment:
Q  213 taatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||| |||||||||||    
T  22690072 taatgcataatatatgcaaggtttggggttcgaa 22690039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 243
Target Start/End: Complemental strand, 37230063 - 37230034
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttc 243  Q
    ||||||||||||||||||||||||||||||    
T  37230063 aatgcataatatatgcaaggtctggggttc 37230034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 2916128 - 2916160
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||||||| ||||||    
T  2916128 aatgcataatatatgcaaggtctgggattcgaa 2916160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 9522938 - 9522970
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    ||||||||||||||||||||| |||||||||||    
T  9522938 aatgcataatatatgcaaggtttggggttcgaa 9522970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 14671196 - 14671232
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  14671196 aatgcataatatatacaaggtccggggttcgaatccc 14671232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 16198407 - 16198443
Alignment:
Q  212 ttaatgcataatatatgcaaggtctggggttcgaatc 248  Q
    |||||||||||||||||||||||| || |||||||||    
T  16198407 ttaatgcataatatatgcaaggtccggagttcgaatc 16198443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 21050257 - 21050225
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||||||| ||||||    
T  21050257 aatgcataatatatgcaaggtctgggtttcgaa 21050225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 22777394 - 22777359
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||||||||||| ||||||||||||||    
T  22777394 aatgcataatatatgcaaggtc-ggggttcgaatccc 22777359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 31292804 - 31292772
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    ||||||||||| |||||||||||||||||||||    
T  31292804 aatgcataatacatgcaaggtctggggttcgaa 31292772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 41029298 - 41029334
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  41029298 aatgtataatatatgcaaggtccggggttcgaatccc 41029334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 45425479 - 45425515
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||||||||||  ||||||||||||||    
T  45425479 aatgcataatatatgcaaggttcggggttcgaatccc 45425515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 46987112 - 46987144
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||| ||||||||||    
T  46987112 aatgcataatatatgcaaggtccggggttcgaa 46987144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 48527216 - 48527252
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||||||||||| || |||||||||||    
T  48527216 aatgcataatatatgcaaggtccggagttcgaatccc 48527252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 7215775 - 7215812
Alignment:
Q  213 taatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||||| |||||||||||||||||||||    
T  7215775 taatgcataatatatgtaaggtctggggttcgaatccc 7215812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 213 - 250
Target Start/End: Original strand, 11017201 - 11017238
Alignment:
Q  213 taatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  11017201 taatgcataatatatgcaaggtctgaggttcgaatccc 11017238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 25607093 - 25607061
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||||||||||||||    
T  25607093 aatgcataatatatgcaaggtctggggttcgaa 25607061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 26590733 - 26590769
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    ||||||||||||||||||||||||||||| |||||||    
T  26590733 aatgcataatatatgcaaggtctggggtttgaatccc 26590769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 31708181 - 31708149
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||||||||||||||    
T  31708181 aatgcataatatatgcaaggtctggggttcgaa 31708149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 32339761 - 32339797
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||||||||||| ||||||||||||||    
T  32339761 aatgcataatatatgcaaggtccggggttcgaatccc 32339797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 42708001 - 42708037
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||||||||||||||| ||||||||||    
T  42708001 aatgcataatatatgcaaggtctgggattcgaatccc 42708037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 249
Target Start/End: Original strand, 11647223 - 11647258
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatcc 249  Q
    ||||||||||||||||||||| ||||||||||||||    
T  11647223 aatgcataatatatgcaaggtttggggttcgaatcc 11647258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 215 - 246
Target Start/End: Complemental strand, 17465429 - 17465398
Alignment:
Q  215 atgcataatatatgcaaggtctggggttcgaa 246  Q
    ||||||||||||||||||||||||||||||||    
T  17465429 atgcataatatatgcaaggtctggggttcgaa 17465398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 249
