View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21128_low_8 (Length: 481)
Name: NF21128_low_8
Description: NF21128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21128_low_8 |
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| [»] chr6 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 10 - 481
Target Start/End: Original strand, 31649542 - 31650024
Alignment:
| Q |
10 |
tcatcatttttaataagataaatagatagaactacctttgagaccttactctcttcagttgttcctgatgcaagagcctcaagtactgttattcttgatt |
109 |
Q |
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| T |
31649542 |
tcatcatttttaataagataaatagatagaactacctttgagaccttactctcttcagttgttcctgatgcaagagcctcaagtactgttattcttgatt |
31649641 |
T |
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| Q |
110 |
tatatttttcttcacgagtcttgaaaagattgttttgctgaagacaaagggtaagacagcaacnnnnnnnnnncaagaaaaacggacaaaactaagtctc |
209 |
Q |
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| T |
31649642 |
tatatttttcttcacgagtcttgaaaagattgttttgctgaagacaaagggtaagacagcaacataaaaaaaacgagaaaaacggacaaaactaggtctc |
31649741 |
T |
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| Q |
210 |
atttactttctaaaaacgatgtaatcgacatacagtttttaaatgctcttgttgtgtagatatacgccgctcaatctcttggacaacttttcttagcaag |
309 |
Q |
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| T |
31649742 |
gtttactttctaaaaacgatgtaatcgacatacagtttttaaatgctcttgttgtgtagatatacgccgctcaatctcttggacaacttttcttagcaag |
31649841 |
T |
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| Q |
310 |
cacgccacacgctaagatgaaaagaaaattgtgttagataatatacaaaaacaaaacatgtagtttcatgaatgcatttatgatttatat---------- |
399 |
Q |
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| T |
31649842 |
cacgccacacgctaagatgaaaagaaaattttgttagataatatacaaaaacaaaacatgtactttcatgaatgcatttatgatttatatacaaaagtaa |
31649941 |
T |
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| Q |
400 |
-acaaaagcaaatcaagagtatttatcatacaggaggtatttctccatttcttctttcgacactttcttctagtataccattg |
481 |
Q |
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| T |
31649942 |
cacaaaagcaaatcaagagtatttatcatacaggaggtatttctccatttcttctttcaacactttcttctagtataccattg |
31650024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 425 - 481
Target Start/End: Complemental strand, 43878524 - 43878468
Alignment:
| Q |
425 |
catacaggaggtatttctccatttcttctttcgacactttcttctagtataccattg |
481 |
Q |
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|||||| ||||||||||||| |||||||| ||||| |||||||| || ||||||||| |
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| T |
43878524 |
catacatgaggtatttctccgtttcttctctcgacgctttcttcaagaataccattg |
43878468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 151
Target Start/End: Complemental strand, 43878891 - 43878792
Alignment:
| Q |
52 |
accttactctcttcagttgttcctgatgcaagagcctcaagtactgttattcttgatttatatttttcttcacgagtcttgaaaagattgttttgctgaa |
151 |
Q |
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| T |
43878891 |
acctcactctcttctctagttccagatgcaagtgcctcgagtactcttattctcgactgatatttttcttcccgggccttaaaaagattactttgctgaa |
43878792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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