View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21128_low_37 (Length: 250)

Name: NF21128_low_37
Description: NF21128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21128_low_37
NF21128_low_37
[»] chr4 (8 HSPs)
chr4 (9-250)||(20863214-20863455)
chr4 (13-211)||(3399893-3400091)
chr4 (118-222)||(3398983-3399087)
chr4 (118-222)||(3399214-3399318)
chr4 (118-222)||(3399445-3399549)
chr4 (120-222)||(3399658-3399760)
chr4 (118-197)||(3398777-3398856)
chr4 (133-250)||(20863016-20863133)
[»] chr1 (1 HSPs)
chr1 (15-222)||(7133789-7134005)


Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 20863455 - 20863214
Alignment:
Q  9 agcagagatttataagtgaaattatagttaatgcattcatatctcatgtgccgcgaaagaacatggttatgaccagcgatggcgaccccgatgtgattat 108  Q
    |||| ||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||  |  ||||||||||||||||||||||||||||||||    
T  20863455 agcacagatttataagtgtaattatagttaatgcattcatatctcatgtaccacgaaagaacacagccatgaccagcgatggcgaccccgatgtgattat 20863356  T
Q  109 caatcttgtagatcttcgtctgatgagaatataattcggaattggctttgttaacacacgcgagaaccacgtgagttttggatcggagacttactgctgc 208  Q
    ||| |||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20863355 caacctttaagatcttcatctgatgagaatataattcggaattggctttgttaacacacgcgagaaccacgtgagttttggatcggagacttattgctgc 20863256  T
Q  209 tgaaccttgcttaaaagcttcgaattccgccttaagtgcttc 250  Q
    |||||||||||||||||||||| ||| |||||||||||||||    
T  20863255 tgaaccttgcttaaaagcttcgtatttcgccttaagtgcttc 20863214  T

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Target: chr4; HSP #2
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 3400091 - 3399893
Alignment:
Q  13 gagatttataagtgaaattatagttaatgcattcatatctcatgtgccgcgaaagaacatggttatgaccagcgatggcgaccccgatgtgattatcaat 112  Q
    |||||| ||||||| |||||||||||| ||||||| ||||||||| ||||||||||||| ||  ||| ||||||||||||||||| ||||||| ||||||    
T  3400091 gagattcataagtgtaattatagttaacgcattcagatctcatgtaccgcgaaagaacacggccatgtccagcgatggcgaccccaatgtgatcatcaat 3399992  T
Q  113 cttgtagatcttcgtctgatgagaatataattcggaattggctttgttaacacacgcgagaaccacgtgagttttggatcggagacttactgctgctga 211  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  3399991 cttgaagatcttcgtctgatgataatataattcggaattggctttgttaacacacgcgagaaccacgtgagttttggatcggagacctattgctgctga 3399893  T

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Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 3399087 - 3398983
Alignment:
Q  118 agatcttcgtctgatgagaatataattcggaattggctttgttaacacacgcgagaaccacgtgagttttggatcggagacttactgctgctgaaccttg 217  Q
    |||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |  |||||||| ||||||    
T  3399087 agatcttcttctgacgagaagataattcggaattggctttgttaacacacgcgggaaccacgtgagttttggatcggagatctgttgctgctggaccttg 3398988  T
Q  218 cttaa 222  Q
    |||||    
T  3398987 cttaa 3398983  T

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Target: chr4; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 3399318 - 3399214
Alignment:
Q  118 agatcttcgtctgatgagaatataattcggaattggctttgttaacacacgcgagaaccacgtgagttttggatcggagacttactgctgctgaaccttg 217  Q
    |||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |  |||||||| ||||||    
T  3399318 agatcttcttctgacgagaagataattcggaattggctttgttaacacacgcgggaaccacgtgagttttggatcggagatctgttgctgctggaccttg 3399219  T
Q  218 cttaa 222  Q
    |||||    
T  3399218 cttaa 3399214  T

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Target: chr4; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 118 - 222
Target Start/End: Complemental strand, 3399549 - 3399445
Alignment:
Q  118 agatcttcgtctgatgagaatataattcggaattggctttgttaacacacgcgagaaccacgtgagttttggatcggagacttactgctgctgaaccttg 217  Q
    |||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |  |||||||| ||||||    
T  3399549 agatcttcttctgacgagaagataattcggaattggctttgttaacacacgcgggaaccacgtgagttttggatcggagatctgttgctgctggaccttg 3399450  T
Q  218 cttaa 222  Q
    |||||    
T  3399449 cttaa 3399445  T

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Target: chr4; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 120 - 222
Target Start/End: Complemental strand, 3399760 - 3399658
Alignment:
Q  120 atcttcgtctgatgagaatataattcggaattggctttgttaacacacgcgagaaccacgtgagttttggatcggagacttactgctgctgaaccttgct 219  Q
    |||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |  |||||||| ||||||||    
T  3399760 atcttcttctgacgagaagataattcggaattggctttgttaacacacgcgggaaccacgtgagttttggatcggagatctgttgctgctggaccttgct 3399661  T
Q  220 taa 222  Q
    |||    
T  3399660 taa 3399658  T

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Target: chr4; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 118 - 197
Target Start/End: Complemental strand, 3398856 - 3398777
Alignment:
Q  118 agatcttcgtctgatgagaatataattcggaattggctttgttaacacacgcgagaaccacgtgagttttggatcggaga 197  Q
    |||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3398856 agatcttcttctgacgagaagataattcggaattggctttgttaacacacgcgggaaccacgtgagttttggatcggaga 3398777  T

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Target: chr4; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 133 - 250
Target Start/End: Complemental strand, 20863133 - 20863016
Alignment:
Q  133 gagaatataattcggaattggctttgttaacacacgcgagaaccacgtgagttttggatcggagacttactgctgctgaaccttgcttaaaagcttcgaa 232  Q
    ||||| |||||| | | |||||||||||||||| |||| |||||||| ||||||||||||||||||| | ||||||||||| |||||| |  |||||||     
T  20863133 gagaagataattggtatttggctttgttaacacgcgcgggaaccacgcgagttttggatcggagactcattgctgctgaacgttgcttgactgcttcgat 20863034  T
Q  233 ttccgccttaagtgcttc 250  Q
    ||||||||||||||||||    
T  20863033 ttccgccttaagtgcttc 20863016  T

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Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 7133789 - 7134005
Alignment:
Q  15 gatttataagtgaaattatagttaatgcattcatatctcatgtgccgcgaaagaacatggttat---------gaccagcgatggcgaccccgatgtgat 105  Q
    |||| ||||||| |||||||||||||||||||| ||||||||| ||| ||||||||| ||  ||         |||| |||||||| || ||||||||||    
T  7133789 gattcataagtgtaattatagttaatgcattcagatctcatgtaccgggaaagaacacggccatcggcggtgagaccggcgatggcaacaccgatgtgat 7133888  T
Q  106 tatcaatcttgtagatcttcgtctgatgagaatataattcggaattggctttgttaacacacgcgagaaccacgtgagttttggatcggagacttactgc 205  Q
     ||||| |||  |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||    
T  7133889 catcaaccttaaagatcttcttctgatgagaagataattcggaattggctttgttaacacacgcgagaaccacgtgagttttggatcggagacctattgc 7133988  T
Q  206 tgctgaaccttgcttaa 222  Q
    |||||||||||||||||    
T  7133989 tgctgaaccttgcttaa 7134005  T

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