Target Start/End: Complemental strand, 32675328 - 32675293
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatcc 249  Q
    ||||||||||||||||||||||| ||||||||||||    
T  32675328 aatgcataatatatgcaaggtctagggttcgaatcc 32675293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Original strand, 42005131 - 42005165
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatc 248  Q
    ||||||||||||||||||||||||||||| |||||    
T  42005131 aatgcataatatatgcaaggtctggggtttgaatc 42005165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 243
Target Start/End: Original strand, 6489033 - 6489062
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttc 243  Q
    ||||||||||||||||||||||||||||||    
T  6489033 aatgcataatatatgcaaggtctggggttc 6489062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 5974261 - 5974225
Alignment:
Q  213 taatgcataatatatgcaaggtctggggttcgaatcc 249  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  5974261 taatgcataatatatgcaaggtctgaggttcaaatcc 5974225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 6624802 - 6624834
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||| ||||||||||    
T  6624802 aatgcataatatatgcaaggtccggggttcgaa 6624834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 12611070 - 12611038
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    ||||||||| |||||||||||||||||||||||    
T  12611070 aatgcataaaatatgcaaggtctggggttcgaa 12611038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 13580777 - 13580741
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  13580777 aatgcctaatatatacaaggtctggggttcgaatccc 13580741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 215 - 243
Target Start/End: Original strand, 24408522 - 24408550
Alignment:
Q  215 atgcataatatatgcaaggtctggggttc 243  Q
    |||||||||||||||||||||||||||||    
T  24408522 atgcataatatatgcaaggtctggggttc 24408550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 36683505 - 36683469
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    ||||||||||||||||||| | |||||||||||||||    
T  36683505 aatgcataatatatgcaagatatggggttcgaatccc 36683469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 37614375 - 37614343
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||||||| ||||||    
T  37614375 aatgcataatatatgcaaggtctgggattcgaa 37614343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 37791112 - 37791080
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||||||| ||||||    
T  37791112 aatgcataatatatgcaaggtctgggattcgaa 37791080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 37932356 - 37932388
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||| ||||||||||    
T  37932356 aatgcataatatatgcaaggtccggggttcgaa 37932388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 42168980 - 42168948
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||| ||||||||||||||||||||||||    
T  42168980 aatgcatagtatatgcaaggtctggggttcgaa 42168948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 17530 - 17566
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    ||||||||||||||||||||| |||||||||||||||    
T  17530 aatgcataatatatgcaaggtttggggttcgaatccc 17566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 75351 - 75387
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||||||||||| ||||||||||||||    
T  75351 aatgcataatatatgcaaggtccggggttcgaatccc 75387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 12808895 - 12808927
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||||||||||||||    
T  12808895 aatgcataatatatgcaaggtctggggttcgaa 12808927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 213 - 248
Target Start/End: Complemental strand, 30639462 - 30639427
Alignment:
Q  213 taatgcataatatatgcaaggtctggggttcgaatc 248  Q
    ||||||||||||||||||||||||| ||||||||||    
T  30639462 taatgcataatatatgcaaggtctgaggttcgaatc 30639427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Original strand, 4450288 - 4450322
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatc 248  Q
    |||||||||||||||||||||| ||||||||||||    
T  4450288 aatgcataatatatgcaaggtccggggttcgaatc 4450322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 243
Target Start/End: Original strand, 9977082 - 9977112
Alignment:
Q  213 taatgcataatatatgcaaggtctggggttc 243  Q
    |||||||||||||||||||||||||||||||    
T  9977082 taatgcataatatatgcaaggtctggggttc 9977112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 249
Target Start/End: Complemental strand, 10497005 - 10496971
Alignment:
Q  215 atgcataatatatgcaaggtctggggttcgaatcc 249  Q
    ||||||||||||||||||||||||||||| |||||    
T  10497005 atgcataatatatgcaaggtctggggttcaaatcc 10496971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 243
Target Start/End: Original strand, 334166 - 334195
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttc 243  Q
    ||||||||||||||||||||||||||||||    
T  334166 aatgcataatatatgcaaggtctggggttc 334195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 243
