View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21129_low_3 (Length: 321)

Name: NF21129_low_3
Description: NF21129
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21129_low_3
NF21129_low_3
[»] chr8 (8 HSPs)
chr8 (2-307)||(25617227-25617523)
chr8 (2-307)||(25677973-25678265)
chr8 (2-307)||(25391349-25391641)
chr8 (2-307)||(25358318-25358610)
chr8 (2-58)||(25494703-25494759)
chr8 (256-306)||(25494652-25494702)
chr8 (118-242)||(9229278-9229403)
chr8 (163-246)||(44300477-44300558)
[»] scaffold0466 (1 HSPs)
scaffold0466 (1-307)||(8178-8481)
[»] chr6 (4 HSPs)
chr6 (49-243)||(1094381-1094573)
chr6 (118-258)||(34249307-34249448)
chr6 (178-246)||(1090747-1090817)
chr6 (120-215)||(20728209-20728303)
[»] chr5 (3 HSPs)
chr5 (118-247)||(16098386-16098519)
chr5 (118-247)||(32743607-32743737)
chr5 (30-247)||(39777363-39777577)
[»] chr1 (2 HSPs)
chr1 (118-243)||(29360204-29360330)
chr1 (30-258)||(5716838-5717063)
[»] scaffold1041 (1 HSPs)
scaffold1041 (2-68)||(1103-1169)
[»] scaffold0009 (1 HSPs)
scaffold0009 (118-247)||(3228-3358)
[»] chr3 (2 HSPs)
chr3 (118-213)||(25080007-25080103)
chr3 (154-194)||(27049173-27049213)
[»] chr4 (1 HSPs)
chr4 (120-247)||(18982262-18982388)
[»] chr2 (1 HSPs)
chr2 (141-215)||(40709193-40709267)
[»] scaffold0360 (1 HSPs)
scaffold0360 (227-291)||(15155-15218)


Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 2 - 307
Target Start/End: Complemental strand, 25617523 - 25617227
Alignment:
Q  2 aaaagtgagagggaaacaagatattaccgttggaaatattaataggaaatagatttcggatagataggaaagatagaatattagagttgttgtgccgtga 101  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25617523 aaaagtgagagggaaacaagatattagcgttggaaatattaataggaaatagatttcggatagataggaaagatagaatattagagttgttgtgccgtga 25617424  T
Q  102 caaaaagcaactcacatgaaagcaaatttccggtggacctccggtgcaatccaatatctgattttgctctctaaagtttacacaactacgtgtctgaact 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |    
T  25617423 caaaaagcaactcacatgaaagcaaatttccggtggacctccggtgcaatccaatatctgattttgctctctaaagtttacacaactacg---------t 25617333  T
Q  202 cgtgcactcgaggctaacacgttggagcttcacaaacaatgcccaacataattgagaataaaatataaaataatgaacttgatttttgacaacttatctg 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25617332 cgtgcactcgaggctaacacgttggagcttcacaaacaatgcccaacataattgagaataaaatataaaataatgaacttgatttttgacaacttatctg 25617233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 2 - 307
Target Start/End: Complemental strand, 25678265 - 25677973
Alignment:
Q  2 aaaagtgagagggaaacaagatattaccgttggaaatattaataggaaatagatttcggatagataggaaagatagaatattagagttgttgtgccgtga 101  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||  |||| |||          ||||||| ||||     
T  25678265 aaaagcgagagggaaacaagatattactgttggaaatattaataggaaatagatttcggaaagatag--aagagaga----------tgttgtgtcgtgg 25678178  T
Q  102 caaaaagcaactcacatgaaagcaaatttccggtggacctccggtgcaatccaatatctgattttgctctctaaagtttacacaactacgtgtctgaact 201  Q
     ||||||| ||| | |||||||||||||| |||||||||||||||||||||||||||| | ||||||| || || |||||||||||||||| ||||||||    
