View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21128_low_36 (Length: 250)
Name: NF21128_low_36
Description: NF21128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21128_low_36 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 30024758 - 30024997
Alignment:
| Q |
11 |
caaaggcataagagtaagccttagggcaagccaacttaaagattctcgaataactagtgggcttacaagcctgtgggcttccataactacccgtgcaaca |
110 |
Q |
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| T |
30024758 |
caaaggcataagagtaagccttagggcaagccaacttaaagattctcgaataactagtgggcttacaagcctgtgggcttccataactacccgtgcaaca |
30024857 |
T |
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| Q |
111 |
atacttaggtgagttaaaagcataacaagcactcttacaacccaccacttgattcatgtcacttgacctaacttgaaggctcatgggacacatgacgtta |
210 |
Q |
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| T |
30024858 |
atactcaggtgagttaaaagcataacaagcactcttacagcccaccacttgattcatgtcacttgacctaacttgaaggctcatgggacacatgacgtta |
30024957 |
T |
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| Q |
211 |
agatccctaacacaaccggcgaattcacattttccgttac |
250 |
Q |
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| T |
30024958 |
agatccctaacacaaccggcgaattcacattttccgttac |
30024997 |
T |
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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 179
Target Start/End: Original strand, 45273198 - 45273361
Alignment:
| Q |
16 |
gcataagagtaagccttagggcaagccaacttaaagattctcgaataactagtgggcttacaagcctgtgggcttccataactacccgtgcaacaatact |
115 |
Q |
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||||||||||||||||| |||||||| || |||||||| |||||| ||||||||| || | ||||||| | ||| | |||| || || |||||| |
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| T |
45273198 |
gcataagagtaagcctttgggcaagcagttttgaagattcttgaataagcagtgggcttgcaggtctgtggggtaccaaagttaccagtacagcaatacc |
45273297 |
T |
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| Q |
116 |
taggtgagttaaaagcataacaagcactcttacaacccaccacttgattcatgtcacttgacct |
179 |
Q |
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|||| ||||| |||||| ||||||||| ||||||||||||| || ||| |||||| |||||| |
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| T |
45273298 |
taggagagttgaaagcagcacaagcacttctacaacccaccacgtgcttcttgtcacgtgacct |
45273361 |
T |
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