View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21128_low_43 (Length: 239)
Name: NF21128_low_43
Description: NF21128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21128_low_43 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 20 - 239
Target Start/End: Original strand, 10548592 - 10548803
Alignment:
| Q |
20 |
actgatcatctagcattgcttaaattcaaggaatctataaccagtgacccacatagaatccttgattcttcgaatggttctatccatttttgcaactggc |
119 |
Q |
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| T |
10548592 |
actgatcatctatcattgcttaaattcaaggaatctataaccagtgacccacatagaatgcttgattcttggaatggttctatccatttttgcaactggc |
10548691 |
T |
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| Q |
120 |
atggaatcacgtaaccacgtgcatcaaagagttacagcgttaaagttacctggatataagttgcatggatctttatcttctcatgtcgccaatctcactt |
219 |
Q |
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| T |
10548692 |
atggaatcacg--------tgcatcaaagagttacagcgttgaagttacctggatataagttgcatggatctttatcttctcatgtcgccaatctcactt |
10548783 |
T |
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| Q |
220 |
ttctcagacacgtcaacctt |
239 |
Q |
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|||||||||||||||||||| |
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| T |
10548784 |
ttctcagacacgtcaacctt |
10548803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 64 - 239
Target Start/End: Original strand, 10556753 - 10556930
Alignment:
| Q |
64 |
tgacccacatagaatccttgattcttcgaatggttctatccatttttgcaactggcatggaatcacgt--aaccacgtgcatcaaagagttacagcgtta |
161 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| | ||| | |||||||||||||||| | ||| |
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| T |
10556753 |
tgacccacatagaatccttgattcttggaatggttctatccatttttgcaactggtatggaatcacatgcaacaccatgcatcaaagagttactgagttg |
10556852 |
T |
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| Q |
162 |
aagttacctggatataagttgcatggatctttatcttctcatgtcgccaatctcacttttctcagacacgtcaacctt |
239 |
Q |
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| T |
10556853 |
aagttacctggatataagttgcatggatccttatcttctcatgctgccaatcttacttttctcagacacgtcaacctt |
10556930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 9838748 - 9838576
Alignment:
| Q |
20 |
actgatcatctagcattgcttaaattcaaggaatctataaccagtgacccacatagaatccttgattcttcgaatggttctatccatttttgcaactggc |
119 |
Q |
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| T |
9838748 |
actgatcatcttgcattgctccaattcaaagaatcaatatccagtgacccaaatggagtcttagattcttggaattcttctatccacttctgcaactggc |
9838649 |
T |
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| Q |
120 |
atggaatcac--gtaaccacgtgcatcaaagagttacagcgttaaagttacctggatataagttgcatggatc |
190 |
Q |
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| T |
9838648 |
atggaatcacatgcaaccccatgcatcaaagagttacaaaattgaacttacaaggatacaagttgcatggatc |
9838576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 10592736 - 10592840
Alignment:
| Q |
20 |
actgatcatctagcattgcttaaattcaaggaatctataaccagtgacccacatagaatccttgattcttcgaatggttctatccatttttgcaactggc |
119 |
Q |
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||||||||||| |||||||| ||||||||||| |||||| |||| |||||| |||||||||| ||||||| ||||| ||||| || || |||||||||| |
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| T |
10592736 |
actgatcatctggcattgctcaaattcaaggagtctatatccagcgacccatatagaatcctcgattcttggaatgcttctacacaattctgcaactggc |
10592835 |
T |
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| Q |
120 |
atgga |
124 |
Q |
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||||| |
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| T |
10592836 |
atgga |
10592840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 12930065 - 12930270
Alignment:
| Q |
20 |
actgatcatctagcattgcttaaattcaaggaatctataaccagtgacccacatagaatccttgattcttcgaatggttctatccatttttgcaactggc |
119 |
Q |
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||||||||||| |||||||| |||||||| ||||| ||||| ||||||||| | | | ||||| |||| |||| ||| ||||| || ||||| |||| |
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| T |
12930065 |
actgatcatctggcattgctcaaattcaaagaatcaataactagtgacccatacaatactcttgaatcttggaattcttccatccacttctgcaagtggc |
12930164 |
T |
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| Q |
120 |
atggaatcac--gtaaccacgtgcatcaaagagttacagcgttaaagttacctggatataagttgcatggatctttatcttctcatgtcgccaatctcac |
217 |
Q |
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|||||||||| ||| || | ||||| || ||||||||| ||| | || ||||| |||| ||||||||||||||| | ||||| ||||||||| |
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| T |
12930165 |
atggaatcacatgtagccccatgcatgaacgagttacagagttgagcctaaaaagatatcagttacatggatctttatctccccatgtttgcaatctcac |
12930264 |
T |
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| Q |
218 |
ttttct |
223 |
Q |
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|||||| |
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| T |
12930265 |
ttttct |
12930270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 129
Target Start/End: Complemental strand, 31469561 - 31469464
Alignment:
| Q |
32 |
gcattgcttaaattcaaggaatctataaccagtgacccacatagaatccttgattcttcgaatggttctatccatttttgcaactggcatggaatcac |
129 |
Q |
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|||||||| |||||||||||||| ||| ||| ||| || |||||||| | || |||| |||| | |||| || |||||||| |||||||||||||| |
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| T |
31469561 |
gcattgctcaaattcaaggaatcaatatccaaagactcaaatagaatcttagactcttggaatagctctacacaattttgcaagtggcatggaatcac |
31469464 |
T |
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