T  25678177 -aaaaagccactgaaatgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctttccaaggtttacacaactacgtatctgaact 25678079  T
Q  202 cgtgcactcgaggctaacacgttggagcttcacaaacaatgcccaacataattgagaataaaatataaaataatgaacttgatttttgacaacttatctg 301  Q
    |||||||||||||| | || |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25678078 cgtgcactcgaggccagcatgttggagcttcacaaacaatgcccaaaataattgagaatagaatataaaataatgaacttgatttttgacaacttatctg 25677979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 2 - 307
Target Start/End: Complemental strand, 25391641 - 25391349
Alignment:
Q  2 aaaagtgagagggaaacaagatattaccgttggaaatattaataggaaatagatttcggatagataggaaagatagaatattagagttgttgtgccgtga 101  Q
    ||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||  |||| |||          ||||||||||||     
T  25391641 aaaagcgagagggaaacaatatattactgttggaaatattaataggaaatagatttcggaaagatag--aagagaga----------tgttgtgccgtgg 25391554  T
Q  102 caaaaagcaactcacatgaaagcaaatttccggtggacctccggtgcaatccaatatctgattttgctctctaaagtttacacaactacgtgtctgaact 201  Q
     ||||||  ||| | |||||||||||||| |||||||||||||||||||||||||||| | |||||||| | || ||||||||||||| || ||||||||    
T  25391553 -aaaaagtcactaaaatgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactatgtatctgaact 25391455  T
Q  202 cgtgcactcgaggctaacacgttggagcttcacaaacaatgcccaacataattgagaataaaatataaaataatgaacttgatttttgacaacttatctg 301  Q
    |||||||||||||| | ||| ||||||||||| ||||||||||||| ||||| ||||||| ||||||||| |||||||||||||||||||||||||||||    
T  25391454 cgtgcactcgaggccagcactttggagcttcataaacaatgcccaaaataatcgagaatagaatataaaacaatgaacttgatttttgacaacttatctg 25391355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 2 - 307
Target Start/End: Complemental strand, 25358610 - 25358318
Alignment:
Q  2 aaaagtgagagggaaacaagatattaccgttggaaatattaataggaaatagatttcggatagataggaaagatagaatattagagttgttgtgccgtga 101  Q
    ||||| |||||| |||||| ||||||| |||||||||||||||||||||||||||| ||| ||||||  |||| |||          ||||||||||||     
T  25358610 aaaagcgagaggtaaacaatatattactgttggaaatattaataggaaatagattttggaaagatag--aagagaga----------tgttgtgccgtgg 25358523  T
Q  102 caaaaagcaactcacatgaaagcaaatttccggtggacctccggtgcaatccaatatctgattttgctctctaaagtttacacaactacgtgtctgaact 201  Q
     ||||||  ||| | |||||||||||||| |||||||||||||||||||||||||||| | |||||||| | || ||||||||||||| || ||||||||    
T  25358522 -aaaaagtcactgaaatgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctccccaaggtttacacaactatgtatctgaact 25358424  T
Q  202 cgtgcactcgaggctaacacgttggagcttcacaaacaatgcccaacataattgagaataaaatataaaataatgaacttgatttttgacaacttatctg 301  Q
    |||||||||||| | | ||| ||||||||||| ||||||||||||| ||||| ||||||| ||||||||| |||||||||||||||||||||||||||||    
T  25358423 cgtgcactcgagaccagcactttggagcttcataaacaatgcccaaaataatcgagaatagaatataaaacaatgaacttgatttttgacaacttatctg 25358324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 25494759 - 25494703
Alignment:
Q  2 aaaagtgagagggaaacaagatattaccgttggaaatattaataggaaatagatttc 58  Q
