View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21128_low_41 (Length: 244)
Name: NF21128_low_41
Description: NF21128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21128_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 3572399 - 3572296
Alignment:
| Q |
1 |
aacaaccaaaaagagacaaatctagaaagcgctaaaagtaagttaattaatggcaattcattcctcgggaattgaacaaaatcaatccctaagaatagaa |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
3572399 |
aacaaccaaaaagagacaaatctagaaagcactaaaagtaaggtaattaatggcaattcattcctcgagaattgaacaaaatcaatccctaggaatagaa |
3572300 |
T |
|
| Q |
101 |
tcac |
104 |
Q |
| |
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|||| |
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|
| T |
3572299 |
tcac |
3572296 |
T |
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