View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21128_low_42 (Length: 240)
Name: NF21128_low_42
Description: NF21128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21128_low_42 |
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| [»] scaffold0188 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 9 - 220
Target Start/End: Original strand, 50964884 - 50965095
Alignment:
| Q |
9 |
ttctttggtgacaacatatggcttatatatagtgtggttagtaaatcaatgtgtgaaagggaaacatgagatgtggaatcatcagctgggtgccaaaatc |
108 |
Q |
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| T |
50964884 |
ttctttggtgacaacgtatggcttatatatagtgtggttagtaaatcaatgtgttaaagggaaacatgagatgtggaatcatcaactgggtgccaaaatc |
50964983 |
T |
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| Q |
109 |
tgttaaaaaaccaattggaatcagcctcatcagaataaccattttgatttctgtgatagttatagtgagcatgtgttctgttctttatgtcgaaaatggc |
208 |
Q |
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| T |
50964984 |
tgttaaaaaaccaattggaatcaacctcatcagaataaccattttgatttctgtgatagttatagtgagcatgtgttctgttctttatgtcgaaaatggc |
50965083 |
T |
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| Q |
209 |
atgtccaaagct |
220 |
Q |
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| T |
50965084 |
atgtccaaagct |
50965095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 48 - 220
Target Start/End: Original strand, 50980374 - 50980546
Alignment:
| Q |
48 |
agtaaatcaatgtgtgaaagggaaacatgagatgtggaatcatcagctgggtgccaaaatctgttaaaaaaccaattggaatcagcctcatcagaataac |
147 |
Q |
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| T |
50980374 |
agtaaatcaatgtatcaatggaaaacatgagcggtggaatcatcaactggatgccaaaatctgttgaaaaaccaatgggaatcagcctcaaccgaataac |
50980473 |
T |
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| Q |
148 |
cattttgatttctgtgatagttatagtgagcatgtgttctgttctttatgtcgaaaatggcatgtccaaagct |
220 |
Q |
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| T |
50980474 |
catcttgatttctgtgccagctatagtgagcatgtgttctgttctttatgtcgaaaatggcatgtccaaagct |
50980546 |
T |
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Target: chr4 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 53 - 220
Target Start/End: Complemental strand, 13641467 - 13641300
Alignment:
| Q |
53 |
atcaatgtgtgaaagggaaacatgagatgtggaatcatcagctgggtgccaaaatctgttaaaaaaccaattggaatcagcctcatcagaataaccattt |
152 |
Q |
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| T |
13641467 |
atcaacgtgttaatgggaaacatgagttgtggaatcatcaactgggtgccaaaatctgttgaagaaccaatgagaatcagcctcaacagagtaaccatct |
13641368 |
T |
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| Q |
153 |
tgatttctgtgatagttatagtgagcatgtgttctgttctttatgtcgaaaatggcatgtccaaagct |
220 |
Q |
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| T |
13641367 |
tgattcctatgccagctgtagtgagcatgtgttctgttctttatgtcaaaaatggcatgtccaaagct |
13641300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0188 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0188
Description:
Target: scaffold0188; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 67 - 220
Target Start/End: Complemental strand, 11832 - 11679
Alignment:
| Q |
67 |
gggaaacatgagatgtggaatcatcagctgggtgccaaaatctgttaaaaaaccaattggaatcagcctcatcagaataaccattttgatttctgtgata |
166 |
Q |
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| T |
11832 |
gggaaccatgaggtttggaatcatcaaccgggttccaaaatctgttgaaaaaccaaagggaatcactcttaacagcatcaccatcttgatttctatgcca |
11733 |
T |
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| Q |
167 |
gttatagtgagcatgtgttctgttctttatgtcgaaaatggcatgtccaaagct |
220 |
Q |
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| T |
11732 |
gctatagtaagcatgtgtcctattctttatgtcaaaaattgcatgtccaaagct |
11679 |
T |
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