Target Start/End: Original strand, 15155761 - 15155790
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttc 243  Q
    ||||||||||||||||||||||||||||||    
T  15155761 aatgcataatatatgcaaggtctggggttc 15155790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 243
Target Start/End: Original strand, 20744164 - 20744193
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttc 243  Q
    ||||||||||||||||||||||||||||||    
T  20744164 aatgcataatatatgcaaggtctggggttc 20744193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 655784 - 655752
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||| ||||||||||    
T  655784 aatgcataatatatgcaaggtccggggttcgaa 655752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 2726452 - 2726420
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||| ||||||||||    
T  2726452 aatgcataatatatgcaaggtccggggttcgaa 2726420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 9111073 - 9111105
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||| ||||||||||    
T  9111073 aatgcataatatatgcaaggtccggggttcgaa 9111105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 14679151 - 14679187
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  14679151 aatgcataatatatgcaaggtttgggtttcgaatccc 14679187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 28592722 - 28592690
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    ||||||||||||||| |||||||||||||||||    
T  28592722 aatgcataatatatgtaaggtctggggttcgaa 28592690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 10132479 - 10132447
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||||||||||||||    
T  10132479 aatgcataatatatgcaaggtctggggttcgaa 10132447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 16580834 - 16580798
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||| ||||||||||||||||||||||||||||||||    
T  16580834 aatgtataatatatgcaaggtctggggttcgaatccc 16580798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 213 - 249
Target Start/End: Original strand, 34485902 - 34485938
Alignment:
Q  213 taatgcataatatatgcaaggtctggggttcgaatcc 249  Q
    |||||||||||||||| ||||||||||||||||||||    
T  34485902 taatgcataatatatgtaaggtctggggttcgaatcc 34485938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 38448901 - 38448865
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||||||||||| ||||||||||||||    
T  38448901 aatgcataatatatgcaaggtccggggttcgaatccc 38448865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 39949838 - 39949874
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||| ||||||||||||||||||||||    
T  39949838 aatgcataatatatacaaggtctggggttcgaatccc 39949874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 246
Target Start/End: Original strand, 5033571 - 5033601
Alignment:
Q  216 tgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||||||||||||    
T  5033571 tgcataatatatgcaaggtctggggttcgaa 5033601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 246
Target Start/End: Original strand, 5280659 - 5280689
Alignment:
Q  216 tgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||||||||||||    
T  5280659 tgcataatatatgcaaggtctggggttcgaa 5280689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Complemental strand, 6809834 - 6809800
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatc 248  Q
    |||||||||||||||||| ||||||||||||||||    
T  6809834 aatgcataatatatgcaatgtctggggttcgaatc 6809800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 249
Target Start/End: Complemental strand, 7610203 - 7610169
Alignment:
Q  215 atgcataatatatgcaaggtctggggttcgaatcc 249  Q
    ||||||||||||||||||||||||||||| |||||    
T  7610203 atgcataatatatgcaaggtctggggttcaaatcc 7610169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 248
Target Start/End: Original strand, 40613049 - 40613083
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatc 248  Q
    |||||||||||||||||||||| ||||||||||||    
T  40613049 aatgcataatatatgcaaggtccggggttcgaatc 40613083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 243
Target Start/End: Original strand, 3481587 - 3481616
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttc 243  Q
    ||||||||||||||||||||||||||||||    
T  3481587 aatgcataatatatgcaaggtctggggttc 3481616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 243
Target Start/End: Complemental strand, 10356749 - 10356720
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttc 243  Q
    ||||||||||||||||||||||||||||||    
T  10356749 aatgcataatatatgcaaggtctggggttc 10356720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 243
Target Start/End: Original strand, 11681249 - 11681278
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttc 243  Q
    ||||||||||||||||||||||||||||||    
T  11681249 aatgcataatatatgcaaggtctggggttc 11681278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 243
Target Start/End: Complemental strand, 16033485 - 16033456
