View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21128_low_47 (Length: 231)
Name: NF21128_low_47
Description: NF21128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21128_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 44000937 - 44001136
Alignment:
| Q |
18 |
aagaagcgtctcattgtaagcagtgtaaacgacccaaatgaactacttctttgggattcctcaatttcatctgttttcagcaatgtatcaaactctactg |
117 |
Q |
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| T |
44000937 |
aagaagcgtctcattgtaagcagtgtaaacgatccagatgaactacttctttgggattcctcaatttcatctgttttcagcaatgtatcaaactctactg |
44001036 |
T |
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| Q |
118 |
tcacacagactcaactcaattgcccaatttccttcaatagtctttttaggttattataaggcaataatttgg-aatttgctcttgccacggtattctctg |
216 |
Q |
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| T |
44001037 |
tcacacagactcaactcaattgcccaatttccttcaatagtctttttaggttattatacggcaataatttggaaatttgctcttgccacggtattctctg |
44001136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 27 - 151
Target Start/End: Original strand, 43991391 - 43991518
Alignment:
| Q |
27 |
ctcattgtaagcagtgtaaacgacccaaatgaactacttctttgggattcctcaatttcatctgttttcagcaatgtatcaaactct---actgtcacac |
123 |
Q |
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|||||||||||||||||||||||| || ||||| |||| ||||||||||||||||||| |||||||||||||||| ||| |||||| | ||||||| |
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| T |
43991391 |
ctcattgtaagcagtgtaaacgactcaggtgaaccacttttttgggattcctcaatttcctctgttttcagcaatgcatccaactctagcagcgtcacac |
43991490 |
T |
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| Q |
124 |
agactcaactcaattgcccaatttcctt |
151 |
Q |
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| T |
43991491 |
agactcaactcatttgcccattttcctt |
43991518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 43996959 - 43997100
Alignment:
| Q |
18 |
aagaagcgtctcattgtaagcagtgtaaacgacccaaatgaactacttctttgggattcctcaatttcatctgttttcagcaatgtatcaaactct---a |
114 |
Q |
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||||||| |||||||||||||||| |||||||| || |||| | ||||||||||||| |||||||| |||||||||||||||| ||| |||||| | |
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| T |
43996959 |
aagaagcatctcattgtaagcagtttaaacgactcaggtgaatcatttctttgggattcatcaatttcctctgttttcagcaatgcatccaactctagca |
43997058 |
T |
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| Q |
115 |
ctgtcacacagactcaactcaattgcccaatttccttcaata |
156 |
Q |
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||||||||||| |||||||| |||||||||||||| |||| |
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| T |
43997059 |
gcgtcacacagacacaactcaagtgcccaatttccttgaata |
43997100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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