View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21128_low_5 (Length: 556)
Name: NF21128_low_5
Description: NF21128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21128_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 330
Target Start/End: Complemental strand, 54278403 - 54278089
Alignment:
| Q |
16 |
tattttatgctaatgctatggattgatggtgtggtttcattatacacataggtcgctagatgtgtgtattgaatttattgttgcttagatcgttaaattt |
115 |
Q |
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| T |
54278403 |
tattttatgctaatgctatggattgatggtgtggtttcattatacacataggtcgctagatgtgtgtattgaatttattgttgcttagatcgttaaattt |
54278304 |
T |
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| Q |
116 |
agtcgtcattaattgtttgtccgacacattttcttagcatgtttgattgaatttacaacatatttttgtacactaccacaataactaattcatctgagat |
215 |
Q |
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| T |
54278303 |
agtcgtcattaattgtttgtccgacacattttcttagcatgtttgattgaatttacaacatatttttgtacactaccacaataactaattcatctgagat |
54278204 |
T |
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| Q |
216 |
ccattttagagaaacttgttgaaaatagaaaatcaaattaacagcgtgtacttcttttgcgtatagcaaaatagttaatattattgaattgaagacatta |
315 |
Q |
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| T |
54278203 |
ccattttagagaaacttgttgaaaatagaaaatcaaattaacaacgtgtacttcttttgcgtatagcaaaatagttaatattattgaattgaagacatta |
54278104 |
T |
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| Q |
316 |
caataacattgcttc |
330 |
Q |
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| T |
54278103 |
caataacattgcttc |
54278089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 395 - 542
Target Start/End: Complemental strand, 54278024 - 54277874
Alignment:
| Q |
395 |
tatgagattcaattga---acgatgtatgaagttaaatcttatttctttttagtgggataagaagccatcttgtagagtccacaaatcccttcagacttt |
491 |
Q |
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| T |
54278024 |
tatgagattcaattgatcaacgatgtatgaagttaaatcttatttctttttagtgggataagaagccatcttgtagagtccacaaatcccttcagacttt |
54277925 |
T |
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| Q |
492 |
ccaatgtttctcttcatcctaataaaccctttctcaccccactttgctccc |
542 |
Q |
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| T |
54277924 |
ccaatgtttctcttcatcctaataaaccctttctcaccccactttgctccc |
54277874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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