View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21128_low_9 (Length: 471)
Name: NF21128_low_9
Description: NF21128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21128_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 5e-91; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 281 - 462
Target Start/End: Original strand, 35765891 - 35766072
Alignment:
| Q |
281 |
attcatctgatactcactagtgccatgatgatatccagggttcttagaccatgacatgttgtctctccttctgttatatccatcccatgttccccaattc |
380 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35765891 |
attcatctgatagtcactagtgccatgatgatatccagggttcttagaccatgacatgttgtctctccttctgttatatccatcccatgttccccaattc |
35765990 |
T |
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| Q |
381 |
ccattcccaccatttcttccttgatacttgttatgcaagttgccaccaaagcgctccctctgaatccacctttgagaattat |
462 |
Q |
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| T |
35765991 |
ccactcccaccatttcttccttgatacttgttatgcaagttgccaccaaagcgctccctctgaatccgcctttgagaattat |
35766072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 114 - 240
Target Start/End: Original strand, 35765727 - 35765856
Alignment:
| Q |
114 |
attaatactgaaaaaacaattgttct---atgatataaatctcacataggagtcctttcttgcagtccaaggcatctgatcttcatttaccatgcactag |
210 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35765727 |
attaatactgaaaaaaccattgttcttatatgatataaatctcacataggagtcctttcttgcagtccaaagcatctgatcttcatttaccatgcactag |
35765826 |
T |
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| Q |
211 |
gagtagataccttgtctgcataagcaaaat |
240 |
Q |
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|||||| ||||||||||||||||||||||| |
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| T |
35765827 |
gagtagttaccttgtctgcataagcaaaat |
35765856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 281 - 459
Target Start/End: Original strand, 35755259 - 35755443
Alignment:
| Q |
281 |
attcatctgatactcactagtgccatgatgatatccagggttcttagaccatgacatgttgt---ctctccttctgttatatccatcccatgttccccaa |
377 |
Q |
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|||||||||||||||| || |||||| ||||| | ||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
35755259 |
attcatctgatactcattattgccataatgattttcagggctcttagaccatgacatgttgttttctctccttctgctatatccatcccatgttccccaa |
35755358 |
T |
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| Q |
378 |
ttcccattcccaccatttcttcc---ttgatacttgttatgcaagttgccaccaaagcgctccctctgaatccacctttgagaat |
459 |
Q |
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|||||| |||||||||||||||| ||| |||||||||||||||| |||||| || ||||||||||||||||||| ||||||| |
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| T |
35755359 |
ttcccactcccaccatttcttccttgttggtacttgttatgcaagtcaccaccatagtgctccctctgaatccacctctgagaat |
35755443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 281 - 448
Target Start/End: Original strand, 35798847 - 35799011
Alignment:
| Q |
281 |
attcatctgatactcactagtgccatgatgatatccagggttcttagaccatgacatgttg---tctctccttctgttatatccatcccatgttccccaa |
377 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||| || |||||||||||||||||||||||||||| |
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| T |
35798847 |
attcatctgatactcattagtgccatgatgatatccagggttcttagaccaagacatgttgttttctttctttctgttatatccatcccatgttcccca- |
35798945 |
T |
|
| Q |
378 |
ttcccattcccaccatttcttccttgatacttgttatgcaagttgccaccaaagcgctccctctgaatcca |
448 |
Q |
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||| |||| |||||||||||||||||||||||| |||| |||||| | |||||||||||| |||| |
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| T |
35798946 |
-----atttccactatttcttccttgatacttgttatgaaagtcaccaccatatcgctccctctgattcca |
35799011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 281 - 420
Target Start/End: Original strand, 35760411 - 35760550
Alignment:
| Q |
281 |
attcatctgatactcactagtgccatgatgatatccagggttcttagaccatgacatgttgtctctccttctgttatatccatcccatgttccccaattc |
380 |
Q |
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|||||||||||| ||| |||| ||||||| || ||| ||||| |||||||| |||||||| |||||| ||||||||||||||||||||| ||||||||| |