    ||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  25494759 aaaagcgagagggaaacaatatattactgttggaaatattaataggaaatagatttc 25494703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 256 - 306
Target Start/End: Complemental strand, 25494702 - 25494652
Alignment:
Q  256 agaataaaatataaaataatgaacttgatttttgacaacttatctgctccc 306  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  25494702 agaatagaatataaaatgatgaacttgatttttgacaacttatctgctccc 25494652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 118 - 242
Target Start/End: Original strand, 9229278 - 9229403
Alignment:
Q  118 tgaaagcaaatttccggtggacctccggtgcaatccaatatctgattttgctctctaaagtttacacaactacgtgtctgaactcgtgcactcga-ggct 216  Q
    |||||| |||||| || | |||||| | ||||| |||||||| | |||||||||| || |||||||||| | | ||||||||||||||||||  | |||     
T  9229278 tgaaagaaaattttcgatagacctcagatgcaacccaatatccggttttgctctccaaggtttacacaattgcatgtctgaactcgtgcacttaagggca 9229377  T
Q  217 aacacgttggagcttcacaaacaatg 242  Q
    |||||  |||||||||||||||||||    
T  9229378 aacacaatggagcttcacaaacaatg 9229403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 246
Target Start/End: Complemental strand, 44300558 - 44300477
Alignment:
Q  163 ttttgctctctaaagtttacacaactacgtgtctgaactcgtgcactcgaggctaacacgttggagcttcacaaacaatgccca 246  Q
    |||||||| | || ||||||||||||| ||  ||||||||||  |||||| || ||||||||||||| |||||||| |||||||    
T  44300558 ttttgctccccaaggtttacacaactaggt--ctgaactcgtatactcgaagccaacacgttggagcctcacaaacgatgccca 44300477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 8178 - 8481
Alignment:
Q  1 gaaaagtgagagggaaacaagatattaccgttggaaatattaataggaaatagatttcggatagataggaaagatagaatattagagttgttgtgccgtg 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||||||||| ||||||||||| |   ||||||||| ||||||    
T  8178 gaaaagtgagagggaaacaagatattactgttggaaatattaataggaaatag--ttcggatagatacgaaagatagaaga---gagttgttgcgccgtg 8272  T
Q  101 acaaaaagcaactcacatgaaagcaaatttccggtggacctccggtgcaatccaatatctgattttgctctctaaagtttacacaactacgtgtctgaac 200  Q
     ||||| ||||||  |||||||||||||||||  |||||||| ||||||||  |||||| | |||||||| | || ||||||||||||||||||||||||    
T  8273 gcaaaa-gcaactgccatgaaagcaaatttccaatggacctctggtgcaatttaatatccggttttgctccccaatgtttacacaactacgtgtctgaac 8371  T
Q  201 tcgtgcactcgaggctaacacgttggagcttcacaaacaatgcccaacataattgagaataaaatataaaataatgaacttgatttttgacaac---tta 297  Q
    ||||||||| ||||||| ||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||   |||    
T  8372 tcgtgcacttgaggctagcacgttggagcttcacaaacaatacccaaaataattgagaatagaatataaaataatgaacttgatttttgacaactaatta 8471  T
Q  298 tctgctcccc 307  Q
    ||||||||||    
T  8472 tctgctcccc 8481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 49 - 243
Target Start/End: Original strand, 1094381 - 1094573
Alignment:
Q  49 aatagatttcggatagataggaaagatagaatattagagttgttgtgccgtgacaaaaagcaactcacatgaaagcaaatttccggtggacctccgg-tg 147  Q
    ||||||||| | ||||||||||||||||||| |   ||||||||||||||||||||||  || ||  | ||||||||||||| ||||||| |||||| ||    
T  1094381 aatagattttgaatagataggaaagatagaaga---gagttgttgtgccgtgacaaaagtca-ctgtcctgaaagcaaattttcggtggatctccgggtg 1094476  T