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttc 243  Q
    ||||||||||||||||||||||||||||||    
T  16033485 aatgcataatatatgcaaggtctggggttc 16033456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 213 - 246
Target Start/End: Original strand, 42416828 - 42416861
Alignment:
Q  213 taatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||| |||||||||||    
T  42416828 taatgcataatatatgcaaggtttggggttcgaa 42416861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 14880854 - 14880890
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  14880854 aatgcataatatatgcaaggtctgaggttcaaatccc 14880890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 21400058 - 21400026
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    ||||||||||||||||||||||| |||||||||    
T  21400058 aatgcataatatatgcaaggtcttgggttcgaa 21400026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 23405393 - 23405357
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    ||||||||||||||||||||||  |||||||||||||    
T  23405393 aatgcataatatatgcaaggtccagggttcgaatccc 23405357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 28832206 - 28832170
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  28832206 aatgcataatatatgcaaggtctgaggttcaaatccc 28832170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 29234009 - 29233977
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    ||||||||| |||||||||||||||||||||||    
T  29234009 aatgcataaaatatgcaaggtctggggttcgaa 29233977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 29251780 - 29251812
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||||| ||||||||    
T  29251780 aatgcataatatatgcaaggtctgaggttcgaa 29251812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 29798151 - 29798119
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    ||||||||||||||| |||||||||||||||||    
T  29798151 aatgcataatatatgtaaggtctggggttcgaa 29798119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Complemental strand, 29987147 - 29987115
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    ||||||||||||||||||||||||| |||||||    
T  29987147 aatgcataatatatgcaaggtctggagttcgaa 29987115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 30937501 - 30937533
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||| ||||||||||||||||||||||||||||    
T  30937501 aatgtataatatatgcaaggtctggggttcgaa 30937533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 32944762 - 32944794
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||| ||||||||||||||    
T  32944762 aatgcataatatatgcaacgtctggggttcgaa 32944794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 38862128 - 38862160
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    ||||||||| |||||||||||||||||||||||    
T  38862128 aatgcataaaatatgcaaggtctggggttcgaa 38862160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 41973281 - 41973313
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||| ||||||||||    
T  41973281 aatgcataatatatgcaaggtccggggttcgaa 41973313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 222 - 250
Target Start/End: Complemental strand, 45383149 - 45383121
Alignment:
Q  222 atatatgcaaggtctggggttcgaatccc 250  Q
    |||||||||||||||||||||||||||||    
T  45383149 atatatgcaaggtctggggttcgaatccc 45383121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 246
Target Start/End: Original strand, 45481519 - 45481551
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaa 246  Q
    |||||||||||||||||||||| ||||||||||    
T  45481519 aatgcataatatatgcaaggtccggggttcgaa 45481551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Complemental strand, 50638951 - 50638915
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    ||||||||||||||||||||||  |||||||||||||    
T  50638951 aatgcataatatatgcaaggtccagggttcgaatccc 50638915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 243
Target Start/End: Complemental strand, 42369 - 42340
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttc 243  Q
    ||||||||||||||||||||||||||||||    
T  42369 aatgcataatatatgcaaggtctggggttc 42340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 243
Target Start/End: Original strand, 99063 - 99092
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttc 243  Q
    ||||||||||||||||||||||||||||||    
T  99063 aatgcataatatatgcaaggtctggggttc 99092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 214 - 243
Target Start/End: Original strand, 122917 - 122946
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttc 243  Q
    ||||||||||||||||||||||||||||||    
T  122917 aatgcataatatatgcaaggtctggggttc 122946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 37561 - 37597
Alignment:
Q  214 aatgcataatatatgcaaggtctggggttcgaatccc 250  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  37561 aatgcataaaatatgcaaggtccggggttcgaatccc 37597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University