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| T |
35760411 |
attcatctgatattcattagtaccatgataatgtccggggttattagaccacgacatgttttctctctttctgttatatccatcccatgctccccaattt |
35760510 |
T |
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| Q |
381 |
ccattcccaccatttcttccttgatacttgttatgcaagt |
420 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||| |
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| T |
35760511 |
ccatgcccgccatttcttccttgatacttgttatgcaagt |
35760550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 306 - 459
Target Start/End: Original strand, 35785413 - 35785569
Alignment:
| Q |
306 |
tgatgatatccagggttcttagaccatgacatgttgt---ctctccttctgttatatccatcccatgttccccaattcccattcccaccatttcttcctt |
402 |
Q |
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|||||||| ||||||||| |||||| ||||| |||| ||||| |||||||||| |||||||||||| ||||||| | ||||| |||||||||||||| |
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| T |
35785413 |
tgatgataaccagggttcatagaccgagacatcttgttttctctctttctgttatacccatcccatgttgcccaattactattccaaccatttcttcctt |
35785512 |
T |
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| Q |
403 |
gatacttgttatgcaagttgccaccaaagcgctccctctgaatccacctttgagaat |
459 |
Q |
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|||| ||||||||||||||||||||| || |||||||||||||||||| ||||||| |
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| T |
35785513 |
gatatttgttatgcaagttgccaccatagttctccctctgaatccacctctgagaat |
35785569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 281 - 459
Target Start/End: Original strand, 35789219 - 35789394
Alignment:
| Q |
281 |
attcatctgatactcactagtgccatgatgatatccagggttcttagaccatgacatgttg---tctctccttctgttatatccatcccatgttccccaa |
377 |
Q |
| |
|
|||||||||||||||| |||| ||||||| ||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
35789219 |
attcatctgatactcattagttccatgatcatatccagggttcgtagaccatgatatgttgttttctctccttctgttatatccatcccatgtccccca- |
35789317 |
T |
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| Q |
378 |
ttcccattcccaccatttcttccttgatacttgttatgcaagttgccaccaaagcgctccctctgaatccacctttgagaat |
459 |
Q |
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||| |||| |||||||||||||||||||||||| |||| |||||| | ||||||||||| |||| | |||||||| |
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| T |
35789318 |
-----atttccactatttcttccttgatacttgttatgaaagtcaccaccatattgctccctctgattccatccttgagaat |
35789394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 155 - 240
Target Start/End: Original strand, 35760267 - 35760352
Alignment:
| Q |
155 |
cataggagtcctttcttgcagtccaaggcatctgatcttcatttaccatgcactaggagtagataccttgtctgcataagcaaaat |
240 |
Q |
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||||||||||||| | ||||||||||||| ||||||||||||||||||||| |||||||| |||||| || |||||| ||||| |
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| T |
35760267 |
cataggagtccttgcatgcagtccaaggcccttgatcttcatttaccatgcaccaggagtagctaccttttccacataagaaaaat |
35760352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 35785277 - 35785347
Alignment:
| Q |
155 |
cataggagtcctttcttgcagtccaaggcatctgatcttcatttaccatgcactaggagtagataccttgt |
225 |
Q |
| |
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|||| ||||| || |||||||| ||||| || |||||||||||||||||||| ||||||||| |||||||| |
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| T |
35785277 |
catatgagtctttgcttgcagtacaaggtatttgatcttcatttaccatgcagtaggagtagctaccttgt |
35785347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 35789088 - 35789149
Alignment:
| Q |
165 |
ctttcttgcagtccaaggcatctgatcttcatttaccatgcactaggagtagataccttgtc |
226 |
Q |
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|||||||| |||||||||||| |||| |||||| ||||||||| |||||||| ||||||||| |
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| T |
35789088 |
ctttcttgtagtccaaggcatttgatattcattcaccatgcacaaggagtagctaccttgtc |
35789149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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