Q  148 caatccaatatctgattttgctctctaaagtttacacaactacgtgtctgaactcgtgcactcgaggc--taacacgttggagcttcacaaacaatgc 243  Q
    ||| |||| ||| | |||||||| |||| |||||||||||| ||||| ||||||||||||||||||||   |||||| ||||||||||||||||||||    
T  1094477 caacccaa-atccggttttgctccctaaggtttacacaactgcgtgtgtgaactcgtgcactcgaggcctgaacacgatggagcttcacaaacaatgc 1094573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 118 - 258
Target Start/End: Complemental strand, 34249448 - 34249307
Alignment:
Q  118 tgaaagcaaatttccggtggacctccggtgcaatccaatatctgattttgctctctaaagtttacacaactacgtgtctgaactcgtgcactcgagg-ct 216  Q
    |||||| |||||| |||||||||||| ||||||  || ||||   |||||||| | ||  |||||| |||| | ||||||||||||||||||||||  |     
T  34249448 tgaaagaaaattttcggtggacctccagtgcaactcattatccagttttgctccccaagatttacataactgcatgtctgaactcgtgcactcgagatca 34249349  T
Q  217 aacacgttggagcttcacaaacaatgcccaacataattgaga 258  Q
    |||||| |||||||||| ||||||||||||| ||||| ||||    
T  34249348 aacacgatggagcttcataaacaatgcccaaaataatagaga 34249307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 246
Target Start/End: Original strand, 1090747 - 1090817
Alignment:
Q  178 tttacacaactacgtgtctgaactcgtgcactcgaggc--taacacgttggagcttcacaaacaatgccca 246  Q
    ||||||||||||||||||||||||||  ||||||||||   ||||||  |||| |||||||||||||||||    
T  1090747 tttacacaactacgtgtctgaactcggacactcgaggcctgaacacgacggagtttcacaaacaatgccca 1090817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 215
Target Start/End: Original strand, 20728209 - 20728303
Alignment:
Q  120 aaagcaaatttccggtggacctccggtgcaatccaatatctgattttgctctctaaagtttacacaactacgtgtctgaactcgtgcactcgaggc 215  Q
    |||||||||||||||||||| ||||||| || | || ||    |||||||||| ||| ||||||||||||||||| |||| | |||||||||||||    
T  20728209 aaagcaaatttccggtggacttccggtgtaacctaaaattcagttttgctctccaaaatttacacaactacgtgtttgaa-ttgtgcactcgaggc 20728303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 118 - 247
Target Start/End: Original strand, 16098386 - 16098519
Alignment:
Q  118 tgaaagcaaatttccggtggacctccggtgcaatccaatatctgattttgctctctaaagtttacacaactacgtgtctgaactcgtgcactcgaggcta 217  Q
    |||||||||| |||||||||| |||| ||||||| ||||| | | |||||||||  ||||||||||||||||||||| ||||||||| |||||||||| |    
T  16098386 tgaaagcaaaattccggtggatctccagtgcaattcaataaccggttttgctcttcaaagtttacacaactacgtgtgtgaactcgttcactcgaggcca 16098485  T
Q  218 acacgttgg----agcttcacaaacaatgcccaa 247  Q
    |||||||||    |||||||||||||||||||||    
T  16098486 acacgttggagctagcttcacaaacaatgcccaa 16098519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 118 - 247
Target Start/End: Original strand, 32743607 - 32743737
Alignment:
Q  118 tgaaagcaaatttccggtggacctccggtgcaatccaatat-ctgattttgctctctaaagtttacacaactacgtgtctgaactcgtgcactcgagg-c 215  Q
    ||||||||||||||||||||||||||| ||||||| ||| | |||| ||||||| | || |||||||||||| | ||||||||||| |||||| |||| |    
T  32743607 tgaaagcaaatttccggtggacctccgatgcaatctaatttcctga-tttgctccccaaggtttacacaactgcttgtctgaactcatgcacttgaggcc 32743705  T
Q  216 taacacgttggagcttcacaaacaatgcccaa 247  Q
     |||||| |||||||||||||||||| |||||    
