View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21128_low_7 (Length: 516)
Name: NF21128_low_7
Description: NF21128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21128_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 16 - 506
Target Start/End: Complemental strand, 55474475 - 55473980
Alignment:
| Q |
16 |
acttttctgcatctgatacaactacacgtacgattcaattcgattcaatt----------aggtattggatttcttcttaggatttagagatcctcaatt |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
55474475 |
acttttctgcatctgatacaactacacgtacgattcaattcgattcaattcaattcaattaggtattggatttcttcttaggatttagagatcctcaatt |
55474376 |
T |
|
| Q |
106 |
cattatttacttttgctctttcaggcagacagactgattgatcgatccatcgatcaagcaaagaaagaaactatgagcggagctgttattgttgctgttg |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55474375 |
cattatttacttttgctctttcaggcagacagactgattgatcgatccatcgatcaagcaaagaaagaaactatgagcggagctgttattgttgctgttg |
55474276 |
T |
|
| Q |
206 |
ccgctgctatcggtaatttactccaaggatgggataatgccactattgcaggtaggtcgtctcttttctaatctattctattctattctcctcttcttcg |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
55474275 |
ccgctgctatcggtaatttactccaaggatgggataatgccactattgcaggtaggtcgtctcttttctaatctattcta-----ttctcctcatcttcg |
55474181 |
T |
|
| Q |
306 |
atctaatacaacaattattcttgttgaaacttatttattaattattattctctctccaggatctattttatacataaagagggaatttcaattacaaagt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55474180 |
atctaatacaacaattattcttgttgaaacttatttattaattattattctctctccaggatctattttatacataaagagggaatttcaattacaaagt |
55474081 |
T |
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| Q |
406 |
gaacccacagtcgaaggtctaattgtggccatgtcacttataggagccaccgttgttactacatgctctggagccctatcagacttgtttggacgacgcc |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55474080 |
gaacccacagtcgaaggtctaattgtggccatgtcacttataggagccaccgttgttactacatgctctggagccctatcagacttgtttggacgacgcc |
55473981 |
T |
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