T  32743706 aaacacgatggagcttcacaaacaatacccaa 32743737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 30 - 247
Target Start/End: Complemental strand, 39777577 - 39777363
Alignment:
Q  30 gttggaaatattaataggaaatagatttcggatagataggaaagatagaatattagagttgttgtgccgtgacaaaaagcaactcacatgaaagcaaatt 129  Q
    |||||||||||||| || || ||||||| |||||| |||||||||||||| |   || |||||||||| ||||||||| ||   | | ||| ||| ||||    
T  39777577 gttggaaatattaagagaaattagattttggatagctaggaaagatagaaga---gaattgttgtgccatgacaaaaaccattgc-cttgagagcgaatt 39777482  T
Q  130 tccggtggacctccggtgcaatccaatatctgattttgctctctaaagtttacacaactacgtgtctgaactcgtgcactcgagg-ct-aacacgttgga 227  Q
    | ||||||||||||||| ||| |||  ||| | |||||||| | ||||||||||||||| ||||| |||||   ||||||||||| || |||||| ||||    
T  39777481 ttcggtggacctccggtacaacccag-atccggttttgctccccaaagtttacacaactgcgtgtttgaacctatgcactcgaggtctgaacacgatgga 39777383  T
Q  228 gcttcacaaacaatgcccaa 247  Q
    ||||||  ||||||||||||    
T  39777382 gcttcaataacaatgcccaa 39777363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 118 - 243
Target Start/End: Complemental strand, 29360330 - 29360204
Alignment:
Q  118 tgaaagcaaatttccggtggacctccggtgcaatccaatatctgattttgctctctaaagtttacacaactacgtgtctgaactcgtgcactcgagg-ct 216  Q
    ||||||||||||| ||||||||||||||||||| |||||||| ||||||||||   || |||||||||||| |||||||||| ||||||||| |||| |     
T  29360330 tgaaagcaaattttcggtggacctccggtgcaacccaatatccgattttgctcctcaaggtttacacaactgcgtgtctgaattcgtgcacttgaggcca 29360231  T
Q  217 aacacgttggagcttcacaaacaatgc 243  Q
    |||||| |||||||||| |||||||||    
T  29360230 aacacgatggagcttcataaacaatgc 29360204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 30 - 258
Target Start/End: Complemental strand, 5717063 - 5716838
Alignment:
Q  30 gttggaaatattaataggaaa-tagatttcggatagataggaaagatagaatattagagttgttgtgccgtgacaaaaagcaactcacatgaaagcaaat 128  Q
    |||||||||||||| || ||| |||| ||  || || |||||||||||||| |   ||||||||||||||||  ||||| || ||  | |||| ||||||    
T  5717063 gttggaaatattaagagtaaactagaatttagagagttaggaaagatagaaga---gagttgttgtgccgtggtaaaaacca-ctgccctgaatgcaaat 5716968  T
Q  129 ttccggtggacctccggtgcaatccaatatctgattttgctctctaaagtttacacaactacgtgtctgaactcgtgcactcg-aggctaacacgttgga 227  Q
    |||||||| || |||||||||| ||||  || |||||||||| | ||| ||||||||||| ||||||| ||||| | |||||| || | || ||| ||||    
T  5716967 ttccggtgtacttccggtgcaacccaag-tccgattttgctccccaaaatttacacaactgcgtgtctaaactcatccactcgaagtcaaaaacgatgga 5716869  T
Q  228 gcttcacaaacaatgcccaacataattgaga 258  Q
    |||||||||| ||||||||  ||||||||||    
T  5716868 gcttcacaaataatgcccataataattgaga 5716838  T

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Target: scaffold1041 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold1041
Description:

Target: scaffold1041; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 1103 - 1169
Alignment:
Q  2 aaaagtgagagggaaacaagatattaccgttggaaatattaataggaaatagatttcggatagatag 68  Q
    ||||| ||||||||||||||||||||| |||| |||||||| |||||||||||||||||| ||||||    
T  1103 aaaagcgagagggaaacaagatattactgttgaaaatattattaggaaatagatttcggaaagatag 1169  T

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Target: scaffold0009 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 118 - 247
Target Start/End: Original strand, 3228 - 3358
Alignment:
Q  118 tgaaagcaaatttccggtggacctccggtgcaatccaatatctgattttgctctctaaagtttacacaactacgtgtctgaactcgtgcactcgagg-ct 216  Q
    |||||||||||||  |||| | |||||||||||| ||||||| |||||| |||   || ||||| |||| | ||||||||||| ||||||||||||| |     
T  3228 tgaaagcaaatttttggtgaaactccggtgcaattcaatatccgattttactcctcaaggtttatacaatttcgtgtctgaacccgtgcactcgaggtca 3327  T
Q  217 aacacgttggagcttcacaaacaatgcccaa 247  Q
    |||||| |||||||||||||| |||| ||||    
T  3328 aacacgatggagcttcacaaataatgtccaa 3358  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 118 - 213
Target Start/End: Original strand, 25080007 - 25080103
Alignment:
Q  118 tgaaagcaaatttccggtggacctccggtgcaatccaata-tctgattttgctctctaaagtttacacaactacgtgtctgaactcgtgcactcgag 213  Q
    |||||||||||||||| |||||||||||||||| ||||||  | | |||| |||  ||| |||||||||| |  |||||||||||||||||||||||    
T  25080007 tgaaagcaaatttccgctggacctccggtgcaacccaatacccgggtttttctccgtaaggtttacacaattgtgtgtctgaactcgtgcactcgag 25080103  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 194
Target Start/End: Complemental strand, 27049213 - 27049173
Alignment:
Q  154 aatatctgattttgctctctaaagtttacacaactacgtgt 194  Q
    |||||||| |||||||||| |||||||||||||||||||||    
T  27049213 aatatctggttttgctctccaaagtttacacaactacgtgt 27049173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 247
Target Start/End: Original strand, 18982262 - 18982388
Alignment:
Q  120 aaagcaaatttccggtggacctccggtgcaatccaatatctgattttgctctctaaagtttacacaactacgtgtctgaactcgtgcactcgaggctaac 219  Q
    ||||||||||| || | |||||||| |  ||||| ||||  ||||||||||   |||| ||||  ||||| |||||||| | |||||||||||||  |||    
T  18982262 aaagcaaattttcgatagacctccgatataatcccatattcgattttgctcctcaaaggttacgtaactatgtgtctgacc-cgtgcactcgaggtcaac 18982360  T
Q  220 acgttggagcttcacaaacaatgcccaa 247  Q
    || ||||||||||||||||||| |||||    
T  18982361 acattggagcttcacaaacaatacccaa 18982388  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 40709267 - 40709193
Alignment:
Q  141 tccggtgcaatccaatatctgattttgctctctaaagtttacacaactacgtgtctgaactcgtgcactcgaggc 215  Q
    |||||||||| |||||||| | |||||||| | ||||||||||  ||| | ||||||||| | ||||||||||||    
T  40709267 tccggtgcaacccaatatccggttttgctccccaaagtttacattactgcatgtctgaacccatgcactcgaggc 40709193  T

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Target: scaffold0360 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 291
Target Start/End: Complemental strand, 15218 - 15155
Alignment:
Q  227 agcttcacaaacaatgcccaacataattgagaataaaatataaaataatgaacttgatttttgac 291  Q
    |||||||||||||||  |||| ||||||||||||||||||  |||  |||||||| |||||||||    
T  15218 agcttcacaaacaatatccaaaataattgagaataaaata-gaaagcatgaacttaatttttgac 15155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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